Prupe.6G061900_v2.0.a1

Acyl-coenzyme A thioesterase 13-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000478
Physical Location & Seq
Forward (+)
4277505 .. 4278993
1489 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G061900.1

Sequence Viewer

Length: 480 bp
ATGGAGGACGCGAAGAAGTGTTTAGAGCTGACGCCGGACGAGTCAGAGGCCGTGTCACGAGTCGTCGTTCCAGAAATCCGAGTCGGAAAAGAGCCGAGTTTGTACGATCTTTTCGCTACGACAGGCATCCGAGTCGACCGAGTCGAACCCGGATTCGCCGTCTGTTCTTTCAAGGTCCCTCCTCGCCTCACCGATAAAGATGGAAATCTGTCTAATGGTGCAATTGCAAACCTTGTTGATGTAGCTGGTGCTTCTCTTATTTATGTTATGGGTCTCCCCATGAACGTTTCAGTGGACATGTCCATCTCCTATGTGTCAAAGGCGAAGATTGATGATGAGTTAGAGATCACCTCAAAAAGGTTAGGACAAAAAGGCGGTTATTCTGGAACATCAGTCCTGATGAGAAACAAAGCAACTGGGGAGATTGTAGCCGAAGGTCGACATTCATTGTTTCGTTCACCTGCTGCTAGCAAACTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
4HBT

Protein Analysis

160

Amino Acids

17.06

Weight (kDa)

5.89

Isoelectric Point (pI)

30.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000478)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29590
fragaria_vesca FvH4_3g37930 FvH4_3g37930 FvH4_3g37970 FvH4_3g37990 FvH4_3g37990 FvH4_3g38000 FvH4_3g38010 FvH4_3g38050 FvH4_3g38060
malus_domestica MD03G1077300.v1.1 MD03G1077400.v1.1 MD03G1077500.v1.1 MD08G1031500.v1.1 MD11G1081500.v1.1 MD11G1081600.v1.1 MD11G1081700.v1.1 MD11G1081800.v1.1 MD11G1081900.v1.1
prunus_persica Prupe.6G061800_v2.0.a1 Prupe.6G061900_v2.0.a1 Prupe.6G062000_v2.0.a1 Prupe.6G062000_v2.0.a1 Prupe.6G062100_v2.0.a1 Prupe.6G062100_v2.0.a1 Prupe.6G062200_v2.0.a1 Prupe.6G062300_v2.0.a1
pyrus_communis pycom03g06110 pycom03g06120 pycom03g06130 pycom11g06960 pycom11g06970 pycom11g06980 pycom11g07020
rosa_chinensis RchiOBHm_Chr5g0068361 RchiOBHm_Chr5g0068381 RchiOBHm_Chr5g0068391 RchiOBHm_Chr5g0068401 RchiOBHm_Chr5g0068411 RchiOBHm_Chr5g0068441
rosa_laevigata RLG00000035969 RLG00000035971 RLG00000035972 RLG00000035973 RLG00000035974
rosa_multiflora Rmu_sc0001418.1_g000002 Rmu_sc0003450.1_g000002 Rmu_sc0003450.1_g000003 Rmu_sc0003450.1_g000004 Rmu_sc0003450.1_g000007 Rmu_sc0005087.1_g000001 Rmu_sc0006054.1_g000001
rosa_roxburghii Rroxscaffold_1G00012370 Rroxscaffold_1G00012380 Rroxscaffold_1G00012390 Rroxscaffold_1G00012400 Rroxscaffold_1G00012420 Rroxscaffold_1G00013110 Rroxscaffold_1G00013120 Rroxscaffold_1G00013130 Rroxscaffold_1G00013150 Rroxscaffold_1G00013160
rosa_rugosa Rorug05G0389200 Rorug05G0389400 Rorug05G0389500 Rorug05G0389600 Rorug05G0389600
rosa_samantha Rh5AG447900 Rh5AG448100 Rh5AG448200 Rh5AG448300 Rh5AG448400 Rh5BG465700 Rh5BG465900 Rh5BG466200 Rh5BG466300 Rh5BG466700 Rh5CG487500 Rh5CG487800 Rh5CG487900 Rh5CG488300 Rh5DG479500 Rh5DG479700 Rh5DG479800 Rh5DG480100
rosa_wichuraiana Rw5G041800 Rw5G041830 Rw5G041840 Rw5G041850 Rw5G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 469
Acc36I ACCTGC 1 cut(s) 469
AccI GTMKAC 2 cut(s) 135, 439
AccII CGCG 1 cut(s) 11
AciI CCGC 1 cut(s) 375
AclI AACGTT 1 cut(s) 285
AcyI GRCGYC 1 cut(s) 32
AfaI GTAC 1 cut(s) 104
AfiI CCNNNNNNNGG 1 cut(s) 357
AflIII ACRYGT 1 cut(s) 297
AgsI TTSAA 1 cut(s) 172
AluBI AGCT 2 cut(s) 28, 245
AluI AGCT 2 cut(s) 28, 245
Alw26I GTCTC 1 cut(s) 278
AoxI GGCC 1 cut(s) 48
ApeKI GCWGC 1 cut(s) 464
AspS9I GGNCC 1 cut(s) 175
AsuC2I CCSGG 1 cut(s) 150
AsuHPI GGTGA 3 cut(s) 181, 340, 450
AsuNHI GCTAGC 1 cut(s) 467
AvaII GGWCC 1 cut(s) 175
BauI CACGAG 1 cut(s) 57
BbvI GCAGC 1 cut(s) 451
BccI CCATC 2 cut(s) 194, 311
BceAI ACGGC 2 cut(s) 35, 143
BcgI CGANNNNNNTGC 2 cut(s) 115, 149
BcnI CCSGG 1 cut(s) 150
BcoDI GTCTC 1 cut(s) 278
BfaI CTAG 1 cut(s) 468
BfuAI ACCTGC 1 cut(s) 469
BisI GCNGC 1 cut(s) 465
BlsI GCNGC 1 cut(s) 466
Bme1390I CCNGG 1 cut(s) 150
Bme18I GGWCC 1 cut(s) 175
BmgT120I GGNCC 1 cut(s) 175
BmiI GGNNCC 1 cut(s) 177
BmrFI CCNGG 1 cut(s) 150
BmrI ACTGGG 1 cut(s) 426
BmsI GCATC 1 cut(s) 135
BmtI GCTAGC 1 cut(s) 471
BmuI ACTGGG 1 cut(s) 426
BplI GAGNNNNNCTC 2 cut(s) 335, 367
BpuMI CCSGG 1 cut(s) 150
BsaBI GATNNNNATC 1 cut(s) 204
BsaHI GRCGYC 1 cut(s) 32
BsaI GGTCTC 1 cut(s) 278
Bsc4I CCNNNNNNNGG 1 cut(s) 357
Bse1I ACTGG 1 cut(s) 421
Bse8I GATNNNNATC 1 cut(s) 204
BseGI GGATG 1 cut(s) 126
BseJI GATNNNNATC 1 cut(s) 204
BseLI CCNNNNNNNGG 1 cut(s) 357
BseNI ACTGG 1 cut(s) 421
BseRI GAGGAG 1 cut(s) 171
BseXI GCAGC 1 cut(s) 451
Bsh1236I CGCG 1 cut(s) 11
Bsh1285I CGRYCG 1 cut(s) 139
BshFI GGCC 1 cut(s) 50
BsiEI CGRYCG 1 cut(s) 139
BsiSI CCGG 2 cut(s) 35, 150
BslFI GGGAC 1 cut(s) 161
BslI CCNNNNNNNGG 1 cut(s) 357
BsmAI GTCTC 1 cut(s) 278
BsmFI GGGAC 1 cut(s) 161
BsnI GGCC 1 cut(s) 50
Bso31I GGTCTC 1 cut(s) 278
Bsp143I GATC 2 cut(s) 106, 345
BspACI CCGC 1 cut(s) 375
BspANI GGCC 1 cut(s) 50
BspFNI CGCG 1 cut(s) 11
BspLI GGNNCC 1 cut(s) 177
BspMI ACCTGC 1 cut(s) 469
BspOI GCTAGC 1 cut(s) 471
BspTNI GGTCTC 1 cut(s) 278
BsrI ACTGG 1 cut(s) 421
BssMI GATC 2 cut(s) 106, 345
BssNI GRCGYC 1 cut(s) 32
BssSI CACGAG 1 cut(s) 57
Bst2BI CACGAG 1 cut(s) 57
BstACI GRCGYC 1 cut(s) 32
BstC8I GCNNGC 1 cut(s) 469
BstENI CCTNNNNNAGG 1 cut(s) 355
BstF5I GGATG 1 cut(s) 126
BstFNI CGCG 1 cut(s) 11
BstKTI GATC 2 cut(s) 109, 348
BstMAI GTCTC 1 cut(s) 278
BstMBI GATC 2 cut(s) 106, 345
BstMCI CGRYCG 1 cut(s) 139
BstNSI RCATGY 1 cut(s) 301
BstSCI CCNGG 1 cut(s) 148
BstUI CGCG 1 cut(s) 11
BstV1I GCAGC 1 cut(s) 451
BsuRI GGCC 1 cut(s) 50
BtsCI GGATG 1 cut(s) 126
BtsIMutI CAGTG 1 cut(s) 297
BveI ACCTGC 1 cut(s) 469
Cac8I GCNNGC 1 cut(s) 469
Cfr13I GGNCC 1 cut(s) 175
CseI GACGC 2 cut(s) 17, 40
Csp6I GTAC 1 cut(s) 103
CviAII CATG 2 cut(s) 280, 298
CviJI RGCY 5 cut(s) 28, 50, 94, 245, 431
CviKI_1 RGCY 5 cut(s) 28, 50, 94, 245, 431
CviQI GTAC 1 cut(s) 103
DpnI GATC 2 cut(s) 108, 347
DpnII GATC 2 cut(s) 106, 345
Eco31I GGTCTC 1 cut(s) 278
Eco47I GGWCC 1 cut(s) 175
EcoNI CCTNNNNNAGG 1 cut(s) 355
EcoO109I RGGNCCY 1 cut(s) 175
FaeI CATG 2 cut(s) 283, 301
FaiI YATR 5 cut(s) 264, 269, 281, 299, 312
FaqI GGGAC 1 cut(s) 161
FatI CATG 2 cut(s) 279, 297
FblI GTMKAC 2 cut(s) 135, 439
Fnu4HI GCNGC 1 cut(s) 465
FokI GGATG 1 cut(s) 113
Fsp4HI GCNGC 1 cut(s) 465
FspBI CTAG 1 cut(s) 468
GluI GCNGC 1 cut(s) 465
HaeIII GGCC 1 cut(s) 50
HapII CCGG 2 cut(s) 35, 150
HgaI GACGC 2 cut(s) 17, 40
Hin1I GRCGYC 1 cut(s) 32
Hin1II CATG 2 cut(s) 283, 301
HincII GTYRAC 2 cut(s) 136, 440
HindII GTYRAC 2 cut(s) 136, 440
HinfI GANTC 6 cut(s) 41, 60, 81, 132, 141, 153
HpaII CCGG 2 cut(s) 35, 150
HphI GGTGA 3 cut(s) 181, 340, 450
Hpy166II GTNNAC 4 cut(s) 136, 295, 440, 458
Hpy188I TCNGA 5 cut(s) 46, 80, 86, 131, 479
Hpy188III TCNNGA 4 cut(s) 57, 71, 384, 397
Hpy8I GTNNAC 4 cut(s) 136, 295, 440, 458
Hpy99I CGWCG 1 cut(s) 68
HpyAV CCTTC 1 cut(s) 428
HpyCH4IV ACGT 1 cut(s) 285
HpyCH4V TGCA 2 cut(s) 221, 227
HpySE526I ACGT 1 cut(s) 285
Hsp92I GRCGYC 1 cut(s) 32
Hsp92II CATG 2 cut(s) 283, 301
Kzo9I GATC 2 cut(s) 106, 345
LpnPI CCDG 9 cut(s) 48, 84, 108, 163, 231, 369, 402, 410, 474
Lsp1109I GCAGC 1 cut(s) 451
LweI GCATC 1 cut(s) 135
MaeI CTAG 1 cut(s) 468
MaeII ACGT 1 cut(s) 285
MaeIII GTNAC 1 cut(s) 54
MalI GATC 2 cut(s) 108, 347
MboI GATC 2 cut(s) 106, 345
MboII GAAGA 2 cut(s) 25, 337
MfeI CAATTG 1 cut(s) 222
MluCI AATT 1 cut(s) 222
MlyI GAGTC 5 cut(s) 50, 69, 90, 141, 150
MmeI TCCRAC 1 cut(s) 64
MnlI CCTC 5 cut(s) 40, 189, 192, 197, 361
MspI CCGG 2 cut(s) 35, 150
MspR9I CCNGG 1 cut(s) 150
MunI CAATTG 1 cut(s) 222
MvnI CGCG 1 cut(s) 11
NciI CCSGG 1 cut(s) 150
NdeII GATC 2 cut(s) 106, 345
NheI GCTAGC 1 cut(s) 467
NlaIII CATG 2 cut(s) 283, 301
NlaIV GGNNCC 1 cut(s) 177
NmeAIII GCCGAG 1 cut(s) 120
NmuCI GTSAC 1 cut(s) 54
NspI RCATGY 1 cut(s) 301
PaqCI CACCTGC 1 cut(s) 469
PciI ACATGT 1 cut(s) 297
PcsI WCGNNNNNNNCGW 1 cut(s) 141
PfeI GAWTC 1 cut(s) 153
PflFI GACNNNGTC 1 cut(s) 140
PkrI GCNGC 1 cut(s) 466
PleI GAGTC 5 cut(s) 49, 68, 89, 140, 149
PpsI GAGTC 5 cut(s) 49, 68, 89, 140, 149
PpuMI RGGWCCY 1 cut(s) 175
PscI ACATGT 1 cut(s) 297
Psp1406I AACGTT 1 cut(s) 285
Psp5II RGGWCCY 1 cut(s) 175
PspN4I GGNNCC 1 cut(s) 177
PspPI GGNCC 1 cut(s) 175
PspPPI RGGWCCY 1 cut(s) 175
PsyI GACNNNGTC 1 cut(s) 140
RsaI GTAC 1 cut(s) 104
RsaNI GTAC 1 cut(s) 103
SalI GTCGAC 2 cut(s) 134, 438
SatI GCNGC 1 cut(s) 465
Sau3AI GATC 2 cut(s) 106, 345
Sau96I GGNCC 1 cut(s) 175
SchI GAGTC 5 cut(s) 50, 69, 90, 141, 150
ScrFI CCNGG 1 cut(s) 150
SetI ASST 9 cut(s) 30, 177, 234, 247, 288, 353, 362, 439, 463
SfaNI GCATC 1 cut(s) 135
SinI GGWCC 1 cut(s) 175
Sse9I AATT 1 cut(s) 222
SsiI CCGC 1 cut(s) 375
SspMI CTAG 1 cut(s) 468
StyD4I CCNGG 1 cut(s) 148
TaiI ACGT 1 cut(s) 288
TaqI TCGA 3 cut(s) 135, 144, 439
TaqII GACCGA 1 cut(s) 153
TasI AATT 1 cut(s) 222
TfiI GAWTC 1 cut(s) 153
TscAI CASTG 1 cut(s) 297
TseFI GTSAC 1 cut(s) 54
TseI GCWGC 1 cut(s) 464
Tsp45I GTSAC 1 cut(s) 54
TspDTI ATGAA 2 cut(s) 296, 435
TspRI CASTG 1 cut(s) 297
Tth111I GACNNNGTC 1 cut(s) 140
VpaK11BI GGWCC 1 cut(s) 175
XagI CCTNNNNNAGG 1 cut(s) 355
XceI RCATGY 1 cut(s) 301
XmiI GTMKAC 2 cut(s) 135, 439
XspI CTAG 1 cut(s) 468
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.