Rh5DG480100

Acyl-coenzyme A thioesterase 13-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000478
Physical Location & Seq
Reverse (-)
75769348 .. 75770380
1033 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG480100.1

Sequence Viewer

Length: 417 bp
ATGGCTCCGATTGGAGGAGAAGATGAGGACGTGAATATGAAAAAGAAGGCGAAAGAGTCTCCGGACCTGAGCCAGGACGAGTCAGAGGCCGTGTCGAGACTCGTCGTTCCGGCTCAGCGACCCGGCGAGTCGAGCATATACAATATGTTCTCTCTTAGAGGCATCCGAGTCGACCGAGCCCAACCCGGACTCGTCTTCTGTACTCTCAAGGTCCCTCCCCGCCTCACTGATAGAGCTGGAAATTTGGCCCAAGGTGCAATTGCAAACCTTGTTGATGTAGTTGGTGCTTCTGAAGCATATATTCACGGTCTCCCTATGAATGTTTCCGTAGACATATCTGTCTCCTTCATGTCAAAGGCAAAGCTTGATGTAAGCAACCCTTCTTCGCCATATACAGTGATCCATAGCAGCCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
4HBT

Protein Analysis

138

Amino Acids

14.78

Weight (kDa)

5.88

Isoelectric Point (pI)

43.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000478)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29590
fragaria_vesca FvH4_3g37930 FvH4_3g37930 FvH4_3g37970 FvH4_3g37990 FvH4_3g37990 FvH4_3g38000 FvH4_3g38010 FvH4_3g38050 FvH4_3g38060
malus_domestica MD03G1077300.v1.1 MD03G1077400.v1.1 MD03G1077500.v1.1 MD08G1031500.v1.1 MD11G1081500.v1.1 MD11G1081600.v1.1 MD11G1081700.v1.1 MD11G1081800.v1.1 MD11G1081900.v1.1
prunus_persica Prupe.6G061800_v2.0.a1 Prupe.6G061900_v2.0.a1 Prupe.6G062000_v2.0.a1 Prupe.6G062000_v2.0.a1 Prupe.6G062100_v2.0.a1 Prupe.6G062100_v2.0.a1 Prupe.6G062200_v2.0.a1 Prupe.6G062300_v2.0.a1
pyrus_communis pycom03g06110 pycom03g06120 pycom03g06130 pycom11g06960 pycom11g06970 pycom11g06980 pycom11g07020
rosa_chinensis RchiOBHm_Chr5g0068361 RchiOBHm_Chr5g0068381 RchiOBHm_Chr5g0068391 RchiOBHm_Chr5g0068401 RchiOBHm_Chr5g0068411 RchiOBHm_Chr5g0068441
rosa_laevigata RLG00000035969 RLG00000035971 RLG00000035972 RLG00000035973 RLG00000035974
rosa_multiflora Rmu_sc0001418.1_g000002 Rmu_sc0003450.1_g000002 Rmu_sc0003450.1_g000003 Rmu_sc0003450.1_g000004 Rmu_sc0003450.1_g000007 Rmu_sc0005087.1_g000001 Rmu_sc0006054.1_g000001
rosa_roxburghii Rroxscaffold_1G00012370 Rroxscaffold_1G00012380 Rroxscaffold_1G00012390 Rroxscaffold_1G00012400 Rroxscaffold_1G00012420 Rroxscaffold_1G00013110 Rroxscaffold_1G00013120 Rroxscaffold_1G00013130 Rroxscaffold_1G00013150 Rroxscaffold_1G00013160
rosa_rugosa Rorug05G0389200 Rorug05G0389400 Rorug05G0389500 Rorug05G0389600 Rorug05G0389600
rosa_samantha Rh5AG447900 Rh5AG448100 Rh5AG448200 Rh5AG448300 Rh5AG448400 Rh5BG465700 Rh5BG465900 Rh5BG466200 Rh5BG466300 Rh5BG466700 Rh5CG487500 Rh5CG487800 Rh5CG487900 Rh5CG488300 Rh5DG479500 Rh5DG479700 Rh5DG479800 Rh5DG480100
rosa_wichuraiana Rw5G041800 Rw5G041830 Rw5G041840 Rw5G041850 Rw5G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 338
AccI GTMKAC 2 cut(s) 171, 330
AccIII TCCGGA 1 cut(s) 61
AciI CCGC 1 cut(s) 220
AclWI GGATC 1 cut(s) 394
AcsI RAATTY 1 cut(s) 241
AcuI CTGAAG 1 cut(s) 312
AfaI GTAC 1 cut(s) 202
AfiI CCNNNNNNNGG 2 cut(s) 14, 73
AjiI CACGTC 1 cut(s) 31
AjnI CCWGG 1 cut(s) 72
AluBI AGCT 2 cut(s) 236, 364
AluI AGCT 2 cut(s) 236, 364
Alw26I GTCTC 4 cut(s) 63, 91, 314, 346
AlwI GGATC 1 cut(s) 394
Aor13HI TCCGGA 1 cut(s) 61
AoxI GGCC 2 cut(s) 87, 246
ApeKI GCWGC 1 cut(s) 408
ApoI RAATTY 1 cut(s) 241
AspS9I GGNCC 3 cut(s) 64, 211, 247
AsuC2I CCSGG 2 cut(s) 123, 186
AvaII GGWCC 2 cut(s) 64, 211
BanII GRGCYC 1 cut(s) 181
BbsI GAAGAC 1 cut(s) 187
BceAI ACGGC 1 cut(s) 74
BcgI CGANNNNNNTGC 2 cut(s) 151, 185
BciT130I CCWGG 1 cut(s) 74
BcnI CCSGG 2 cut(s) 123, 186
BcoDI GTCTC 4 cut(s) 63, 91, 314, 346
BisI GCNGC 1 cut(s) 409
BlpI GCTNAGC 1 cut(s) 114
BlsI GCNGC 1 cut(s) 410
Bme1390I CCNGG 3 cut(s) 74, 123, 186
Bme18I GGWCC 2 cut(s) 64, 211
BmgBI CACGTC 1 cut(s) 31
BmgT120I GGNCC 3 cut(s) 64, 211, 247
BmiI GGNNCC 2 cut(s) 6, 213
BmrFI CCNGG 3 cut(s) 74, 123, 186
BmsI GCATC 1 cut(s) 171
BpiI GAAGAC 1 cut(s) 187
Bpu10I CCTNAGC 1 cut(s) 68
Bpu1102I GCTNAGC 1 cut(s) 114
BpuEI CTTGAG 1 cut(s) 191
BpuMI CCSGG 2 cut(s) 123, 186
BsaI GGTCTC 1 cut(s) 314
BsaJI CCNNGG 1 cut(s) 250
BsaWI WCCGGW 1 cut(s) 61
Bsc4I CCNNNNNNNGG 2 cut(s) 14, 73
BseAI TCCGGA 1 cut(s) 61
BseBI CCWGG 1 cut(s) 74
BseDI CCNNGG 1 cut(s) 250
BseGI GGATG 1 cut(s) 162
BseLI CCNNNNNNNGG 2 cut(s) 14, 73
BseMII CTCAG 2 cut(s) 59, 128
BseRI GAGGAG 1 cut(s) 30
Bsh1285I CGRYCG 1 cut(s) 175
BshFI GGCC 2 cut(s) 89, 248
BsiEI CGRYCG 1 cut(s) 175
BsiSI CCGG 4 cut(s) 62, 110, 123, 186
BslFI GGGAC 1 cut(s) 197
BslI CCNNNNNNNGG 2 cut(s) 14, 73
BsmAI GTCTC 4 cut(s) 63, 91, 314, 346
BsmFI GGGAC 1 cut(s) 197
BsnI GGCC 2 cut(s) 89, 248
Bso31I GGTCTC 1 cut(s) 314
Bsp1286I GDGCHC 1 cut(s) 181
Bsp13I TCCGGA 1 cut(s) 61
Bsp143I GATC 1 cut(s) 399
Bsp1720I GCTNAGC 1 cut(s) 114
BspACI CCGC 1 cut(s) 220
BspANI GGCC 2 cut(s) 89, 248
BspCNI CTCAG 2 cut(s) 60, 127
BspEI TCCGGA 1 cut(s) 61
BspLI GGNNCC 2 cut(s) 6, 213
BspPI GGATC 1 cut(s) 394
BspTNI GGTCTC 1 cut(s) 314
BssECI CCNNGG 1 cut(s) 250
BssMI GATC 1 cut(s) 399
BssT1I CCWWGG 1 cut(s) 250
Bst2UI CCWGG 1 cut(s) 74
Bst4CI ACNGT 2 cut(s) 308, 397
BstDEI CTNAG 3 cut(s) 68, 114, 155
BstENI CCTNNNNNAGG 1 cut(s) 71
BstF5I GGATG 1 cut(s) 162
BstKTI GATC 1 cut(s) 402
BstMAI GTCTC 4 cut(s) 63, 91, 314, 346
BstMBI GATC 1 cut(s) 399
BstMCI CGRYCG 1 cut(s) 175
BstMWI GCNNNNNNNGC 3 cut(s) 132, 254, 293
BstNI CCWGG 1 cut(s) 74
BstSCI CCNGG 3 cut(s) 72, 121, 184
BstV2I GAAGAC 1 cut(s) 187
BsuRI GGCC 2 cut(s) 89, 248
BtrI CACGTC 1 cut(s) 31
BtsCI GGATG 1 cut(s) 162
BtsIMutI CAGTG 2 cut(s) 225, 402
Cfr13I GGNCC 3 cut(s) 64, 211, 247
Csp6I GTAC 1 cut(s) 201
CviAII CATG 1 cut(s) 349
CviJI RGCY 9 cut(s) 5, 72, 89, 113, 179, 236, 248, 364, 411
CviKI_1 RGCY 9 cut(s) 5, 72, 89, 113, 179, 236, 248, 364, 411
CviQI GTAC 1 cut(s) 201
DdeI CTNAG 3 cut(s) 68, 114, 155
DpnI GATC 1 cut(s) 401
DpnII GATC 1 cut(s) 399
DrdI GACNNNNNNGTC 1 cut(s) 338
DseDI GACNNNNNNGTC 1 cut(s) 338
Eco130I CCWWGG 1 cut(s) 250
Eco24I GRGCYC 1 cut(s) 181
Eco31I GGTCTC 1 cut(s) 314
Eco47I GGWCC 2 cut(s) 64, 211
Eco57I CTGAAG 1 cut(s) 312
EcoNI CCTNNNNNAGG 1 cut(s) 71
EcoO109I RGGNCCY 1 cut(s) 211
EcoRII CCWGG 1 cut(s) 72
EcoT14I CCWWGG 1 cut(s) 250
EcoT38I GRGCYC 1 cut(s) 181
ErhI CCWWGG 1 cut(s) 250
FaeI CATG 1 cut(s) 352
FalI AAGNNNNNCTT 2 cut(s) 364, 396
FaqI GGGAC 1 cut(s) 197
FatI CATG 1 cut(s) 348
FauI CCCGC 1 cut(s) 227
FblI GTMKAC 2 cut(s) 171, 330
Fnu4HI GCNGC 1 cut(s) 409
FokI GGATG 1 cut(s) 149
FriOI GRGCYC 1 cut(s) 181
Fsp4HI GCNGC 1 cut(s) 409
GluI GCNGC 1 cut(s) 409
HaeIII GGCC 2 cut(s) 89, 248
HapII CCGG 4 cut(s) 62, 110, 123, 186
Hin1II CATG 1 cut(s) 352
HincII GTYRAC 1 cut(s) 172
HindII GTYRAC 1 cut(s) 172
HindIII AAGCTT 1 cut(s) 362
HinfI GANTC 6 cut(s) 56, 80, 99, 128, 168, 189
HpaII CCGG 4 cut(s) 62, 110, 123, 186
Hpy166II GTNNAC 2 cut(s) 172, 331
Hpy188I TCNGA 4 cut(s) 9, 85, 167, 292
Hpy188III TCNNGA 2 cut(s) 62, 96
Hpy8I GTNNAC 2 cut(s) 172, 331
Hpy99I CGWCG 1 cut(s) 107
HpyAV CCTTC 3 cut(s) 40, 355, 390
HpyCH4III ACNGT 2 cut(s) 308, 397
HpyCH4IV ACGT 1 cut(s) 30
HpyCH4V TGCA 2 cut(s) 257, 263
HpyF10VI GCNNNNNNNGC 3 cut(s) 132, 254, 293
HpyF3I CTNAG 3 cut(s) 68, 114, 155
HpySE526I ACGT 1 cut(s) 30
Hsp92II CATG 1 cut(s) 352
Kpn2I TCCGGA 1 cut(s) 61
Kzo9I GATC 1 cut(s) 399
LmnI GCTCC 1 cut(s) 10
LpnPI CCDG 8 cut(s) 59, 75, 80, 86, 123, 136, 199, 222
LweI GCATC 1 cut(s) 171
MaeII ACGT 1 cut(s) 30
MalI GATC 1 cut(s) 401
MboI GATC 1 cut(s) 399
MboII GAAGA 3 cut(s) 32, 187, 375
MfeI CAATTG 1 cut(s) 258
MhlI GDGCHC 1 cut(s) 181
MluCI AATT 2 cut(s) 241, 258
MlyI GAGTC 6 cut(s) 65, 89, 93, 137, 177, 183
MnlI CCTC 6 cut(s) 8, 19, 79, 152, 225, 233
MroI TCCGGA 1 cut(s) 61
MspI CCGG 4 cut(s) 62, 110, 123, 186
MspR9I CCNGG 3 cut(s) 74, 123, 186
MunI CAATTG 1 cut(s) 258
MvaI CCWGG 1 cut(s) 74
MwoI GCNNNNNNNGC 3 cut(s) 132, 254, 293
NciI CCSGG 2 cut(s) 123, 186
NdeII GATC 1 cut(s) 399
NlaIII CATG 1 cut(s) 352
NlaIV GGNNCC 2 cut(s) 6, 213
PkrI GCNGC 1 cut(s) 410
PleI GAGTC 6 cut(s) 64, 88, 93, 136, 176, 183
PpsI GAGTC 6 cut(s) 64, 88, 93, 136, 176, 183
PpuMI RGGWCCY 1 cut(s) 211
Psp5II RGGWCCY 1 cut(s) 211
Psp6I CCWGG 1 cut(s) 72
PspGI CCWGG 1 cut(s) 72
PspN4I GGNNCC 2 cut(s) 6, 213
PspPI GGNCC 3 cut(s) 64, 211, 247
PspPPI RGGWCCY 1 cut(s) 211
RsaI GTAC 1 cut(s) 202
RsaNI GTAC 1 cut(s) 201
SalI GTCGAC 1 cut(s) 170
SatI GCNGC 1 cut(s) 409
Sau3AI GATC 1 cut(s) 399
Sau96I GGNCC 3 cut(s) 64, 211, 247
SchI GAGTC 6 cut(s) 65, 89, 93, 137, 177, 183
ScrFI CCNGG 3 cut(s) 74, 123, 186
SduI GDGCHC 1 cut(s) 181
SetI ASST 7 cut(s) 33, 69, 213, 238, 256, 270, 366
SfaNI GCATC 1 cut(s) 171
SinI GGWCC 2 cut(s) 64, 211
SmlI CTYRAG 1 cut(s) 206
SmoI CTYRAG 1 cut(s) 206
Sse9I AATT 2 cut(s) 241, 258
SsiI CCGC 1 cut(s) 220
StyD4I CCNGG 3 cut(s) 72, 121, 184
StyI CCWWGG 1 cut(s) 250
TaaI ACNGT 2 cut(s) 308, 397
TaiI ACGT 1 cut(s) 33
TaqI TCGA 3 cut(s) 95, 131, 171
TaqII GACCGA 1 cut(s) 189
TasI AATT 2 cut(s) 241, 258
TatI WGTACW 1 cut(s) 200
TscAI CASTG 2 cut(s) 232, 402
TseI GCWGC 1 cut(s) 408
TspDTI ATGAA 3 cut(s) 53, 332, 337
TspGWI ACGGA 1 cut(s) 316
TspRI CASTG 2 cut(s) 232, 402
VpaK11BI GGWCC 2 cut(s) 64, 211
XagI CCTNNNNNAGG 1 cut(s) 71
XapI RAATTY 1 cut(s) 241
XmiI GTMKAC 2 cut(s) 171, 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.