MD11G1081800.v1.1

Acyl-coenzyme A thioesterase 13-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0000478
Physical Location & Seq
Forward (+)
6976820 .. 6979097
2278 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1081800.v1.1.491

Sequence Viewer

Length: 477 bp
ATGGAGGGGGCGAAGAGGTTTCTGGGGCTGACTCCGGACGAGTCAGAGGCCGTGTCGCGACTCGCTGTTCCAGAACGGGCAGCCGGCGCGGGAAAGTGCTTCTACGACGCTTTCGCTGTTGCGGGAATCCGAGTCGACCGAGTCGAACCCGGACTCGTCGTCTGTTCTTTCAAGGTCCCTCCTCGCCTCACCGATAGAAGTGGAAAGTTGGCAAATGGTGCAATTGCAAACCTTGTCGATCTTGTTGGAATTTCTCTGGAATTTGGCGAGGGACTCGGTAGTGTTTCAACCAACATATCTATCTCGTATCTCTCTGCAGCGAAGATTGGTGACGAGCTAGAGATCACCTCAAAAAGATTAGGAAGAAGAGGAGGTTATACGGGAACAGTGATAGTTTTGAGAAACAAAGCAGCAGGGGAGATTATCGCCGAAGGTCGACATTCGTTGCTCCGTTCAAGTCGTGCTAGCAAACTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
4HBT

Protein Analysis

159

Amino Acids

16.6

Weight (kDa)

9.46

Isoelectric Point (pI)

33.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000478)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29590
fragaria_vesca FvH4_3g37930 FvH4_3g37930 FvH4_3g37970 FvH4_3g37990 FvH4_3g37990 FvH4_3g38000 FvH4_3g38010 FvH4_3g38050 FvH4_3g38060
malus_domestica MD03G1077300.v1.1 MD03G1077400.v1.1 MD03G1077500.v1.1 MD08G1031500.v1.1 MD11G1081500.v1.1 MD11G1081600.v1.1 MD11G1081700.v1.1 MD11G1081800.v1.1 MD11G1081900.v1.1
prunus_persica Prupe.6G061800_v2.0.a1 Prupe.6G061900_v2.0.a1 Prupe.6G062000_v2.0.a1 Prupe.6G062000_v2.0.a1 Prupe.6G062100_v2.0.a1 Prupe.6G062100_v2.0.a1 Prupe.6G062200_v2.0.a1 Prupe.6G062300_v2.0.a1
pyrus_communis pycom03g06110 pycom03g06120 pycom03g06130 pycom11g06960 pycom11g06970 pycom11g06980 pycom11g07020
rosa_chinensis RchiOBHm_Chr5g0068361 RchiOBHm_Chr5g0068381 RchiOBHm_Chr5g0068391 RchiOBHm_Chr5g0068401 RchiOBHm_Chr5g0068411 RchiOBHm_Chr5g0068441
rosa_laevigata RLG00000035969 RLG00000035971 RLG00000035972 RLG00000035973 RLG00000035974
rosa_multiflora Rmu_sc0001418.1_g000002 Rmu_sc0003450.1_g000002 Rmu_sc0003450.1_g000003 Rmu_sc0003450.1_g000004 Rmu_sc0003450.1_g000007 Rmu_sc0005087.1_g000001 Rmu_sc0006054.1_g000001
rosa_roxburghii Rroxscaffold_1G00012370 Rroxscaffold_1G00012380 Rroxscaffold_1G00012390 Rroxscaffold_1G00012400 Rroxscaffold_1G00012420 Rroxscaffold_1G00013110 Rroxscaffold_1G00013120 Rroxscaffold_1G00013130 Rroxscaffold_1G00013150 Rroxscaffold_1G00013160
rosa_rugosa Rorug05G0389200 Rorug05G0389400 Rorug05G0389500 Rorug05G0389600 Rorug05G0389600
rosa_samantha Rh5AG447900 Rh5AG448100 Rh5AG448200 Rh5AG448300 Rh5AG448400 Rh5BG465700 Rh5BG465900 Rh5BG466200 Rh5BG466300 Rh5BG466700 Rh5CG487500 Rh5CG487800 Rh5CG487900 Rh5CG488300 Rh5DG479500 Rh5DG479700 Rh5DG479800 Rh5DG480100
rosa_wichuraiana Rw5G041800 Rw5G041830 Rw5G041840 Rw5G041850 Rw5G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 135, 436
AccII CGCG 2 cut(s) 58, 89
AccIII TCCGGA 1 cut(s) 34
AciI CCGC 2 cut(s) 89, 122
AcsI RAATTY 2 cut(s) 249, 260
AgsI TTSAA 3 cut(s) 172, 288, 456
AhdI GACNNNNNGTC 1 cut(s) 158
AluBI AGCT 1 cut(s) 337
AluI AGCT 1 cut(s) 337
Aor13HI TCCGGA 1 cut(s) 34
AoxI GGCC 1 cut(s) 48
ApeKI GCWGC 3 cut(s) 80, 317, 410
ApoI RAATTY 2 cut(s) 249, 260
AspLEI GCGC 1 cut(s) 89
AspS9I GGNCC 1 cut(s) 175
AsuC2I CCSGG 1 cut(s) 150
AsuHPI GGTGA 3 cut(s) 181, 337, 341
AsuNHI GCTAGC 1 cut(s) 464
AvaII GGWCC 1 cut(s) 175
BbvI GCAGC 3 cut(s) 92, 329, 422
BceAI ACGGC 1 cut(s) 35
BcnI CCSGG 1 cut(s) 150
BfaI CTAG 2 cut(s) 338, 465
BfmI CTRYAG 1 cut(s) 315
BisI GCNGC 3 cut(s) 81, 318, 411
BlsI GCNGC 3 cut(s) 82, 319, 412
Bme1390I CCNGG 1 cut(s) 150
Bme18I GGWCC 1 cut(s) 175
BmeRI GACNNNNNGTC 1 cut(s) 158
BmgT120I GGNCC 1 cut(s) 175
BmiI GGNNCC 1 cut(s) 177
BmrFI CCNGG 1 cut(s) 150
BmtI GCTAGC 1 cut(s) 468
BplI GAGNNNNNCTC 2 cut(s) 332, 364
BpuMI CCSGG 1 cut(s) 150
BsaWI WCCGGW 1 cut(s) 34
Bse118I RCCGGY 1 cut(s) 83
BseAI TCCGGA 1 cut(s) 34
BseRI GAGGAG 2 cut(s) 171, 384
BseXI GCAGC 3 cut(s) 92, 329, 422
Bsh1236I CGCG 2 cut(s) 58, 89
Bsh1285I CGRYCG 1 cut(s) 139
BshFI GGCC 1 cut(s) 50
BsiEI CGRYCG 1 cut(s) 139
BsiSI CCGG 3 cut(s) 35, 84, 150
BslFI GGGAC 2 cut(s) 161, 285
BsmFI GGGAC 2 cut(s) 161, 285
BsnI GGCC 1 cut(s) 50
Bsp13I TCCGGA 1 cut(s) 34
Bsp143I GATC 2 cut(s) 238, 342
Bsp68I TCGCGA 1 cut(s) 58
BspACI CCGC 2 cut(s) 89, 122
BspANI GGCC 1 cut(s) 50
BspEI TCCGGA 1 cut(s) 34
BspFNI CGCG 2 cut(s) 58, 89
BspLI GGNNCC 1 cut(s) 177
BspMAI CTGCAG 1 cut(s) 319
BspOI GCTAGC 1 cut(s) 468
BsrFI RCCGGY 1 cut(s) 83
BssAI RCCGGY 1 cut(s) 83
BssMI GATC 2 cut(s) 238, 342
Bst4CI ACNGT 1 cut(s) 388
Bst6I CTCTTC 2 cut(s) 8, 361
BstAPI GCANNNNNTGC 1 cut(s) 218
BstC8I GCNNGC 2 cut(s) 85, 466
BstFNI CGCG 2 cut(s) 58, 89
BstHHI GCGC 1 cut(s) 89
BstKTI GATC 2 cut(s) 241, 345
BstMBI GATC 2 cut(s) 238, 342
BstMCI CGRYCG 1 cut(s) 139
BstMWI GCNNNNNNNGC 2 cut(s) 86, 218
BstSCI CCNGG 1 cut(s) 148
BstSFI CTRYAG 1 cut(s) 315
BstUI CGCG 2 cut(s) 58, 89
BstV1I GCAGC 3 cut(s) 92, 329, 422
BsuRI GGCC 1 cut(s) 50
BtsIMutI CAGTG 1 cut(s) 393
BtuMI TCGCGA 1 cut(s) 58
Cac8I GCNNGC 2 cut(s) 85, 466
CfoI GCGC 1 cut(s) 89
Cfr10I RCCGGY 1 cut(s) 83
Cfr13I GGNCC 1 cut(s) 175
CseI GACGC 1 cut(s) 116
CviJI RGCY 4 cut(s) 28, 50, 83, 337
CviKI_1 RGCY 4 cut(s) 28, 50, 83, 337
DpnI GATC 2 cut(s) 240, 344
DpnII GATC 2 cut(s) 238, 342
DriI GACNNNNNGTC 1 cut(s) 158
Eam1104I CTCTTC 2 cut(s) 8, 361
Eam1105I GACNNNNNGTC 1 cut(s) 158
EarI CTCTTC 2 cut(s) 8, 361
Eco47I GGWCC 1 cut(s) 175
EcoO109I RGGNCCY 1 cut(s) 175
FaiI YATR 2 cut(s) 296, 378
FaqI GGGAC 2 cut(s) 161, 285
FauI CCCGC 2 cut(s) 82, 115
FblI GTMKAC 2 cut(s) 135, 436
Fnu4HI GCNGC 3 cut(s) 81, 318, 411
Fsp4HI GCNGC 3 cut(s) 81, 318, 411
FspBI CTAG 2 cut(s) 338, 465
GlaI GCGC 1 cut(s) 88
GluI GCNGC 3 cut(s) 81, 318, 411
HaeIII GGCC 1 cut(s) 50
HapII CCGG 3 cut(s) 35, 84, 150
HgaI GACGC 1 cut(s) 116
HhaI GCGC 1 cut(s) 89
Hin6I GCGC 1 cut(s) 87
HinP1I GCGC 1 cut(s) 87
HincII GTYRAC 2 cut(s) 136, 437
HindII GTYRAC 2 cut(s) 136, 437
HinfI GANTC 8 cut(s) 31, 41, 60, 126, 132, 141, 153, 273
HpaII CCGG 3 cut(s) 35, 84, 150
HphI GGTGA 3 cut(s) 181, 337, 341
Hpy166II GTNNAC 2 cut(s) 136, 437
Hpy188I TCNGA 3 cut(s) 46, 131, 476
Hpy188III TCNNGA 4 cut(s) 35, 57, 71, 257
Hpy8I GTNNAC 2 cut(s) 136, 437
Hpy99I CGWCG 2 cut(s) 110, 161
HpyAV CCTTC 1 cut(s) 425
HpyCH4III ACNGT 1 cut(s) 388
HpyCH4V TGCA 3 cut(s) 221, 227, 317
HpyF10VI GCNNNNNNNGC 2 cut(s) 86, 218
HspAI GCGC 1 cut(s) 87
Kpn2I TCCGGA 1 cut(s) 34
KroI GCCGGC 1 cut(s) 83
KroNI GCCGGC 1 cut(s) 85
Kzo9I GATC 2 cut(s) 238, 342
LmnI GCTCC 1 cut(s) 453
LpnPI CCDG 7 cut(s) 8, 48, 84, 97, 163, 242, 399
Lsp1109I GCAGC 3 cut(s) 92, 329, 422
MaeI CTAG 2 cut(s) 338, 465
MaeIII GTNAC 1 cut(s) 329
MalI GATC 2 cut(s) 240, 344
MboI GATC 2 cut(s) 238, 342
MboII GAAGA 4 cut(s) 25, 334, 375, 378
MfeI CAATTG 1 cut(s) 222
MluCI AATT 3 cut(s) 222, 249, 260
MlyI GAGTC 7 cut(s) 25, 50, 54, 141, 147, 150, 267
MmeI TCCRAC 1 cut(s) 226
MnlI CCTC 9 cut(s) 9, 40, 189, 192, 197, 262, 358, 362, 365
MroI TCCGGA 1 cut(s) 34
MroNI GCCGGC 1 cut(s) 83
MspI CCGG 3 cut(s) 35, 84, 150
MspR9I CCNGG 1 cut(s) 150
MunI CAATTG 1 cut(s) 222
MvnI CGCG 2 cut(s) 58, 89
MwoI GCNNNNNNNGC 2 cut(s) 86, 218
NaeI GCCGGC 1 cut(s) 85
NciI CCSGG 1 cut(s) 150
NdeII GATC 2 cut(s) 238, 342
NgoMIV GCCGGC 1 cut(s) 83
NheI GCTAGC 1 cut(s) 464
NlaIV GGNNCC 1 cut(s) 177
NmuCI GTSAC 1 cut(s) 329
NruI TCGCGA 1 cut(s) 58
PcsI WCGNNNNNNNCGW 1 cut(s) 141
PdiI GCCGGC 1 cut(s) 85
PfeI GAWTC 1 cut(s) 126
PflFI GACNNNGTC 1 cut(s) 140
PkrI GCNGC 3 cut(s) 82, 319, 412
PleI GAGTC 7 cut(s) 25, 49, 54, 140, 147, 149, 267
PpsI GAGTC 7 cut(s) 25, 49, 54, 140, 147, 149, 267
PpuMI RGGWCCY 1 cut(s) 175
Psp5II RGGWCCY 1 cut(s) 175
PspN4I GGNNCC 1 cut(s) 177
PspPI GGNCC 1 cut(s) 175
PspPPI RGGWCCY 1 cut(s) 175
PstI CTGCAG 1 cut(s) 319
PsyI GACNNNGTC 1 cut(s) 140
RruI TCGCGA 1 cut(s) 58
SalI GTCGAC 2 cut(s) 134, 435
SatI GCNGC 3 cut(s) 81, 318, 411
Sau3AI GATC 2 cut(s) 238, 342
Sau96I GGNCC 1 cut(s) 175
SchI GAGTC 7 cut(s) 25, 50, 54, 141, 147, 150, 267
ScrFI CCNGG 1 cut(s) 150
SetI ASST 7 cut(s) 20, 177, 234, 339, 350, 376, 436
SfcI CTRYAG 1 cut(s) 315
SinI GGWCC 1 cut(s) 175
Sse9I AATT 3 cut(s) 222, 249, 260
SsiI CCGC 2 cut(s) 89, 122
SspMI CTAG 2 cut(s) 338, 465
StyD4I CCNGG 1 cut(s) 148
TaaI ACNGT 1 cut(s) 388
TaqI TCGA 4 cut(s) 135, 144, 237, 436
TaqII GACCGA 1 cut(s) 153
TasI AATT 3 cut(s) 222, 249, 260
TfiI GAWTC 1 cut(s) 126
TscAI CASTG 1 cut(s) 393
TseFI GTSAC 1 cut(s) 329
TseI GCWGC 3 cut(s) 80, 317, 410
Tsp45I GTSAC 1 cut(s) 329
TspGWI ACGGA 1 cut(s) 440
TspRI CASTG 1 cut(s) 393
Tth111I GACNNNGTC 1 cut(s) 140
VpaK11BI GGWCC 1 cut(s) 175
XapI RAATTY 2 cut(s) 249, 260
XmiI GTMKAC 2 cut(s) 135, 436
XspI CTAG 2 cut(s) 338, 465
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.