pycom11g06960

Acyl-coenzyme A thioesterase 13-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0000478
Physical Location & Seq
Forward (+)
5302399 .. 5304282
1884 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g06960.1

Sequence Viewer

Length: 624 bp
ATGGTCACAATCACGGAATCCCTAAAAAAATATCCAACGAGAATCCTTTTCCAAAATTTAACAGCGAAGCCCAGTCCAACCCAGGCCGTTATTTTGACCTCAACGTCTGCAGAGAAGGATCCGAATCAAGGCGCTGCAAACGCCAGCATGGAGAAGGCGAAGAAATCCTTGGACCTGACCCACGACGAGTCAGAGGCCGCGTCACGACTCACCGTTCCACCTCACCAAGCCGGCGCCGGGCCGAGCTTCTACGAGTATTACGCTCTTCGCGGCATCCGAGTCGACCGAGTCGAACCCGGACTCGTCGTCTGTTCTTTCAAGGTCCCTCCCCGCCTCACCGATAGAAGTGGAAGGTTGGCTAATGGTGCAATTGCAAACCTGGTCGATGAAGTGGGTGGCGCCGTTGTTCATGTTGAGGGTCTTCCTATGAATGTTTCAGTGGACATGTCCATCTCGTTTATGTCCAGTCCCAAGCTTGATGACGAGTTAGAGATCACGTCAAGGGTGTTAGGACAAAGAGGGGGTTATTCAGGAACAATAGTGCTTCTGAGAAACAAAGCAACTGGTGAGGTTATTGCTGAAGGTCGGCATTCGTTGTTTGGTAGACATGCTAGCAAACTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
4HBT

Protein Analysis

208

Amino Acids

22.22

Weight (kDa)

8.67

Isoelectric Point (pI)

34.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
4HBT PF03061 117 - 170 3e-07 Thioesterase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000478)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29590
fragaria_vesca FvH4_3g37930 FvH4_3g37930 FvH4_3g37970 FvH4_3g37990 FvH4_3g37990 FvH4_3g38000 FvH4_3g38010 FvH4_3g38050 FvH4_3g38060
malus_domestica MD03G1077300.v1.1 MD03G1077400.v1.1 MD03G1077500.v1.1 MD08G1031500.v1.1 MD11G1081500.v1.1 MD11G1081600.v1.1 MD11G1081700.v1.1 MD11G1081800.v1.1 MD11G1081900.v1.1
prunus_persica Prupe.6G061800_v2.0.a1 Prupe.6G061900_v2.0.a1 Prupe.6G062000_v2.0.a1 Prupe.6G062000_v2.0.a1 Prupe.6G062100_v2.0.a1 Prupe.6G062100_v2.0.a1 Prupe.6G062200_v2.0.a1 Prupe.6G062300_v2.0.a1
pyrus_communis pycom03g06110 pycom03g06120 pycom03g06130 pycom11g06960 pycom11g06970 pycom11g06980 pycom11g07020
rosa_chinensis RchiOBHm_Chr5g0068361 RchiOBHm_Chr5g0068381 RchiOBHm_Chr5g0068391 RchiOBHm_Chr5g0068401 RchiOBHm_Chr5g0068411 RchiOBHm_Chr5g0068441
rosa_laevigata RLG00000035969 RLG00000035971 RLG00000035972 RLG00000035973 RLG00000035974
rosa_multiflora Rmu_sc0001418.1_g000002 Rmu_sc0003450.1_g000002 Rmu_sc0003450.1_g000003 Rmu_sc0003450.1_g000004 Rmu_sc0003450.1_g000007 Rmu_sc0005087.1_g000001 Rmu_sc0006054.1_g000001
rosa_roxburghii Rroxscaffold_1G00012370 Rroxscaffold_1G00012380 Rroxscaffold_1G00012390 Rroxscaffold_1G00012400 Rroxscaffold_1G00012420 Rroxscaffold_1G00013110 Rroxscaffold_1G00013120 Rroxscaffold_1G00013130 Rroxscaffold_1G00013150 Rroxscaffold_1G00013160
rosa_rugosa Rorug05G0389200 Rorug05G0389400 Rorug05G0389500 Rorug05G0389600 Rorug05G0389600
rosa_samantha Rh5AG447900 Rh5AG448100 Rh5AG448200 Rh5AG448300 Rh5AG448400 Rh5BG465700 Rh5BG465900 Rh5BG466200 Rh5BG466300 Rh5BG466700 Rh5CG487500 Rh5CG487800 Rh5CG487900 Rh5CG488300 Rh5DG479500 Rh5DG479700 Rh5DG479800 Rh5DG480100
rosa_wichuraiana Rw5G041800 Rw5G041830 Rw5G041840 Rw5G041850 Rw5G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 103
AccB1I GGYRCC 2 cut(s) 233, 398
AccI GTMKAC 2 cut(s) 282, 604
AccII CGCG 2 cut(s) 200, 270
AciI CCGC 3 cut(s) 198, 270, 331
AclWI GGATC 2 cut(s) 113, 126
AcsI RAATTY 1 cut(s) 55
AcuI CTGAAG 1 cut(s) 600
AcyI GRCGYC 2 cut(s) 234, 399
AfiI CCNNNNNNNGG 2 cut(s) 128, 237
AflIII ACRYGT 1 cut(s) 444
AgsI TTSAA 1 cut(s) 319
AhdI GACNNNNNGTC 1 cut(s) 305
AjiI CACGTC 1 cut(s) 498
AjnI CCWGG 2 cut(s) 81, 378
AjuI GAANNNNNNNTTGG 2 cut(s) 152, 184
AluBI AGCT 2 cut(s) 246, 475
AluI AGCT 2 cut(s) 246, 475
AlwI GGATC 2 cut(s) 113, 126
AoxI GGCC 3 cut(s) 84, 195, 239
ApeKI GCWGC 1 cut(s) 134
ApoI RAATTY 1 cut(s) 55
AspLEI GCGC 3 cut(s) 134, 236, 401
AspS9I GGNCC 3 cut(s) 172, 239, 322
AsuC2I CCSGG 2 cut(s) 238, 297
AsuHPI GGTGA 4 cut(s) 202, 215, 328, 578
AsuNHI GCTAGC 1 cut(s) 611
AvaII GGWCC 2 cut(s) 172, 322
BamHI GGATCC 1 cut(s) 118
BanI GGYRCC 2 cut(s) 233, 398
BbsI GAAGAC 1 cut(s) 413
BbvI GCAGC 1 cut(s) 121
BccI CCATC 1 cut(s) 458
BceAI ACGGC 2 cut(s) 71, 386
BcgI CGANNNNNNTGC 2 cut(s) 262, 296
BciT130I CCWGG 2 cut(s) 83, 380
BcnI CCSGG 2 cut(s) 238, 297
BfaI CTAG 1 cut(s) 612
BfmI CTRYAG 1 cut(s) 108
BfoI RGCGCY 3 cut(s) 135, 237, 402
BisI GCNGC 3 cut(s) 135, 198, 271
BlsI GCNGC 3 cut(s) 136, 199, 272
Bme1390I CCNGG 4 cut(s) 83, 238, 297, 380
Bme18I GGWCC 2 cut(s) 172, 322
BmeRI GACNNNNNGTC 1 cut(s) 305
BmgBI CACGTC 1 cut(s) 498
BmgT120I GGNCC 3 cut(s) 172, 239, 322
BmiI GGNNCC 4 cut(s) 120, 235, 324, 400
BmrFI CCNGG 4 cut(s) 83, 238, 297, 380
BmrI ACTGGG 1 cut(s) 66
BmsI GCATC 1 cut(s) 282
BmtI GCTAGC 1 cut(s) 615
BmuI ACTGGG 1 cut(s) 66
BpiI GAAGAC 1 cut(s) 413
BpuMI CCSGG 2 cut(s) 238, 297
BsaBI GATNNNNATC 1 cut(s) 123
BsaHI GRCGYC 2 cut(s) 234, 399
BsaJI CCNNGG 2 cut(s) 81, 168
Bsc4I CCNNNNNNNGG 2 cut(s) 128, 237
Bse118I RCCGGY 1 cut(s) 230
Bse1I ACTGG 3 cut(s) 72, 465, 568
Bse8I GATNNNNATC 1 cut(s) 123
BseBI CCWGG 2 cut(s) 83, 380
BseDI CCNNGG 2 cut(s) 81, 168
BseGI GGATG 1 cut(s) 273
BseJI GATNNNNATC 1 cut(s) 123
BseLI CCNNNNNNNGG 2 cut(s) 128, 237
BseMII CTCAG 1 cut(s) 539
BseNI ACTGG 3 cut(s) 72, 465, 568
BseXI GCAGC 1 cut(s) 121
Bsh1236I CGCG 2 cut(s) 200, 270
Bsh1285I CGRYCG 1 cut(s) 286
BshFI GGCC 3 cut(s) 86, 197, 241
BshNI GGYRCC 2 cut(s) 233, 398
BsiEI CGRYCG 1 cut(s) 286
BsiSI CCGG 3 cut(s) 231, 237, 297
BslFI GGGAC 2 cut(s) 308, 453
BslI CCNNNNNNNGG 2 cut(s) 128, 237
BsmFI GGGAC 2 cut(s) 308, 453
BsmI GAATGC 1 cut(s) 589
BsnI GGCC 3 cut(s) 86, 197, 241
Bsp143I GATC 2 cut(s) 118, 492
BspACI CCGC 3 cut(s) 198, 270, 331
BspANI GGCC 3 cut(s) 86, 197, 241
BspCNI CTCAG 1 cut(s) 540
BspFNI CGCG 2 cut(s) 200, 270
BspLI GGNNCC 4 cut(s) 120, 235, 324, 400
BspMAI CTGCAG 1 cut(s) 112
BspOI GCTAGC 1 cut(s) 615
BspPI GGATC 2 cut(s) 113, 126
BspQI GCTCTTC 1 cut(s) 270
BspT107I GGYRCC 2 cut(s) 233, 398
BsrFI RCCGGY 1 cut(s) 230
BsrI ACTGG 3 cut(s) 72, 465, 568
BssAI RCCGGY 1 cut(s) 230
BssECI CCNNGG 2 cut(s) 81, 168
BssMI GATC 2 cut(s) 118, 492
BssNI GRCGYC 2 cut(s) 234, 399
BssT1I CCWWGG 1 cut(s) 168
Bst2UI CCWGG 2 cut(s) 83, 380
Bst4CI ACNGT 1 cut(s) 214
Bst6I CTCTTC 1 cut(s) 270
BstACI GRCGYC 2 cut(s) 234, 399
BstC8I GCNNGC 3 cut(s) 145, 232, 613
BstDEI CTNAG 1 cut(s) 548
BstF5I GGATG 1 cut(s) 273
BstFNI CGCG 2 cut(s) 200, 270
BstH2I RGCGCY 3 cut(s) 135, 237, 402
BstHHI GCGC 3 cut(s) 134, 236, 401
BstKTI GATC 2 cut(s) 121, 495
BstMBI GATC 2 cut(s) 118, 492
BstMCI CGRYCG 1 cut(s) 286
BstMWI GCNNNNNNNGC 2 cut(s) 140, 365
BstNI CCWGG 2 cut(s) 83, 380
BstNSI RCATGY 2 cut(s) 448, 611
BstSCI CCNGG 4 cut(s) 81, 236, 295, 378
BstSFI CTRYAG 1 cut(s) 108
BstUI CGCG 2 cut(s) 200, 270
BstV1I GCAGC 1 cut(s) 121
BstV2I GAAGAC 1 cut(s) 413
BstX2I RGATCY 1 cut(s) 118
BstYI RGATCY 1 cut(s) 118
BsuRI GGCC 3 cut(s) 86, 197, 241
BtrI CACGTC 1 cut(s) 498
BtsCI GGATG 1 cut(s) 273
BtsIMutI CAGTG 1 cut(s) 444
Cac8I GCNNGC 3 cut(s) 145, 232, 613
CfoI GCGC 3 cut(s) 134, 236, 401
Cfr10I RCCGGY 1 cut(s) 230
Cfr13I GGNCC 3 cut(s) 172, 239, 322
CseI GACGC 1 cut(s) 189
CsiI ACCWGGT 1 cut(s) 378
CviAII CATG 4 cut(s) 148, 410, 445, 608
CviJI RGCY 8 cut(s) 70, 86, 197, 230, 241, 246, 359, 475
CviKI_1 RGCY 8 cut(s) 70, 86, 197, 230, 241, 246, 359, 475
DdeI CTNAG 1 cut(s) 548
DinI GGCGCC 2 cut(s) 235, 400
DpnI GATC 2 cut(s) 120, 494
DpnII GATC 2 cut(s) 118, 492
DrdI GACNNNNNNGTC 1 cut(s) 103
DriI GACNNNNNGTC 1 cut(s) 305
DseDI GACNNNNNNGTC 1 cut(s) 103
Eam1104I CTCTTC 1 cut(s) 270
Eam1105I GACNNNNNGTC 1 cut(s) 305
EarI CTCTTC 1 cut(s) 270
Eco130I CCWWGG 1 cut(s) 168
Eco47I GGWCC 2 cut(s) 172, 322
Eco57I CTGAAG 1 cut(s) 600
EcoO109I RGGNCCY 1 cut(s) 322
EcoRII CCWGG 2 cut(s) 81, 378
EcoT14I CCWWGG 1 cut(s) 168
EgeI GGCGCC 2 cut(s) 235, 400
EheI GGCGCC 2 cut(s) 235, 400
ErhI CCWWGG 1 cut(s) 168
FaeI CATG 4 cut(s) 151, 413, 448, 611
FaiI YATR 6 cut(s) 149, 411, 428, 446, 461, 609
FalI AAGNNNNNCTT 2 cut(s) 152, 184
FaqI GGGAC 2 cut(s) 308, 453
FatI CATG 4 cut(s) 147, 409, 444, 607
FauI CCCGC 1 cut(s) 338
FblI GTMKAC 2 cut(s) 282, 604
Fnu4HI GCNGC 3 cut(s) 135, 198, 271
FokI GGATG 1 cut(s) 260
Fsp4HI GCNGC 3 cut(s) 135, 198, 271
FspBI CTAG 1 cut(s) 612
GlaI GCGC 3 cut(s) 133, 235, 400
GluI GCNGC 3 cut(s) 135, 198, 271
HaeII RGCGCY 3 cut(s) 135, 237, 402
HaeIII GGCC 3 cut(s) 86, 197, 241
HapII CCGG 3 cut(s) 231, 237, 297
HgaI GACGC 1 cut(s) 189
HhaI GCGC 3 cut(s) 134, 236, 401
Hin1I GRCGYC 2 cut(s) 234, 399
Hin1II CATG 4 cut(s) 151, 413, 448, 611
Hin6I GCGC 3 cut(s) 132, 234, 399
HinP1I GCGC 3 cut(s) 132, 234, 399
HincII GTYRAC 1 cut(s) 283
HindII GTYRAC 1 cut(s) 283
HindIII AAGCTT 1 cut(s) 473
HinfI GANTC 8 cut(s) 17, 42, 124, 188, 207, 279, 288, 300
HpaII CCGG 3 cut(s) 231, 237, 297
HphI GGTGA 4 cut(s) 202, 215, 328, 578
Hpy166II GTNNAC 3 cut(s) 283, 442, 605
Hpy188I TCNGA 5 cut(s) 123, 193, 278, 549, 623
Hpy188III TCNNGA 2 cut(s) 204, 531
Hpy8I GTNNAC 3 cut(s) 283, 442, 605
Hpy99I CGWCG 2 cut(s) 188, 308
HpyAV CCTTC 4 cut(s) 109, 148, 345, 575
HpyCH4III ACNGT 1 cut(s) 214
HpyCH4IV ACGT 2 cut(s) 104, 497
HpyCH4V TGCA 4 cut(s) 110, 137, 368, 374
HpyF10VI GCNNNNNNNGC 2 cut(s) 140, 365
HpyF3I CTNAG 1 cut(s) 548
HpySE526I ACGT 2 cut(s) 104, 497
Hsp92I GRCGYC 2 cut(s) 234, 399
Hsp92II CATG 4 cut(s) 151, 413, 448, 611
HspAI GCGC 3 cut(s) 132, 234, 399
KasI GGCGCC 2 cut(s) 233, 398
KroI GCCGGC 1 cut(s) 230
KroNI GCCGGC 1 cut(s) 232
Kzo9I GATC 2 cut(s) 118, 492
LguI GCTCTTC 1 cut(s) 270
Lsp1109I GCAGC 1 cut(s) 121
LweI GCATC 1 cut(s) 282
MabI ACCWGGT 1 cut(s) 378
MaeI CTAG 1 cut(s) 612
MaeII ACGT 2 cut(s) 104, 497
MaeIII GTNAC 2 cut(s) 4, 201
MalI GATC 2 cut(s) 120, 494
MboI GATC 2 cut(s) 118, 492
MboII GAAGA 3 cut(s) 172, 257, 413
MfeI CAATTG 1 cut(s) 369
MflI RGATCY 1 cut(s) 118
MluCI AATT 2 cut(s) 55, 369
Mly113I GGCGCC 2 cut(s) 234, 399
MlyI GAGTC 5 cut(s) 197, 201, 288, 294, 297
MmeI TCCRAC 2 cut(s) 59, 101
MnlI CCTC 8 cut(s) 109, 187, 231, 336, 344, 409, 512, 562
MroNI GCCGGC 1 cut(s) 230
MseI TTAA 1 cut(s) 59
MspI CCGG 3 cut(s) 231, 237, 297
MspR9I CCNGG 4 cut(s) 83, 238, 297, 380
MunI CAATTG 1 cut(s) 369
Mva1269I GAATGC 1 cut(s) 589
MvaI CCWGG 2 cut(s) 83, 380
MvnI CGCG 2 cut(s) 200, 270
MwoI GCNNNNNNNGC 2 cut(s) 140, 365
NaeI GCCGGC 1 cut(s) 232
NarI GGCGCC 2 cut(s) 234, 399
NciI CCSGG 2 cut(s) 238, 297
NdeII GATC 2 cut(s) 118, 492
NgoMIV GCCGGC 1 cut(s) 230
NheI GCTAGC 1 cut(s) 611
NlaIII CATG 4 cut(s) 151, 413, 448, 611
NlaIV GGNNCC 4 cut(s) 120, 235, 324, 400
NmeAIII GCCGAG 1 cut(s) 267
NmuCI GTSAC 2 cut(s) 4, 201
NspI RCATGY 2 cut(s) 448, 611
PciI ACATGT 1 cut(s) 444
PciSI GCTCTTC 1 cut(s) 270
PcsI WCGNNNNNNNCGW 2 cut(s) 274, 288
PctI GAATGC 1 cut(s) 589
PdiI GCCGGC 1 cut(s) 232
PfeI GAWTC 3 cut(s) 17, 42, 124
PflFI GACNNNGTC 1 cut(s) 287
PkrI GCNGC 3 cut(s) 136, 199, 272
PleI GAGTC 5 cut(s) 196, 201, 287, 294, 296
PluTI GGCGCC 2 cut(s) 237, 402
PpsI GAGTC 5 cut(s) 196, 201, 287, 294, 296
PpuMI RGGWCCY 1 cut(s) 322
PscI ACATGT 1 cut(s) 444
Psp5II RGGWCCY 1 cut(s) 322
Psp6I CCWGG 2 cut(s) 81, 378
PspGI CCWGG 2 cut(s) 81, 378
PspN4I GGNNCC 4 cut(s) 120, 235, 324, 400
PspPI GGNCC 3 cut(s) 172, 239, 322
PspPPI RGGWCCY 1 cut(s) 322
PstI CTGCAG 1 cut(s) 112
PsuI RGATCY 1 cut(s) 118
PsyI GACNNNGTC 1 cut(s) 287
SalI GTCGAC 1 cut(s) 281
SapI GCTCTTC 1 cut(s) 270
SaqAI TTAA 1 cut(s) 59
SatI GCNGC 3 cut(s) 135, 198, 271
Sau3AI GATC 2 cut(s) 118, 492
Sau96I GGNCC 3 cut(s) 172, 239, 322
SchI GAGTC 5 cut(s) 197, 201, 288, 294, 297
ScrFI CCNGG 4 cut(s) 83, 238, 297, 380
SexAI ACCWGGT 1 cut(s) 378
SfaNI GCATC 1 cut(s) 282
SfcI CTRYAG 1 cut(s) 108
SfoI GGCGCC 2 cut(s) 235, 400
SinI GGWCC 2 cut(s) 172, 322
Sse9I AATT 2 cut(s) 55, 369
SsiI CCGC 3 cut(s) 198, 270, 331
SspDI GGCGCC 2 cut(s) 233, 398
SspMI CTAG 1 cut(s) 612
StyD4I CCNGG 4 cut(s) 81, 236, 295, 378
StyI CCWWGG 1 cut(s) 168
TaaI ACNGT 1 cut(s) 214
TaiI ACGT 2 cut(s) 107, 500
TaqI TCGA 3 cut(s) 282, 291, 384
TaqII GACCGA 1 cut(s) 300
TasI AATT 2 cut(s) 55, 369
TauI GCSGC 2 cut(s) 200, 273
TfiI GAWTC 3 cut(s) 17, 42, 124
Tru1I TTAA 1 cut(s) 59
Tru9I TTAA 1 cut(s) 59
TscAI CASTG 1 cut(s) 444
TseFI GTSAC 2 cut(s) 4, 201
TseI GCWGC 1 cut(s) 134
Tsp45I GTSAC 2 cut(s) 4, 201
TspDTI ATGAA 3 cut(s) 398, 402, 443
TspGWI ACGGA 1 cut(s) 29
TspRI CASTG 1 cut(s) 444
Tth111I GACNNNGTC 1 cut(s) 287
VpaK11BI GGWCC 2 cut(s) 172, 322
XapI RAATTY 1 cut(s) 55
XceI RCATGY 2 cut(s) 448, 611
XmiI GTMKAC 2 cut(s) 282, 604
XspI CTAG 1 cut(s) 612
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.