MD03G1077500.v1.1

Acyl-coenzyme A thioesterase 13-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0000478
Physical Location & Seq
Forward (+)
6287468 .. 6291831
4364 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1077500.v1.1.491

Sequence Viewer

Length: 564 bp
ATGTCAAACAGTCAAGTCGCACTGAGTTGGTTTCCGATCCAATGGAATGAAGGTTATAGATTTGGGGAAAGGGAAGTCAAGATGGAGAAGGCGAAGAAGCGTCTGGAGCTGAACTCGGACGAGTCAGAGACCGTGTCGCGAGTCGCCATCCCAGCTCTCCAAATCGGAAAGTCCAGCTTCTACGATGCCTTCGCTCTGAGAGGTATCCGAGTCGAGCGAGTCGAACCCGGTGTCGTCATCTGTTCTTTCAAGGTCCCTCCCCGCCTCATCGATAGAGATGGAACTTTGGCAAATGGTGCAATTGCAAACCTCGTTGATATAGTTGGTGGTTCCTTAGCTTTTATTCCGGACCTCCCTATGAATGTTTCTGTCGACATATCCGTCTCTTATGTCTCAACTGCCAAGGTTCATGACGAGCTAGAGATAACTTCGAGGGTTTTAGGACGAGCAGGAGGATACTGTGGAACAATAGTAACATTCAGAAATAAATCAACGGGAGAGATAATAGCTGAAGGTCGACATTCATTGTTTCGTTCAAATGCTGGTCCCGTTCCCAAACTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
4HBT

Protein Analysis

188

Amino Acids

20.44

Weight (kDa)

8.58

Isoelectric Point (pI)

31.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000478)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29590
fragaria_vesca FvH4_3g37930 FvH4_3g37930 FvH4_3g37970 FvH4_3g37990 FvH4_3g37990 FvH4_3g38000 FvH4_3g38010 FvH4_3g38050 FvH4_3g38060
malus_domestica MD03G1077300.v1.1 MD03G1077400.v1.1 MD03G1077500.v1.1 MD08G1031500.v1.1 MD11G1081500.v1.1 MD11G1081600.v1.1 MD11G1081700.v1.1 MD11G1081800.v1.1 MD11G1081900.v1.1
prunus_persica Prupe.6G061800_v2.0.a1 Prupe.6G061900_v2.0.a1 Prupe.6G062000_v2.0.a1 Prupe.6G062000_v2.0.a1 Prupe.6G062100_v2.0.a1 Prupe.6G062100_v2.0.a1 Prupe.6G062200_v2.0.a1 Prupe.6G062300_v2.0.a1
pyrus_communis pycom03g06110 pycom03g06120 pycom03g06130 pycom11g06960 pycom11g06970 pycom11g06980 pycom11g07020
rosa_chinensis RchiOBHm_Chr5g0068361 RchiOBHm_Chr5g0068381 RchiOBHm_Chr5g0068391 RchiOBHm_Chr5g0068401 RchiOBHm_Chr5g0068411 RchiOBHm_Chr5g0068441
rosa_laevigata RLG00000035969 RLG00000035971 RLG00000035972 RLG00000035973 RLG00000035974
rosa_multiflora Rmu_sc0001418.1_g000002 Rmu_sc0003450.1_g000002 Rmu_sc0003450.1_g000003 Rmu_sc0003450.1_g000004 Rmu_sc0003450.1_g000007 Rmu_sc0005087.1_g000001 Rmu_sc0006054.1_g000001
rosa_roxburghii Rroxscaffold_1G00012370 Rroxscaffold_1G00012380 Rroxscaffold_1G00012390 Rroxscaffold_1G00012400 Rroxscaffold_1G00012420 Rroxscaffold_1G00013110 Rroxscaffold_1G00013120 Rroxscaffold_1G00013130 Rroxscaffold_1G00013150 Rroxscaffold_1G00013160
rosa_rugosa Rorug05G0389200 Rorug05G0389400 Rorug05G0389500 Rorug05G0389600 Rorug05G0389600
rosa_samantha Rh5AG447900 Rh5AG448100 Rh5AG448200 Rh5AG448300 Rh5AG448400 Rh5BG465700 Rh5BG465900 Rh5BG466200 Rh5BG466300 Rh5BG466700 Rh5CG487500 Rh5CG487800 Rh5CG487900 Rh5CG488300 Rh5DG479500 Rh5DG479700 Rh5DG479800 Rh5DG480100
rosa_wichuraiana Rw5G041800 Rw5G041830 Rw5G041840 Rw5G041850 Rw5G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 380
AccI GTMKAC 2 cut(s) 372, 517
AccII CGCG 1 cut(s) 139
AccIII TCCGGA 1 cut(s) 346
AciI CCGC 1 cut(s) 262
AclWI GGATC 1 cut(s) 31
AcuI CTGAAG 1 cut(s) 531
AgsI TTSAA 2 cut(s) 250, 537
AluBI AGCT 6 cut(s) 109, 155, 177, 338, 418, 509
AluI AGCT 6 cut(s) 109, 155, 177, 338, 418, 509
Alw26I GTCTC 3 cut(s) 122, 388, 397
AlwI GGATC 1 cut(s) 31
Aor13HI TCCGGA 1 cut(s) 346
ArsI GACNNNNNNTTYG 2 cut(s) 216, 248
AspS9I GGNCC 3 cut(s) 253, 349, 545
AsuC2I CCSGG 1 cut(s) 228
AvaII GGWCC 3 cut(s) 253, 349, 545
BccI CCATC 3 cut(s) 76, 155, 272
BciVI GTATCC 2 cut(s) 215, 449
BcnI CCSGG 1 cut(s) 228
BcoDI GTCTC 3 cut(s) 122, 388, 397
BfaI CTAG 1 cut(s) 419
BfuI GTATCC 2 cut(s) 215, 449
Bme1390I CCNGG 1 cut(s) 228
Bme18I GGWCC 3 cut(s) 253, 349, 545
BmgT120I GGNCC 3 cut(s) 253, 349, 545
BmiI GGNNCC 3 cut(s) 255, 331, 547
BmrFI CCNGG 1 cut(s) 228
BmsI GCATC 1 cut(s) 175
BplI GAGNNNNNCTC 2 cut(s) 98, 130
BpmI CTGGAG 1 cut(s) 125
Bpu10I CCTNAGC 1 cut(s) 334
BpuMI CCSGG 1 cut(s) 228
Bsa29I ATCGAT 1 cut(s) 270
BsaI GGTCTC 1 cut(s) 122
BsaJI CCNNGG 1 cut(s) 402
BsaWI WCCGGW 1 cut(s) 346
BseAI TCCGGA 1 cut(s) 346
BseCI ATCGAT 1 cut(s) 270
BseDI CCNNGG 1 cut(s) 402
BseGI GGATG 1 cut(s) 147
BseMII CTCAG 2 cut(s) 14, 188
BseYI CCCAGC 1 cut(s) 151
Bsh1236I CGCG 1 cut(s) 139
BshVI ATCGAT 1 cut(s) 270
BsiSI CCGG 2 cut(s) 228, 347
BslFI GGGAC 2 cut(s) 239, 531
BsmAI GTCTC 3 cut(s) 122, 388, 397
BsmBI CGTCTC 1 cut(s) 388
BsmFI GGGAC 2 cut(s) 239, 531
Bso31I GGTCTC 1 cut(s) 122
Bsp13I TCCGGA 1 cut(s) 346
Bsp143I GATC 1 cut(s) 36
Bsp68I TCGCGA 1 cut(s) 139
BspACI CCGC 1 cut(s) 262
BspCNI CTCAG 2 cut(s) 15, 189
BspDI ATCGAT 1 cut(s) 270
BspEI TCCGGA 1 cut(s) 346
BspFNI CGCG 1 cut(s) 139
BspHI TCATGA 1 cut(s) 409
BspLI GGNNCC 3 cut(s) 255, 331, 547
BspPI GGATC 1 cut(s) 31
BspTNI GGTCTC 1 cut(s) 122
BssECI CCNNGG 1 cut(s) 402
BssMI GATC 1 cut(s) 36
BssT1I CCWWGG 1 cut(s) 402
Bst4CI ACNGT 3 cut(s) 11, 133, 461
BstAPI GCANNNNNTGC 1 cut(s) 296
BstDEI CTNAG 3 cut(s) 23, 197, 334
BstF5I GGATG 1 cut(s) 147
BstFNI CGCG 1 cut(s) 139
BstKTI GATC 1 cut(s) 39
BstMAI GTCTC 3 cut(s) 122, 388, 397
BstMBI GATC 1 cut(s) 36
BstMWI GCNNNNNNNGC 3 cut(s) 106, 152, 296
BstSCI CCNGG 1 cut(s) 226
BstUI CGCG 1 cut(s) 139
Bsu15I ATCGAT 1 cut(s) 270
BsuI GTATCC 2 cut(s) 215, 449
BsuTUI ATCGAT 1 cut(s) 270
BtsCI GGATG 1 cut(s) 147
BtsIMutI CAGTG 1 cut(s) 20
BtuMI TCGCGA 1 cut(s) 139
CciI TCATGA 1 cut(s) 409
Cfr13I GGNCC 3 cut(s) 253, 349, 545
ClaI ATCGAT 1 cut(s) 270
CseI GACGC 1 cut(s) 89
CviAII CATG 1 cut(s) 410
CviJI RGCY 6 cut(s) 109, 155, 177, 338, 418, 509
CviKI_1 RGCY 6 cut(s) 109, 155, 177, 338, 418, 509
DdeI CTNAG 3 cut(s) 23, 197, 334
DpnI GATC 1 cut(s) 38
DpnII GATC 1 cut(s) 36
DrdI GACNNNNNNGTC 1 cut(s) 380
DseDI GACNNNNNNGTC 1 cut(s) 380
Eco130I CCWWGG 1 cut(s) 402
Eco31I GGTCTC 1 cut(s) 122
Eco47I GGWCC 3 cut(s) 253, 349, 545
Eco57I CTGAAG 1 cut(s) 531
EcoO109I RGGNCCY 1 cut(s) 253
EcoT14I CCWWGG 1 cut(s) 402
ErhI CCWWGG 1 cut(s) 402
Esp3I CGTCTC 1 cut(s) 388
FaeI CATG 1 cut(s) 413
FaiI YATR 6 cut(s) 57, 320, 359, 377, 390, 411
FalI AAGNNNNNCTT 2 cut(s) 161, 193
FaqI GGGAC 2 cut(s) 239, 531
FatI CATG 1 cut(s) 409
FauI CCCGC 1 cut(s) 269
FblI GTMKAC 2 cut(s) 372, 517
FokI GGATG 1 cut(s) 134
FspBI CTAG 1 cut(s) 419
GsaI CCCAGC 1 cut(s) 155
GsuI CTGGAG 1 cut(s) 125
HapII CCGG 2 cut(s) 228, 347
HgaI GACGC 1 cut(s) 89
Hin1II CATG 1 cut(s) 413
HincII GTYRAC 2 cut(s) 373, 518
HindII GTYRAC 2 cut(s) 373, 518
HinfI GANTC 4 cut(s) 122, 141, 210, 219
HpaII CCGG 2 cut(s) 228, 347
Hpy166II GTNNAC 2 cut(s) 373, 518
Hpy188I TCNGA 8 cut(s) 36, 118, 127, 167, 198, 209, 482, 563
Hpy188III TCNNGA 5 cut(s) 79, 104, 138, 347, 410
Hpy8I GTNNAC 2 cut(s) 373, 518
HpyAV CCTTC 4 cut(s) 44, 82, 199, 506
HpyCH4III ACNGT 3 cut(s) 11, 133, 461
HpyCH4V TGCA 2 cut(s) 299, 305
HpyF10VI GCNNNNNNNGC 3 cut(s) 106, 152, 296
HpyF3I CTNAG 3 cut(s) 23, 197, 334
Hsp92II CATG 1 cut(s) 413
Kpn2I TCCGGA 1 cut(s) 346
Kzo9I GATC 1 cut(s) 36
LmnI GCTCC 1 cut(s) 106
LpnPI CCDG 7 cut(s) 89, 165, 187, 241, 360, 435, 528
LweI GCATC 1 cut(s) 175
MaeI CTAG 1 cut(s) 419
MaeIII GTNAC 1 cut(s) 472
MalI GATC 1 cut(s) 38
MboI GATC 1 cut(s) 36
MboII GAAGA 1 cut(s) 106
MfeI CAATTG 1 cut(s) 300
MluCI AATT 1 cut(s) 300
MlyI GAGTC 4 cut(s) 131, 150, 219, 228
MnlI CCTC 7 cut(s) 194, 267, 275, 320, 362, 426, 446
MroI TCCGGA 1 cut(s) 346
MspI CCGG 2 cut(s) 228, 347
MspR9I CCNGG 1 cut(s) 228
MunI CAATTG 1 cut(s) 300
MvnI CGCG 1 cut(s) 139
MwoI GCNNNNNNNGC 3 cut(s) 106, 152, 296
NciI CCSGG 1 cut(s) 228
NdeII GATC 1 cut(s) 36
NlaIII CATG 1 cut(s) 413
NlaIV GGNNCC 3 cut(s) 255, 331, 547
NruI TCGCGA 1 cut(s) 139
PagI TCATGA 1 cut(s) 409
PcsI WCGNNNNNNNCGW 2 cut(s) 219, 378
PflFI GACNNNGTC 1 cut(s) 133
PleI GAGTC 4 cut(s) 130, 149, 218, 227
PpsI GAGTC 4 cut(s) 130, 149, 218, 227
PpuMI RGGWCCY 1 cut(s) 253
Psp5II RGGWCCY 1 cut(s) 253
PspFI CCCAGC 1 cut(s) 151
PspN4I GGNNCC 3 cut(s) 255, 331, 547
PspPI GGNCC 3 cut(s) 253, 349, 545
PspPPI RGGWCCY 1 cut(s) 253
PsyI GACNNNGTC 1 cut(s) 133
RruI TCGCGA 1 cut(s) 139
SalI GTCGAC 2 cut(s) 371, 516
Sau3AI GATC 1 cut(s) 36
Sau96I GGNCC 3 cut(s) 253, 349, 545
SchI GAGTC 4 cut(s) 131, 150, 219, 228
ScrFI CCNGG 1 cut(s) 228
SfaNI GCATC 1 cut(s) 175
SinI GGWCC 3 cut(s) 253, 349, 545
Sse9I AATT 1 cut(s) 300
SsiI CCGC 1 cut(s) 262
SspMI CTAG 1 cut(s) 419
StyD4I CCNGG 1 cut(s) 226
StyI CCWWGG 1 cut(s) 402
TaaI ACNGT 3 cut(s) 11, 133, 461
TaqI TCGA 6 cut(s) 213, 222, 270, 372, 431, 517
TasI AATT 1 cut(s) 300
TscAI CASTG 1 cut(s) 27
TspDTI ATGAA 4 cut(s) 63, 374, 398, 513
TspGWI ACGGA 1 cut(s) 370
TspRI CASTG 1 cut(s) 27
Tth111I GACNNNGTC 1 cut(s) 133
VpaK11BI GGWCC 3 cut(s) 253, 349, 545
XmiI GTMKAC 2 cut(s) 372, 517
XspI CTAG 1 cut(s) 419
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.