Prupe.6G061800_v2.0.a1

Acyl-coenzyme A thioesterase 13-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000478
Physical Location & Seq
Forward (+)
4275373 .. 4277277
1905 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G061800.1

Sequence Viewer

Length: 507 bp
ATGGATCAGAATGAAGGAGGAAAACCCAGTATGGAGAAGGCCAAGAGGTCTCTGGAGCTGACCGACGACGAGTCAGAGGCCGTGTCCAGGCTCGCCGTTCCGCCTCACCGAGCCGGCGCCGGTCCGAGCTTCTACGAGTATTTCGCTCTCAGAGGCATCCAAGTCGACCGAGTGGAACCGCGACTCGTCGTCTGTACTTTCAAAGTCCCTCCCCACCTCAGCGATAGAAGTGGAAGGTTGGCTAATGGTGCAATTGCAAACCTTGTTGATGAAGTGGGTGGTGCCGTTGTTCATGTTGAGGGCCTCCCTATGAACGTTTCAGTGGATATGTGCATCTCTTATATGTCAACTGCGAAGCTTCATGATGAATTAGAGATCACCTCAAGGGTGTTAGGACAAAGAGGGGGTTATTCAGGAACGATAGTGCTTATGAGAAACAAGGTAACTGGGGAGGTTATTGCTGAAGGTCGACATTCATTGTTTGGTAGACATGCTAGCAAACTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
4HBT

Protein Analysis

169

Amino Acids

18.21

Weight (kDa)

6.59

Isoelectric Point (pI)

32.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000478)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29590
fragaria_vesca FvH4_3g37930 FvH4_3g37930 FvH4_3g37970 FvH4_3g37990 FvH4_3g37990 FvH4_3g38000 FvH4_3g38010 FvH4_3g38050 FvH4_3g38060
malus_domestica MD03G1077300.v1.1 MD03G1077400.v1.1 MD03G1077500.v1.1 MD08G1031500.v1.1 MD11G1081500.v1.1 MD11G1081600.v1.1 MD11G1081700.v1.1 MD11G1081800.v1.1 MD11G1081900.v1.1
prunus_persica Prupe.6G061800_v2.0.a1 Prupe.6G061900_v2.0.a1 Prupe.6G062000_v2.0.a1 Prupe.6G062000_v2.0.a1 Prupe.6G062100_v2.0.a1 Prupe.6G062100_v2.0.a1 Prupe.6G062200_v2.0.a1 Prupe.6G062300_v2.0.a1
pyrus_communis pycom03g06110 pycom03g06120 pycom03g06130 pycom11g06960 pycom11g06970 pycom11g06980 pycom11g07020
rosa_chinensis RchiOBHm_Chr5g0068361 RchiOBHm_Chr5g0068381 RchiOBHm_Chr5g0068391 RchiOBHm_Chr5g0068401 RchiOBHm_Chr5g0068411 RchiOBHm_Chr5g0068441
rosa_laevigata RLG00000035969 RLG00000035971 RLG00000035972 RLG00000035973 RLG00000035974
rosa_multiflora Rmu_sc0001418.1_g000002 Rmu_sc0003450.1_g000002 Rmu_sc0003450.1_g000003 Rmu_sc0003450.1_g000004 Rmu_sc0003450.1_g000007 Rmu_sc0005087.1_g000001 Rmu_sc0006054.1_g000001
rosa_roxburghii Rroxscaffold_1G00012370 Rroxscaffold_1G00012380 Rroxscaffold_1G00012390 Rroxscaffold_1G00012400 Rroxscaffold_1G00012420 Rroxscaffold_1G00013110 Rroxscaffold_1G00013120 Rroxscaffold_1G00013130 Rroxscaffold_1G00013150 Rroxscaffold_1G00013160
rosa_rugosa Rorug05G0389200 Rorug05G0389400 Rorug05G0389500 Rorug05G0389600 Rorug05G0389600
rosa_samantha Rh5AG447900 Rh5AG448100 Rh5AG448200 Rh5AG448300 Rh5AG448400 Rh5BG465700 Rh5BG465900 Rh5BG466200 Rh5BG466300 Rh5BG466700 Rh5CG487500 Rh5CG487800 Rh5CG487900 Rh5CG488300 Rh5DG479500 Rh5DG479700 Rh5DG479800 Rh5DG480100
rosa_wichuraiana Rw5G041800 Rw5G041830 Rw5G041840 Rw5G041850 Rw5G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 116, 281
AccI GTMKAC 3 cut(s) 165, 469, 487
AccII CGCG 1 cut(s) 181
AciI CCGC 2 cut(s) 101, 179
AclI AACGTT 1 cut(s) 315
AclWI GGATC 1 cut(s) 12
AcuI CTGAAG 1 cut(s) 483
AcyI GRCGYC 1 cut(s) 117
AfaI GTAC 1 cut(s) 196
AfiI CCNNNNNNNGG 1 cut(s) 87
AgsI TTSAA 1 cut(s) 202
AhdI GACNNNNNGTC 2 cut(s) 70, 188
AjnI CCWGG 1 cut(s) 86
AluBI AGCT 3 cut(s) 58, 129, 358
AluI AGCT 3 cut(s) 58, 129, 358
Alw26I GTCTC 1 cut(s) 54
AlwI GGATC 1 cut(s) 12
AoxI GGCC 3 cut(s) 39, 78, 301
AspLEI GCGC 1 cut(s) 119
AspS9I GGNCC 2 cut(s) 122, 301
AsuHPI GGTGA 2 cut(s) 98, 370
AsuNHI GCTAGC 1 cut(s) 494
AvaII GGWCC 1 cut(s) 122
BanI GGYRCC 2 cut(s) 116, 281
BbvCI CCTCAGC 1 cut(s) 218
BceAI ACGGC 3 cut(s) 65, 80, 269
BcgI CGANNNNNNTGC 2 cut(s) 145, 179
BciT130I CCWGG 1 cut(s) 88
BcoDI GTCTC 1 cut(s) 54
BfaI CTAG 1 cut(s) 495
BfoI RGCGCY 1 cut(s) 120
Bme1390I CCNGG 1 cut(s) 88
Bme18I GGWCC 1 cut(s) 122
BmeRI GACNNNNNGTC 2 cut(s) 70, 188
BmgT120I GGNCC 2 cut(s) 122, 301
BmiI GGNNCC 3 cut(s) 118, 177, 283
BmrFI CCNGG 1 cut(s) 88
BmrI ACTGGG 2 cut(s) 21, 456
BmsI GCATC 2 cut(s) 165, 342
BmtI GCTAGC 1 cut(s) 498
BmuI ACTGGG 2 cut(s) 21, 456
BplI GAGNNNNNCTC 2 cut(s) 365, 397
BpmI CTGGAG 1 cut(s) 74
Bpu10I CCTNAGC 1 cut(s) 218
BpuEI CTTGAG 1 cut(s) 367
BsaHI GRCGYC 1 cut(s) 117
BsaI GGTCTC 1 cut(s) 54
Bsc4I CCNNNNNNNGG 1 cut(s) 87
Bse118I RCCGGY 2 cut(s) 113, 119
Bse1I ACTGG 2 cut(s) 27, 451
BseBI CCWGG 1 cut(s) 88
BseGI GGATG 1 cut(s) 156
BseLI CCNNNNNNNGG 1 cut(s) 87
BseMII CTCAG 2 cut(s) 163, 232
BseNI ACTGG 2 cut(s) 27, 451
Bsh1236I CGCG 1 cut(s) 181
Bsh1285I CGRYCG 1 cut(s) 169
BshFI GGCC 3 cut(s) 41, 80, 303
BshNI GGYRCC 2 cut(s) 116, 281
BsiEI CGRYCG 1 cut(s) 169
BsiSI CCGG 2 cut(s) 114, 120
BslFI GGGAC 1 cut(s) 191
BslI CCNNNNNNNGG 1 cut(s) 87
BsmAI GTCTC 1 cut(s) 54
BsmFI GGGAC 1 cut(s) 191
BsnI GGCC 3 cut(s) 41, 80, 303
Bso31I GGTCTC 1 cut(s) 54
Bsp143I GATC 2 cut(s) 4, 375
BspACI CCGC 2 cut(s) 101, 179
BspANI GGCC 3 cut(s) 41, 80, 303
BspCNI CTCAG 2 cut(s) 162, 231
BspFNI CGCG 1 cut(s) 181
BspHI TCATGA 1 cut(s) 361
BspLI GGNNCC 3 cut(s) 118, 177, 283
BspOI GCTAGC 1 cut(s) 498
BspPI GGATC 1 cut(s) 12
BspT107I GGYRCC 2 cut(s) 116, 281
BspTNI GGTCTC 1 cut(s) 54
BsrFI RCCGGY 2 cut(s) 113, 119
BsrI ACTGG 2 cut(s) 27, 451
BssAI RCCGGY 2 cut(s) 113, 119
BssMI GATC 2 cut(s) 4, 375
BssNI GRCGYC 1 cut(s) 117
Bst2UI CCWGG 1 cut(s) 88
BstACI GRCGYC 1 cut(s) 117
BstC8I GCNNGC 3 cut(s) 93, 115, 496
BstDEI CTNAG 2 cut(s) 149, 218
BstF5I GGATG 1 cut(s) 156
BstFNI CGCG 1 cut(s) 181
BstH2I RGCGCY 1 cut(s) 120
BstHHI GCGC 1 cut(s) 119
BstKTI GATC 2 cut(s) 7, 378
BstMAI GTCTC 1 cut(s) 54
BstMBI GATC 2 cut(s) 4, 375
BstMCI CGRYCG 1 cut(s) 169
BstMWI GCNNNNNNNGC 1 cut(s) 248
BstNI CCWGG 1 cut(s) 88
BstNSI RCATGY 1 cut(s) 494
BstSCI CCNGG 1 cut(s) 86
BstUI CGCG 1 cut(s) 181
BsuRI GGCC 3 cut(s) 41, 80, 303
BtsCI GGATG 1 cut(s) 156
BtsIMutI CAGTG 1 cut(s) 327
Cac8I GCNNGC 3 cut(s) 93, 115, 496
CciI TCATGA 1 cut(s) 361
CfoI GCGC 1 cut(s) 119
Cfr10I RCCGGY 2 cut(s) 113, 119
Cfr13I GGNCC 2 cut(s) 122, 301
CpoI CGGWCCG 1 cut(s) 122
Csp6I GTAC 1 cut(s) 195
CspI CGGWCCG 1 cut(s) 122
CviAII CATG 3 cut(s) 293, 362, 491
CviJI RGCY 9 cut(s) 41, 58, 80, 91, 113, 129, 242, 303, 358
CviKI_1 RGCY 9 cut(s) 41, 58, 80, 91, 113, 129, 242, 303, 358
CviQI GTAC 1 cut(s) 195
DdeI CTNAG 2 cut(s) 149, 218
DinI GGCGCC 1 cut(s) 118
DpnI GATC 2 cut(s) 6, 377
DpnII GATC 2 cut(s) 4, 375
DriI GACNNNNNGTC 2 cut(s) 70, 188
Eam1105I GACNNNNNGTC 2 cut(s) 70, 188
EciI GGCGGA 1 cut(s) 90
Eco31I GGTCTC 1 cut(s) 54
Eco47I GGWCC 1 cut(s) 122
Eco57I CTGAAG 1 cut(s) 483
EcoO109I RGGNCCY 1 cut(s) 301
EcoRII CCWGG 1 cut(s) 86
EgeI GGCGCC 1 cut(s) 118
EheI GGCGCC 1 cut(s) 118
FaeI CATG 3 cut(s) 296, 365, 494
FaqI GGGAC 1 cut(s) 191
FatI CATG 3 cut(s) 292, 361, 490
FblI GTMKAC 3 cut(s) 165, 469, 487
FokI GGATG 1 cut(s) 143
FspBI CTAG 1 cut(s) 495
GlaI GCGC 1 cut(s) 118
GsuI CTGGAG 1 cut(s) 74
HaeII RGCGCY 1 cut(s) 120
HaeIII GGCC 3 cut(s) 41, 80, 303
HapII CCGG 2 cut(s) 114, 120
HhaI GCGC 1 cut(s) 119
Hin1I GRCGYC 1 cut(s) 117
Hin1II CATG 3 cut(s) 296, 365, 494
Hin6I GCGC 1 cut(s) 117
HinP1I GCGC 1 cut(s) 117
HincII GTYRAC 3 cut(s) 166, 348, 470
HindII GTYRAC 3 cut(s) 166, 348, 470
HindIII AAGCTT 1 cut(s) 356
HinfI GANTC 2 cut(s) 71, 183
HpaII CCGG 2 cut(s) 114, 120
HphI GGTGA 2 cut(s) 98, 370
Hpy166II GTNNAC 4 cut(s) 166, 348, 470, 488
Hpy188I TCNGA 4 cut(s) 9, 76, 126, 152
Hpy188III TCNNGA 3 cut(s) 53, 362, 414
Hpy8I GTNNAC 4 cut(s) 166, 348, 470, 488
Hpy99I CGWCG 3 cut(s) 68, 71, 191
HpyAV CCTTC 4 cut(s) 8, 31, 228, 458
HpyCH4IV ACGT 1 cut(s) 315
HpyCH4V TGCA 3 cut(s) 251, 257, 333
HpyF10VI GCNNNNNNNGC 1 cut(s) 248
HpyF3I CTNAG 2 cut(s) 149, 218
HpySE526I ACGT 1 cut(s) 315
Hsp92I GRCGYC 1 cut(s) 117
Hsp92II CATG 3 cut(s) 296, 365, 494
HspAI GCGC 1 cut(s) 117
KasI GGCGCC 1 cut(s) 116
KroI GCCGGC 1 cut(s) 113
KroNI GCCGGC 1 cut(s) 115
Kzo9I GATC 2 cut(s) 4, 375
LmnI GCTCC 1 cut(s) 55
LpnPI CCDG 8 cut(s) 38, 40, 73, 100, 127, 133, 399, 432
LweI GCATC 2 cut(s) 165, 342
MaeI CTAG 1 cut(s) 495
MaeII ACGT 1 cut(s) 315
MaeIII GTNAC 1 cut(s) 442
MalI GATC 2 cut(s) 6, 377
MboI GATC 2 cut(s) 4, 375
MfeI CAATTG 1 cut(s) 252
MluCI AATT 2 cut(s) 252, 368
Mly113I GGCGCC 1 cut(s) 117
MlyI GAGTC 2 cut(s) 80, 177
MroNI GCCGGC 1 cut(s) 113
MspI CCGG 2 cut(s) 114, 120
MspR9I CCNGG 1 cut(s) 88
MunI CAATTG 1 cut(s) 252
MvaI CCWGG 1 cut(s) 88
MvnI CGCG 1 cut(s) 181
MwoI GCNNNNNNNGC 1 cut(s) 248
NaeI GCCGGC 1 cut(s) 115
NarI GGCGCC 1 cut(s) 117
NdeII GATC 2 cut(s) 4, 375
NgoMIV GCCGGC 1 cut(s) 113
NheI GCTAGC 1 cut(s) 494
NlaIII CATG 3 cut(s) 296, 365, 494
NlaIV GGNNCC 3 cut(s) 118, 177, 283
NspI RCATGY 1 cut(s) 494
PagI TCATGA 1 cut(s) 361
PdiI GCCGGC 1 cut(s) 115
PleI GAGTC 2 cut(s) 79, 177
PluTI GGCGCC 1 cut(s) 120
PpsI GAGTC 2 cut(s) 79, 177
Psp1406I AACGTT 1 cut(s) 315
Psp6I CCWGG 1 cut(s) 86
PspGI CCWGG 1 cut(s) 86
PspN4I GGNNCC 3 cut(s) 118, 177, 283
PspPI GGNCC 2 cut(s) 122, 301
RsaI GTAC 1 cut(s) 196
RsaNI GTAC 1 cut(s) 195
Rsr2I CGGWCCG 1 cut(s) 122
RsrII CGGWCCG 1 cut(s) 122
SalI GTCGAC 2 cut(s) 164, 468
Sau3AI GATC 2 cut(s) 4, 375
Sau96I GGNCC 2 cut(s) 122, 301
SchI GAGTC 2 cut(s) 80, 177
ScrFI CCNGG 1 cut(s) 88
SfaNI GCATC 2 cut(s) 165, 342
SfoI GGCGCC 1 cut(s) 118
SinI GGWCC 1 cut(s) 122
SmlI CTYRAG 1 cut(s) 382
SmoI CTYRAG 1 cut(s) 382
Sse9I AATT 2 cut(s) 252, 368
SsiI CCGC 2 cut(s) 101, 179
SspDI GGCGCC 1 cut(s) 116
SspMI CTAG 1 cut(s) 495
StyD4I CCNGG 1 cut(s) 86
TaiI ACGT 1 cut(s) 318
TaqI TCGA 2 cut(s) 165, 469
TaqII GACCGA 2 cut(s) 77, 183
TasI AATT 2 cut(s) 252, 368
TatI WGTACW 1 cut(s) 194
TscAI CASTG 1 cut(s) 327
TspDTI ATGAA 7 cut(s) 27, 281, 285, 326, 350, 381, 465
TspRI CASTG 1 cut(s) 327
VpaK11BI GGWCC 1 cut(s) 122
XceI RCATGY 1 cut(s) 494
XcmI CCANNNNNNNNNTGG 1 cut(s) 49
XmiI GTMKAC 3 cut(s) 165, 469, 487
XspI CTAG 1 cut(s) 495
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.