Rh5AG447900

Acyl-coenzyme A thioesterase 13-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000478
Physical Location & Seq
Reverse (-)
76970104 .. 76971276
1173 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG447900.1

Sequence Viewer

Length: 399 bp
ATGCAGATGGCCAAGGAGTACCTGGATCTGACCGACCACGACTCAGAGGCCGTGTCGCAACTCGACATTGCAGCTCACCGAGTCGGGGTCGAGTTCTACGAGGTCTTCGCTCTTCGAGGCATCCGAGTCGACCGAGTCGAACCCGGACTCGTCGTTTGTTCTTTCAAGGTCCCTCCCCGCCTCACCGACAGAGCTGGAAATTTTGCCACTGTAGACATGTCCATCTCGTATATGTCAAAGGCAAAGATCAATGATGAATTAGAGATCACCTCAAAGAGGCTAGGACAAAGAGGACGTCATTTTGGAACAATAGTGGTGCTGAAAAACAAAGCAACTGGGGAGATTATTGCTGAAGGTCGACATTCATTGTTTCGTTCAAATTTTGTTCCCAAACTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
4HBT

Protein Analysis

132

Amino Acids

14.82

Weight (kDa)

8.79

Isoelectric Point (pI)

30.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000478)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29590
fragaria_vesca FvH4_3g37930 FvH4_3g37930 FvH4_3g37970 FvH4_3g37990 FvH4_3g37990 FvH4_3g38000 FvH4_3g38010 FvH4_3g38050 FvH4_3g38060
malus_domestica MD03G1077300.v1.1 MD03G1077400.v1.1 MD03G1077500.v1.1 MD08G1031500.v1.1 MD11G1081500.v1.1 MD11G1081600.v1.1 MD11G1081700.v1.1 MD11G1081800.v1.1 MD11G1081900.v1.1
prunus_persica Prupe.6G061800_v2.0.a1 Prupe.6G061900_v2.0.a1 Prupe.6G062000_v2.0.a1 Prupe.6G062000_v2.0.a1 Prupe.6G062100_v2.0.a1 Prupe.6G062100_v2.0.a1 Prupe.6G062200_v2.0.a1 Prupe.6G062300_v2.0.a1
pyrus_communis pycom03g06110 pycom03g06120 pycom03g06130 pycom11g06960 pycom11g06970 pycom11g06980 pycom11g07020
rosa_chinensis RchiOBHm_Chr5g0068361 RchiOBHm_Chr5g0068381 RchiOBHm_Chr5g0068391 RchiOBHm_Chr5g0068401 RchiOBHm_Chr5g0068411 RchiOBHm_Chr5g0068441
rosa_laevigata RLG00000035969 RLG00000035971 RLG00000035972 RLG00000035973 RLG00000035974
rosa_multiflora Rmu_sc0001418.1_g000002 Rmu_sc0003450.1_g000002 Rmu_sc0003450.1_g000003 Rmu_sc0003450.1_g000004 Rmu_sc0003450.1_g000007 Rmu_sc0005087.1_g000001 Rmu_sc0006054.1_g000001
rosa_roxburghii Rroxscaffold_1G00012370 Rroxscaffold_1G00012380 Rroxscaffold_1G00012390 Rroxscaffold_1G00012400 Rroxscaffold_1G00012420 Rroxscaffold_1G00013110 Rroxscaffold_1G00013120 Rroxscaffold_1G00013130 Rroxscaffold_1G00013150 Rroxscaffold_1G00013160
rosa_rugosa Rorug05G0389200 Rorug05G0389400 Rorug05G0389500 Rorug05G0389600 Rorug05G0389600
rosa_samantha Rh5AG447900 Rh5AG448100 Rh5AG448200 Rh5AG448300 Rh5AG448400 Rh5BG465700 Rh5BG465900 Rh5BG466200 Rh5BG466300 Rh5BG466700 Rh5CG487500 Rh5CG487800 Rh5CG487900 Rh5CG488300 Rh5DG479500 Rh5DG479700 Rh5DG479800 Rh5DG480100
rosa_wichuraiana Rw5G041800 Rw5G041830 Rw5G041840 Rw5G041850 Rw5G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 298
AccI GTMKAC 3 cut(s) 129, 213, 358
AciI CCGC 1 cut(s) 178
AclWI GGATC 1 cut(s) 33
AcoI YGGCCR 1 cut(s) 9
AcsI RAATTY 2 cut(s) 199, 379
AcuI CTGAAG 1 cut(s) 372
AcyI GRCGYC 1 cut(s) 295
AfaI GTAC 1 cut(s) 20
AfiI CCNNNNNNNGG 2 cut(s) 85, 276
AflIII ACRYGT 1 cut(s) 216
AgsI TTSAA 2 cut(s) 166, 378
AjnI CCWGG 1 cut(s) 21
AluBI AGCT 2 cut(s) 74, 194
AluI AGCT 2 cut(s) 74, 194
AlwI GGATC 1 cut(s) 33
AoxI GGCC 2 cut(s) 9, 48
ApeKI GCWGC 1 cut(s) 71
ApoI RAATTY 2 cut(s) 199, 379
ArsI GACNNNNNNTTYG 4 cut(s) 138, 170, 280, 312
AspS9I GGNCC 1 cut(s) 169
AsuC2I CCSGG 1 cut(s) 144
AsuHPI GGTGA 3 cut(s) 68, 175, 259
AvaII GGWCC 1 cut(s) 169
BalI TGGCCA 1 cut(s) 11
BbsI GAAGAC 1 cut(s) 97
BbvI GCAGC 1 cut(s) 83
BccI CCATC 1 cut(s) 230
BceAI ACGGC 1 cut(s) 35
BcgI CGANNNNNNTGC 2 cut(s) 109, 143
BciT130I CCWGG 1 cut(s) 23
BcnI CCSGG 1 cut(s) 144
BfaI CTAG 1 cut(s) 281
BfmI CTRYAG 1 cut(s) 210
BisI GCNGC 1 cut(s) 72
BlsI GCNGC 1 cut(s) 73
Bme1390I CCNGG 2 cut(s) 23, 144
Bme18I GGWCC 1 cut(s) 169
BmgT120I GGNCC 1 cut(s) 169
BmiI GGNNCC 1 cut(s) 171
BmrFI CCNGG 2 cut(s) 23, 144
BmrI ACTGGG 1 cut(s) 345
BmsI GCATC 1 cut(s) 129
BmuI ACTGGG 1 cut(s) 345
BpiI GAAGAC 1 cut(s) 97
BplI GAGNNNNNCTC 2 cut(s) 254, 286
BpuMI CCSGG 1 cut(s) 144
BsaHI GRCGYC 1 cut(s) 295
BsaJI CCNNGG 1 cut(s) 12
Bsc4I CCNNNNNNNGG 2 cut(s) 85, 276
Bse1I ACTGG 1 cut(s) 340
Bse3DI GCAATG 1 cut(s) 66
BseBI CCWGG 1 cut(s) 23
BseDI CCNNGG 1 cut(s) 12
BseGI GGATG 1 cut(s) 120
BseLI CCNNNNNNNGG 2 cut(s) 85, 276
BseMI GCAATG 1 cut(s) 66
BseMII CTCAG 1 cut(s) 57
BseNI ACTGG 1 cut(s) 340
BseXI GCAGC 1 cut(s) 83
Bsh1285I CGRYCG 1 cut(s) 133
BshFI GGCC 2 cut(s) 11, 50
BsiEI CGRYCG 1 cut(s) 133
BsiSI CCGG 1 cut(s) 144
BslFI GGGAC 1 cut(s) 155
BslI CCNNNNNNNGG 2 cut(s) 85, 276
BsmFI GGGAC 1 cut(s) 155
BsnI GGCC 2 cut(s) 11, 50
Bsp143I GATC 3 cut(s) 25, 246, 264
BspACI CCGC 1 cut(s) 178
BspANI GGCC 2 cut(s) 11, 50
BspCNI CTCAG 1 cut(s) 56
BspLI GGNNCC 1 cut(s) 171
BspPI GGATC 1 cut(s) 33
BspQI GCTCTTC 1 cut(s) 117
BsrDI GCAATG 1 cut(s) 66
BsrI ACTGG 1 cut(s) 340
BssECI CCNNGG 1 cut(s) 12
BssMI GATC 3 cut(s) 25, 246, 264
BssNI GRCGYC 1 cut(s) 295
BssT1I CCWWGG 1 cut(s) 12
Bst2UI CCWGG 1 cut(s) 23
Bst4CI ACNGT 1 cut(s) 211
Bst6I CTCTTC 1 cut(s) 117
BstACI GRCGYC 1 cut(s) 295
BstDEI CTNAG 1 cut(s) 43
BstENI CCTNNNNNAGG 1 cut(s) 274
BstF5I GGATG 1 cut(s) 120
BstKTI GATC 3 cut(s) 28, 249, 267
BstMBI GATC 3 cut(s) 25, 246, 264
BstMCI CGRYCG 1 cut(s) 133
BstNI CCWGG 1 cut(s) 23
BstNSI RCATGY 1 cut(s) 220
BstSCI CCNGG 2 cut(s) 21, 142
BstSFI CTRYAG 1 cut(s) 210
BstV1I GCAGC 1 cut(s) 83
BstV2I GAAGAC 1 cut(s) 97
BstX2I RGATCY 1 cut(s) 25
BstYI RGATCY 1 cut(s) 25
BsuRI GGCC 2 cut(s) 11, 50
BtsCI GGATG 1 cut(s) 120
BtsIMutI CAGTG 1 cut(s) 207
Cfr13I GGNCC 1 cut(s) 169
Csp6I GTAC 1 cut(s) 19
CviAII CATG 1 cut(s) 217
CviJI RGCY 5 cut(s) 11, 50, 74, 194, 280
CviKI_1 RGCY 5 cut(s) 11, 50, 74, 194, 280
CviQI GTAC 1 cut(s) 19
DdeI CTNAG 1 cut(s) 43
DpnI GATC 3 cut(s) 27, 248, 266
DpnII GATC 3 cut(s) 25, 246, 264
EaeI YGGCCR 1 cut(s) 9
Eam1104I CTCTTC 1 cut(s) 117
EarI CTCTTC 1 cut(s) 117
Eco130I CCWWGG 1 cut(s) 12
Eco47I GGWCC 1 cut(s) 169
Eco57I CTGAAG 1 cut(s) 372
EcoNI CCTNNNNNAGG 1 cut(s) 274
EcoO109I RGGNCCY 1 cut(s) 169
EcoRII CCWGG 1 cut(s) 21
EcoT14I CCWWGG 1 cut(s) 12
ErhI CCWWGG 1 cut(s) 12
FaeI CATG 1 cut(s) 220
FaiI YATR 3 cut(s) 218, 231, 233
FaqI GGGAC 1 cut(s) 155
FatI CATG 1 cut(s) 216
FauI CCCGC 1 cut(s) 185
FblI GTMKAC 3 cut(s) 129, 213, 358
Fnu4HI GCNGC 1 cut(s) 72
FokI GGATG 1 cut(s) 107
Fsp4HI GCNGC 1 cut(s) 72
FspBI CTAG 1 cut(s) 281
GluI GCNGC 1 cut(s) 72
HaeIII GGCC 2 cut(s) 11, 50
HapII CCGG 1 cut(s) 144
Hin1I GRCGYC 1 cut(s) 295
Hin1II CATG 1 cut(s) 220
HincII GTYRAC 2 cut(s) 130, 359
HindII GTYRAC 2 cut(s) 130, 359
HinfI GANTC 5 cut(s) 41, 81, 126, 135, 147
HpaII CCGG 1 cut(s) 144
HphI GGTGA 3 cut(s) 68, 175, 259
Hpy166II GTNNAC 3 cut(s) 130, 214, 359
Hpy188I TCNGA 4 cut(s) 30, 46, 125, 398
Hpy8I GTNNAC 3 cut(s) 130, 214, 359
Hpy99I CGWCG 1 cut(s) 155
HpyAV CCTTC 1 cut(s) 347
HpyCH4III ACNGT 1 cut(s) 211
HpyCH4IV ACGT 1 cut(s) 295
HpyCH4V TGCA 2 cut(s) 4, 71
HpyF3I CTNAG 1 cut(s) 43
HpySE526I ACGT 1 cut(s) 295
Hsp92I GRCGYC 1 cut(s) 295
Hsp92II CATG 1 cut(s) 220
Kzo9I GATC 3 cut(s) 25, 246, 264
LguI GCTCTTC 1 cut(s) 117
LpnPI CCDG 5 cut(s) 8, 35, 157, 180, 321
Lsp1109I GCAGC 1 cut(s) 83
LweI GCATC 1 cut(s) 129
MaeI CTAG 1 cut(s) 281
MaeII ACGT 1 cut(s) 295
MalI GATC 3 cut(s) 27, 248, 266
MboI GATC 3 cut(s) 25, 246, 264
MboII GAAGA 2 cut(s) 97, 104
MflI RGATCY 1 cut(s) 25
MlsI TGGCCA 1 cut(s) 11
MluCI AATT 3 cut(s) 199, 257, 379
MluNI TGGCCA 1 cut(s) 11
MlyI GAGTC 5 cut(s) 35, 90, 135, 141, 144
MnlI CCTC 8 cut(s) 40, 94, 110, 183, 191, 270, 280, 284
Mox20I TGGCCA 1 cut(s) 11
MscI TGGCCA 1 cut(s) 11
Msp20I TGGCCA 1 cut(s) 11
MspI CCGG 1 cut(s) 144
MspR9I CCNGG 2 cut(s) 23, 144
MvaI CCWGG 1 cut(s) 23
NciI CCSGG 1 cut(s) 144
NdeII GATC 3 cut(s) 25, 246, 264
NlaIII CATG 1 cut(s) 220
NlaIV GGNNCC 1 cut(s) 171
NspI RCATGY 1 cut(s) 220
PciI ACATGT 1 cut(s) 216
PciSI GCTCTTC 1 cut(s) 117
PcsI WCGNNNNNNNCGW 3 cut(s) 96, 121, 135
PflFI GACNNNGTC 1 cut(s) 134
PkrI GCNGC 1 cut(s) 73
PleI GAGTC 5 cut(s) 35, 89, 134, 141, 143
PpsI GAGTC 5 cut(s) 35, 89, 134, 141, 143
PpuMI RGGWCCY 1 cut(s) 169
PscI ACATGT 1 cut(s) 216
Psp5II RGGWCCY 1 cut(s) 169
Psp6I CCWGG 1 cut(s) 21
PspGI CCWGG 1 cut(s) 21
PspN4I GGNNCC 1 cut(s) 171
PspPI GGNCC 1 cut(s) 169
PspPPI RGGWCCY 1 cut(s) 169
PsuI RGATCY 1 cut(s) 25
PsyI GACNNNGTC 1 cut(s) 134
RsaI GTAC 1 cut(s) 20
RsaNI GTAC 1 cut(s) 19
SalI GTCGAC 2 cut(s) 128, 357
SapI GCTCTTC 1 cut(s) 117
SatI GCNGC 1 cut(s) 72
Sau3AI GATC 3 cut(s) 25, 246, 264
Sau96I GGNCC 1 cut(s) 169
SchI GAGTC 5 cut(s) 35, 90, 135, 141, 144
ScrFI CCNGG 2 cut(s) 23, 144
SetI ASST 8 cut(s) 24, 76, 105, 171, 196, 272, 298, 358
SfaNI GCATC 1 cut(s) 129
SfcI CTRYAG 1 cut(s) 210
SinI GGWCC 1 cut(s) 169
Sse9I AATT 3 cut(s) 199, 257, 379
SsiI CCGC 1 cut(s) 178
SspMI CTAG 1 cut(s) 281
StyD4I CCNGG 2 cut(s) 21, 142
StyI CCWWGG 1 cut(s) 12
TaaI ACNGT 1 cut(s) 211
TaiI ACGT 1 cut(s) 298
TaqI TCGA 6 cut(s) 63, 90, 115, 129, 138, 358
TaqII GACCGA 2 cut(s) 47, 147
TasI AATT 3 cut(s) 199, 257, 379
TscAI CASTG 1 cut(s) 214
TseI GCWGC 1 cut(s) 71
TspDTI ATGAA 2 cut(s) 270, 354
TspRI CASTG 1 cut(s) 214
Tth111I GACNNNGTC 1 cut(s) 134
VpaK11BI GGWCC 1 cut(s) 169
XagI CCTNNNNNAGG 1 cut(s) 274
XapI RAATTY 2 cut(s) 199, 379
XceI RCATGY 1 cut(s) 220
XcmI CCANNNNNNNNNTGG 1 cut(s) 19
XmiI GTMKAC 3 cut(s) 129, 213, 358
XspI CTAG 1 cut(s) 281
ZraI GACGTC 1 cut(s) 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.