pycom11g06970

Acyl-coenzyme A thioesterase 13-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0000478
Physical Location & Seq
Forward (+)
5305340 .. 5307406
2067 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g06970.1

Sequence Viewer

Length: 591 bp
ATGACCTATTTTTACATACCATACACATTTTTTAATTTCCGACCTTACCCCAACAAAATCGGCTTTCCGAAATTATGCAGCCTTCAATGTGGACATTTTTGGGGTTTTCAAGGTTCTTATTCGTTGTTCCAGTCTTCCAAAGAGATGAGAGGAGAGAGTTTGGCTCCAATAATGGAGGATGCAAAGATGTATCTGGAAGTGACGCAGGACGAGTCAGAGGCTGTGTCGCGACTCGTTTTTCCAAGCGACAGGAGTATATACGATCATTTCGTTGAGTCAGGCATCCGAGTCGACCGTGTCCAACCCGGATTCGTCGTCTGCACTTTCAAAGTCCCTCCCCGCCTCACTGATAGAGCTGGAAATCTGGCTAATGGTGCAATTGCAACCCTTGTTGATGTAGTTGGTGCCTCTACTGTTTTTGTTCCACATATCCCTATGACCGTTTCCGTGGACATGTCCATCTCGTACATGGCAAAGGCGAAGCTTAATGATGAGTTAGTAGATCACCTCAAAACGGTTAGGACAAAGAGGTCGTTACTCTGGAACCCATGTACTTCTAAGAAACAAAGTATCTGGGGAGATTATTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
4HBT

Protein Analysis

197

Amino Acids

22.24

Weight (kDa)

8.24

Isoelectric Point (pI)

43.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
4HBT PF03061 120 - 179 2.6e-06 Thioesterase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000478)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29590
fragaria_vesca FvH4_3g37930 FvH4_3g37930 FvH4_3g37970 FvH4_3g37990 FvH4_3g37990 FvH4_3g38000 FvH4_3g38010 FvH4_3g38050 FvH4_3g38060
malus_domestica MD03G1077300.v1.1 MD03G1077400.v1.1 MD03G1077500.v1.1 MD08G1031500.v1.1 MD11G1081500.v1.1 MD11G1081600.v1.1 MD11G1081700.v1.1 MD11G1081800.v1.1 MD11G1081900.v1.1
prunus_persica Prupe.6G061800_v2.0.a1 Prupe.6G061900_v2.0.a1 Prupe.6G062000_v2.0.a1 Prupe.6G062000_v2.0.a1 Prupe.6G062100_v2.0.a1 Prupe.6G062100_v2.0.a1 Prupe.6G062200_v2.0.a1 Prupe.6G062300_v2.0.a1
pyrus_communis pycom03g06110 pycom03g06120 pycom03g06130 pycom11g06960 pycom11g06970 pycom11g06980 pycom11g07020
rosa_chinensis RchiOBHm_Chr5g0068361 RchiOBHm_Chr5g0068381 RchiOBHm_Chr5g0068391 RchiOBHm_Chr5g0068401 RchiOBHm_Chr5g0068411 RchiOBHm_Chr5g0068441
rosa_laevigata RLG00000035969 RLG00000035971 RLG00000035972 RLG00000035973 RLG00000035974
rosa_multiflora Rmu_sc0001418.1_g000002 Rmu_sc0003450.1_g000002 Rmu_sc0003450.1_g000003 Rmu_sc0003450.1_g000004 Rmu_sc0003450.1_g000007 Rmu_sc0005087.1_g000001 Rmu_sc0006054.1_g000001
rosa_roxburghii Rroxscaffold_1G00012370 Rroxscaffold_1G00012380 Rroxscaffold_1G00012390 Rroxscaffold_1G00012400 Rroxscaffold_1G00012420 Rroxscaffold_1G00013110 Rroxscaffold_1G00013120 Rroxscaffold_1G00013130 Rroxscaffold_1G00013150 Rroxscaffold_1G00013160
rosa_rugosa Rorug05G0389200 Rorug05G0389400 Rorug05G0389500 Rorug05G0389600 Rorug05G0389600
rosa_samantha Rh5AG447900 Rh5AG448100 Rh5AG448200 Rh5AG448300 Rh5AG448400 Rh5BG465700 Rh5BG465900 Rh5BG466200 Rh5BG466300 Rh5BG466700 Rh5CG487500 Rh5CG487800 Rh5CG487900 Rh5CG488300 Rh5DG479500 Rh5DG479700 Rh5DG479800 Rh5DG480100
rosa_wichuraiana Rw5G041800 Rw5G041830 Rw5G041840 Rw5G041850 Rw5G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 529
AccB1I GGYRCC 1 cut(s) 404
AccI GTMKAC 1 cut(s) 291
AccII CGCG 1 cut(s) 229
AciI CCGC 1 cut(s) 340
AfaI GTAC 2 cut(s) 467, 553
AfiI CCNNNNNNNGG 1 cut(s) 514
AflIII ACRYGT 1 cut(s) 453
AgsI TTSAA 3 cut(s) 86, 110, 328
AluBI AGCT 2 cut(s) 356, 484
AluI AGCT 2 cut(s) 356, 484
AlwNI CAGNNNCTG 1 cut(s) 221
ApeKI GCWGC 1 cut(s) 78
AsuC2I CCSGG 1 cut(s) 306
AsuHPI GGTGA 1 cut(s) 497
BanI GGYRCC 1 cut(s) 404
BbsI GAAGAC 1 cut(s) 126
BbvI GCAGC 1 cut(s) 90
BccI CCATC 1 cut(s) 467
BcgI CGANNNNNNTGC 2 cut(s) 271, 305
BcnI CCSGG 1 cut(s) 306
BisI GCNGC 1 cut(s) 79
BlsI GCNGC 1 cut(s) 80
Bme1390I CCNGG 1 cut(s) 306
BmiI GGNNCC 3 cut(s) 165, 406, 545
BmrFI CCNGG 1 cut(s) 306
BmsI GCATC 2 cut(s) 169, 291
BpiI GAAGAC 1 cut(s) 126
BplI GAGNNNNNCTC 2 cut(s) 148, 180
BpuMI CCSGG 1 cut(s) 306
BsaJI CCNNGG 1 cut(s) 447
Bsc4I CCNNNNNNNGG 1 cut(s) 514
Bse1I ACTGG 1 cut(s) 130
BseDI CCNNGG 1 cut(s) 447
BseGI GGATG 2 cut(s) 184, 282
BseLI CCNNNNNNNGG 1 cut(s) 514
BseNI ACTGG 1 cut(s) 130
BseRI GAGGAG 1 cut(s) 165
BseXI GCAGC 1 cut(s) 90
BsgI GTGCAG 1 cut(s) 304
Bsh1236I CGCG 1 cut(s) 229
Bsh1285I CGRYCG 1 cut(s) 295
BshNI GGYRCC 1 cut(s) 404
BsiEI CGRYCG 1 cut(s) 295
BsiSI CCGG 1 cut(s) 306
BslFI GGGAC 1 cut(s) 317
BslI CCNNNNNNNGG 1 cut(s) 514
BsmFI GGGAC 1 cut(s) 317
Bsp143I GATC 2 cut(s) 262, 502
Bsp68I TCGCGA 1 cut(s) 229
BspACI CCGC 1 cut(s) 340
BspFNI CGCG 1 cut(s) 229
BspLI GGNNCC 3 cut(s) 165, 406, 545
BspT107I GGYRCC 1 cut(s) 404
BsrI ACTGG 1 cut(s) 130
BssECI CCNNGG 1 cut(s) 447
BssMI GATC 2 cut(s) 262, 502
Bst4CI ACNGT 4 cut(s) 296, 415, 442, 517
BstDEI CTNAG 1 cut(s) 558
BstDSI CCRYGG 1 cut(s) 447
BstF5I GGATG 2 cut(s) 184, 282
BstFNI CGCG 1 cut(s) 229
BstKTI GATC 2 cut(s) 265, 505
BstMBI GATC 2 cut(s) 262, 502
BstMCI CGRYCG 1 cut(s) 295
BstMWI GCNNNNNNNGC 1 cut(s) 374
BstNSI RCATGY 1 cut(s) 457
BstSCI CCNGG 1 cut(s) 304
BstUI CGCG 1 cut(s) 229
BstV1I GCAGC 1 cut(s) 90
BstV2I GAAGAC 1 cut(s) 126
BtgI CCRYGG 1 cut(s) 447
BtsCI GGATG 2 cut(s) 184, 282
BtsIMutI CAGTG 1 cut(s) 345
BtuMI TCGCGA 1 cut(s) 229
CaiI CAGNNNCTG 1 cut(s) 221
CseI GACGC 1 cut(s) 211
Csp6I GTAC 2 cut(s) 466, 552
CviAII CATG 3 cut(s) 454, 469, 549
CviJI RGCY 7 cut(s) 63, 81, 164, 221, 356, 368, 484
CviKI_1 RGCY 7 cut(s) 63, 81, 164, 221, 356, 368, 484
CviQI GTAC 2 cut(s) 466, 552
DdeI CTNAG 1 cut(s) 558
DpnI GATC 2 cut(s) 264, 504
DpnII GATC 2 cut(s) 262, 502
DrdI GACNNNNNNGTC 1 cut(s) 529
DseDI GACNNNNNNGTC 1 cut(s) 529
FaeI CATG 3 cut(s) 457, 472, 552
FaqI GGGAC 1 cut(s) 317
FatI CATG 3 cut(s) 453, 468, 548
FauI CCCGC 1 cut(s) 347
FblI GTMKAC 1 cut(s) 291
Fnu4HI GCNGC 1 cut(s) 79
FokI GGATG 2 cut(s) 191, 269
Fsp4HI GCNGC 1 cut(s) 79
GluI GCNGC 1 cut(s) 79
HapII CCGG 1 cut(s) 306
HgaI GACGC 1 cut(s) 211
Hin1II CATG 3 cut(s) 457, 472, 552
HincII GTYRAC 1 cut(s) 292
HindII GTYRAC 1 cut(s) 292
HindIII AAGCTT 1 cut(s) 482
HinfI GANTC 5 cut(s) 212, 231, 275, 288, 309
HpaII CCGG 1 cut(s) 306
HphI GGTGA 1 cut(s) 497
Hpy166II GTNNAC 3 cut(s) 92, 292, 451
Hpy188I TCNGA 4 cut(s) 41, 69, 217, 287
Hpy188III TCNNGA 3 cut(s) 194, 228, 541
Hpy8I GTNNAC 3 cut(s) 92, 292, 451
Hpy99I CGWCG 1 cut(s) 317
HpyAV CCTTC 1 cut(s) 92
HpyCH4III ACNGT 4 cut(s) 296, 415, 442, 517
HpyCH4V TGCA 5 cut(s) 78, 182, 321, 377, 383
HpyF10VI GCNNNNNNNGC 1 cut(s) 374
HpyF3I CTNAG 1 cut(s) 558
Hsp92II CATG 3 cut(s) 457, 472, 552
Kzo9I GATC 2 cut(s) 262, 502
LmnI GCTCC 1 cut(s) 169
Lsp1109I GCAGC 1 cut(s) 90
LweI GCATC 2 cut(s) 169, 291
MaeIII GTNAC 2 cut(s) 199, 534
MalI GATC 2 cut(s) 264, 504
MboI GATC 2 cut(s) 262, 502
MboII GAAGA 1 cut(s) 126
MfeI CAATTG 1 cut(s) 378
MluCI AATT 3 cut(s) 34, 71, 378
MlyI GAGTC 4 cut(s) 221, 225, 284, 297
MmeI TCCRAC 2 cut(s) 64, 325
MnlI CCTC 8 cut(s) 143, 169, 211, 345, 353, 418, 518, 522
MseI TTAA 2 cut(s) 33, 486
MspI CCGG 1 cut(s) 306
MspR9I CCNGG 1 cut(s) 306
MunI CAATTG 1 cut(s) 378
MvnI CGCG 1 cut(s) 229
MwoI GCNNNNNNNGC 1 cut(s) 374
NciI CCSGG 1 cut(s) 306
NdeII GATC 2 cut(s) 262, 502
NlaIII CATG 3 cut(s) 457, 472, 552
NlaIV GGNNCC 3 cut(s) 165, 406, 545
NmuCI GTSAC 1 cut(s) 199
NruI TCGCGA 1 cut(s) 229
NspI RCATGY 1 cut(s) 457
PciI ACATGT 1 cut(s) 453
PcsI WCGNNNNNNNCGW 1 cut(s) 267
PfeI GAWTC 1 cut(s) 309
PflFI GACNNNGTC 1 cut(s) 296
PkrI GCNGC 1 cut(s) 80
PleI GAGTC 4 cut(s) 220, 225, 283, 296
PpsI GAGTC 4 cut(s) 220, 225, 283, 296
PscI ACATGT 1 cut(s) 453
PspN4I GGNNCC 3 cut(s) 165, 406, 545
PstNI CAGNNNCTG 1 cut(s) 221
PsyI GACNNNGTC 1 cut(s) 296
RruI TCGCGA 1 cut(s) 229
RsaI GTAC 2 cut(s) 467, 553
RsaNI GTAC 2 cut(s) 466, 552
SalI GTCGAC 1 cut(s) 290
SaqAI TTAA 2 cut(s) 33, 486
SatI GCNGC 1 cut(s) 79
Sau3AI GATC 2 cut(s) 262, 502
SchI GAGTC 4 cut(s) 221, 225, 284, 297
ScrFI CCNGG 1 cut(s) 306
SetI ASST 7 cut(s) 8, 46, 115, 358, 486, 510, 533
SfaNI GCATC 2 cut(s) 169, 291
Sse9I AATT 3 cut(s) 34, 71, 378
SsiI CCGC 1 cut(s) 340
StyD4I CCNGG 1 cut(s) 304
TaaI ACNGT 4 cut(s) 296, 415, 442, 517
TaqI TCGA 1 cut(s) 291
TasI AATT 3 cut(s) 34, 71, 378
TatI WGTACW 1 cut(s) 551
TfiI GAWTC 1 cut(s) 309
Tru1I TTAA 2 cut(s) 33, 486
Tru9I TTAA 2 cut(s) 33, 486
TscAI CASTG 1 cut(s) 352
TseFI GTSAC 1 cut(s) 199
TseI GCWGC 1 cut(s) 78
Tsp45I GTSAC 1 cut(s) 199
TspGWI ACGGA 1 cut(s) 436
TspRI CASTG 1 cut(s) 352
Tth111I GACNNNGTC 1 cut(s) 296
XceI RCATGY 1 cut(s) 457
XcmI CCANNNNNNNNNTGG 1 cut(s) 466
XmiI GTMKAC 1 cut(s) 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.