RLG00000035969

Acyl-coenzyme A thioesterase 13-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000478
Physical Location & Seq
Reverse (-)
74272787 .. 74276255
3469 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035969

Sequence Viewer

Length: 900 bp
ATGGAGAACGAGGCAAAGAAGTTTTTGGAGCTGAGCGATCGAGCAAGAGTCGGAGACTGTGTCGGGACTGGCCTTACCAGAATTCCGGCTCGAGGCATCCGAGTCGACCGAGTCGAACCAGGGCTGGTTGTGTGTACTTTCAAGGTCCTTCTACGACTCCTTGATGGAGATGGAAATTTTGCAAGTGGTGCAATTGCAAACCTGGTTGATGTAGTTGGTAGTTGCGTGGTTTATGTATCCGGTGCACCTATGAATGTCACGATGGAGATGTCCATATCGTATTTGTCTACGGCAAAGCTTGATGATGAGCTAGAGATAACTTCAAGGTTGTCAGGACAGAAAGGAGGTTACTCTGGAATAATAGTTCTTCTAAGAAACAAGCATGCCCTTGGAGTGAGTGAGTCGATCAGGGACGGATCCCACAATATGCAGATGGCCAAGGAGTACCTGGATCTGAACGACCACGACTCAAAGGCCGTATCGCAACTCGACATTGCAGCTCAACGAGTCGGGGTCGAGTTCTACGAGGTCTTCGCTCTTCGAGGCATCCGAGTCGACCGAGTCGAACCCGGACTCGTCGTTTGTTCTTTCAAGGTCCCTCCCCGCCTCACCGACAGAGCTGGAAATTTTGCCACTGGTGCAATTGCAAACCTTGTTGATGTAGTTGGTAATTCTACAGTTTATCATCTCGATCGCCCTATGAATGTTTCAATAGACATGTCCATCTCGTATATGTCAAAGGCAAAGATCGATGATGAATTAGAGATCACCTCAAAGAGGCTAGGACAAAGAGGACGTTATTTTGGAACAATAGTGGTGCTGAAAAACAAAGCAACTGGGGAGATTATTGCTGAAGGTCGACATTCATTGTTTAGTTCAAATTTTGTTCCCAAACTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
4HBT

Protein Analysis

300

Amino Acids

32.56

Weight (kDa)

6.97

Isoelectric Point (pI)

20.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000478)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29590
fragaria_vesca FvH4_3g37930 FvH4_3g37930 FvH4_3g37970 FvH4_3g37990 FvH4_3g37990 FvH4_3g38000 FvH4_3g38010 FvH4_3g38050 FvH4_3g38060
malus_domestica MD03G1077300.v1.1 MD03G1077400.v1.1 MD03G1077500.v1.1 MD08G1031500.v1.1 MD11G1081500.v1.1 MD11G1081600.v1.1 MD11G1081700.v1.1 MD11G1081800.v1.1 MD11G1081900.v1.1
prunus_persica Prupe.6G061800_v2.0.a1 Prupe.6G061900_v2.0.a1 Prupe.6G062000_v2.0.a1 Prupe.6G062000_v2.0.a1 Prupe.6G062100_v2.0.a1 Prupe.6G062100_v2.0.a1 Prupe.6G062200_v2.0.a1 Prupe.6G062300_v2.0.a1
pyrus_communis pycom03g06110 pycom03g06120 pycom03g06130 pycom11g06960 pycom11g06970 pycom11g06980 pycom11g07020
rosa_chinensis RchiOBHm_Chr5g0068361 RchiOBHm_Chr5g0068381 RchiOBHm_Chr5g0068391 RchiOBHm_Chr5g0068401 RchiOBHm_Chr5g0068411 RchiOBHm_Chr5g0068441
rosa_laevigata RLG00000035969 RLG00000035971 RLG00000035972 RLG00000035973 RLG00000035974
rosa_multiflora Rmu_sc0001418.1_g000002 Rmu_sc0003450.1_g000002 Rmu_sc0003450.1_g000003 Rmu_sc0003450.1_g000004 Rmu_sc0003450.1_g000007 Rmu_sc0005087.1_g000001 Rmu_sc0006054.1_g000001
rosa_roxburghii Rroxscaffold_1G00012370 Rroxscaffold_1G00012380 Rroxscaffold_1G00012390 Rroxscaffold_1G00012400 Rroxscaffold_1G00012420 Rroxscaffold_1G00013110 Rroxscaffold_1G00013120 Rroxscaffold_1G00013130 Rroxscaffold_1G00013150 Rroxscaffold_1G00013160
rosa_rugosa Rorug05G0389200 Rorug05G0389400 Rorug05G0389500 Rorug05G0389600 Rorug05G0389600
rosa_samantha Rh5AG447900 Rh5AG448100 Rh5AG448200 Rh5AG448300 Rh5AG448400 Rh5BG465700 Rh5BG465900 Rh5BG466200 Rh5BG466300 Rh5BG466700 Rh5CG487500 Rh5CG487800 Rh5CG487900 Rh5CG488300 Rh5DG479500 Rh5DG479700 Rh5DG479800 Rh5DG480100
rosa_wichuraiana Rw5G041800 Rw5G041830 Rw5G041840 Rw5G041850 Rw5G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 4 cut(s) 105, 287, 555, 859
AciI CCGC 1 cut(s) 604
AclWI GGATC 3 cut(s) 411, 424, 459
AcoI YGGCCR 1 cut(s) 435
AcsI RAATTY 4 cut(s) 81, 175, 625, 880
AcuI CTGAAG 1 cut(s) 873
AfaI GTAC 2 cut(s) 136, 446
AfiI CCNNNNNNNGG 2 cut(s) 92, 777
AflIII ACRYGT 1 cut(s) 717
AgsI TTSAA 5 cut(s) 142, 324, 592, 711, 879
AjnI CCWGG 3 cut(s) 118, 201, 447
AloI GAACNNNNNNTCC 2 cut(s) 348, 380
AluBI AGCT 5 cut(s) 31, 298, 310, 500, 620
AluI AGCT 5 cut(s) 31, 298, 310, 500, 620
Alw21I GWGCWC 1 cut(s) 247
Alw26I GTCTC 1 cut(s) 48
Alw44I GTGCAC 1 cut(s) 243
AlwI GGATC 3 cut(s) 411, 424, 459
Ama87I CYCGRG 1 cut(s) 90
AoxI GGCC 3 cut(s) 70, 435, 474
ApaLI GTGCAC 1 cut(s) 243
ApeKI GCWGC 1 cut(s) 497
ApoI RAATTY 4 cut(s) 81, 175, 625, 880
ArsI GACNNNNNNTTYG 2 cut(s) 564, 596
AspS9I GGNCC 2 cut(s) 145, 595
AsuC2I CCSGG 1 cut(s) 570
AsuHPI GGTGA 2 cut(s) 601, 760
AvaI CYCGRG 1 cut(s) 90
AvaII GGWCC 2 cut(s) 145, 595
BaeGI GKGCMC 1 cut(s) 247
BalI TGGCCA 1 cut(s) 437
BamHI GGATCC 1 cut(s) 416
BbsI GAAGAC 1 cut(s) 523
Bbv12I GWGCWC 1 cut(s) 247
BbvI GCAGC 1 cut(s) 509
BccI CCATC 5 cut(s) 158, 164, 256, 427, 731
BceAI ACGGC 2 cut(s) 306, 461
BcgI CGANNNNNNTGC 4 cut(s) 85, 119, 535, 569
BciT130I CCWGG 3 cut(s) 120, 203, 449
BciVI GTATCC 1 cut(s) 247
BcnI CCSGG 1 cut(s) 570
BcoDI GTCTC 1 cut(s) 48
BfaI CTAG 2 cut(s) 311, 782
BfmI CTRYAG 1 cut(s) 675
BfuI GTATCC 1 cut(s) 247
BisI GCNGC 1 cut(s) 498
BlpI GCTNAGC 1 cut(s) 32
BlsI GCNGC 1 cut(s) 499
Bme1390I CCNGG 4 cut(s) 120, 203, 449, 570
Bme18I GGWCC 2 cut(s) 145, 595
BmeT110I CYCGRG 1 cut(s) 90
BmgT120I GGNCC 2 cut(s) 145, 595
BmiI GGNNCC 2 cut(s) 418, 597
BmrFI CCNGG 4 cut(s) 120, 203, 449, 570
BmrI ACTGGG 1 cut(s) 846
BmsI GCATC 2 cut(s) 105, 555
BmuI ACTGGG 1 cut(s) 846
BpiI GAAGAC 1 cut(s) 523
BplI GAGNNNNNCTC 2 cut(s) 755, 787
Bpu1102I GCTNAGC 1 cut(s) 32
BpuMI CCSGG 1 cut(s) 570
Bsa29I ATCGAT 1 cut(s) 750
BsaJI CCNNGG 3 cut(s) 119, 388, 438
BsaWI WCCGGW 1 cut(s) 239
BsaXI ACNNNNNCTCC 2 cut(s) 45, 75
Bsc4I CCNNNNNNNGG 2 cut(s) 92, 777
Bse1I ACTGG 3 cut(s) 73, 640, 841
Bse3DI GCAATG 1 cut(s) 492
BseBI CCWGG 3 cut(s) 120, 203, 449
BseCI ATCGAT 1 cut(s) 750
BseDI CCNNGG 3 cut(s) 119, 388, 438
BseGI GGATG 2 cut(s) 96, 546
BseLI CCNNNNNNNGG 2 cut(s) 92, 777
BseMI GCAATG 1 cut(s) 492
BseMII CTCAG 1 cut(s) 23
BseNI ACTGG 3 cut(s) 73, 640, 841
BseSI GKGCMC 1 cut(s) 247
BseXI GCAGC 1 cut(s) 509
Bsh1285I CGRYCG 4 cut(s) 40, 109, 559, 694
BshFI GGCC 3 cut(s) 72, 437, 476
BshVI ATCGAT 1 cut(s) 750
BsiEI CGRYCG 4 cut(s) 40, 109, 559, 694
BsiHKAI GWGCWC 1 cut(s) 247
BsiHKCI CYCGRG 1 cut(s) 90
BsiSI CCGG 3 cut(s) 86, 240, 570
BslFI GGGAC 3 cut(s) 79, 425, 581
BslI CCNNNNNNNGG 2 cut(s) 92, 777
BsmAI GTCTC 1 cut(s) 48
BsmFI GGGAC 3 cut(s) 79, 425, 581
BsnI GGCC 3 cut(s) 72, 437, 476
BsoBI CYCGRG 1 cut(s) 90
Bsp1286I GDGCHC 1 cut(s) 247
Bsp143I GATC 7 cut(s) 37, 405, 416, 451, 691, 747, 765
Bsp1720I GCTNAGC 1 cut(s) 32
BspACI CCGC 1 cut(s) 604
BspANI GGCC 3 cut(s) 72, 437, 476
BspCNI CTCAG 1 cut(s) 24
BspDI ATCGAT 1 cut(s) 750
BspLI GGNNCC 2 cut(s) 418, 597
BspPI GGATC 3 cut(s) 411, 424, 459
BspQI GCTCTTC 1 cut(s) 543
BsrDI GCAATG 1 cut(s) 492
BsrI ACTGG 3 cut(s) 73, 640, 841
BssECI CCNNGG 3 cut(s) 119, 388, 438
BssMI GATC 7 cut(s) 37, 405, 416, 451, 691, 747, 765
BssT1I CCWWGG 2 cut(s) 388, 438
Bst2UI CCWGG 3 cut(s) 120, 203, 449
Bst4CI ACNGT 2 cut(s) 59, 679
Bst6I CTCTTC 1 cut(s) 543
BstAPI GCANNNNNTGC 1 cut(s) 188
BstC8I GCNNGC 1 cut(s) 384
BstDEI CTNAG 2 cut(s) 32, 371
BstENI CCTNNNNNAGG 1 cut(s) 775
BstF5I GGATG 2 cut(s) 96, 546
BstKTI GATC 7 cut(s) 40, 408, 419, 454, 694, 750, 768
BstMAI GTCTC 1 cut(s) 48
BstMBI GATC 7 cut(s) 37, 405, 416, 451, 691, 747, 765
BstMCI CGRYCG 4 cut(s) 40, 109, 559, 694
BstMWI GCNNNNNNNGC 2 cut(s) 188, 638
BstNI CCWGG 3 cut(s) 120, 203, 449
BstNSI RCATGY 2 cut(s) 386, 721
BstSCI CCNGG 4 cut(s) 118, 201, 447, 568
BstSFI CTRYAG 1 cut(s) 675
BstSLI GKGCMC 1 cut(s) 247
BstV1I GCAGC 1 cut(s) 509
BstV2I GAAGAC 1 cut(s) 523
BstX2I RGATCY 2 cut(s) 416, 451
BstYI RGATCY 2 cut(s) 416, 451
Bsu15I ATCGAT 1 cut(s) 750
BsuI GTATCC 1 cut(s) 247
BsuRI GGCC 3 cut(s) 72, 437, 476
BsuTUI ATCGAT 1 cut(s) 750
BtsCI GGATG 2 cut(s) 96, 546
BtsIMutI CAGTG 1 cut(s) 633
Cac8I GCNNGC 1 cut(s) 384
Cfr13I GGNCC 2 cut(s) 145, 595
ClaI ATCGAT 1 cut(s) 750
CsiI ACCWGGT 1 cut(s) 201
Csp6I GTAC 2 cut(s) 135, 445
CviAII CATG 2 cut(s) 383, 718
CviQI GTAC 2 cut(s) 135, 445
DdeI CTNAG 2 cut(s) 32, 371
DpnI GATC 7 cut(s) 39, 407, 418, 453, 693, 749, 767
DpnII GATC 7 cut(s) 37, 405, 416, 451, 691, 747, 765
EaeI YGGCCR 1 cut(s) 435
Eam1104I CTCTTC 1 cut(s) 543
EarI CTCTTC 1 cut(s) 543
Eco130I CCWWGG 2 cut(s) 388, 438
Eco47I GGWCC 2 cut(s) 145, 595
Eco57I CTGAAG 1 cut(s) 873
Eco88I CYCGRG 1 cut(s) 90
EcoNI CCTNNNNNAGG 1 cut(s) 775
EcoO109I RGGNCCY 2 cut(s) 145, 595
EcoRI GAATTC 1 cut(s) 81
EcoRII CCWGG 3 cut(s) 118, 201, 447
EcoT14I CCWWGG 2 cut(s) 388, 438
ErhI CCWWGG 2 cut(s) 388, 438
FaeI CATG 2 cut(s) 386, 721
FaiI YATR 9 cut(s) 234, 251, 275, 384, 428, 701, 719, 732, 734
FaqI GGGAC 3 cut(s) 79, 425, 581
FatI CATG 2 cut(s) 382, 717
FauI CCCGC 1 cut(s) 611
FblI GTMKAC 4 cut(s) 105, 287, 555, 859
Fnu4HI GCNGC 1 cut(s) 498
FokI GGATG 2 cut(s) 83, 533
Fsp4HI GCNGC 1 cut(s) 498
FspBI CTAG 2 cut(s) 311, 782
GluI GCNGC 1 cut(s) 498
HaeIII GGCC 3 cut(s) 72, 437, 476
HapII CCGG 3 cut(s) 86, 240, 570
Hin1II CATG 2 cut(s) 386, 721
HincII GTYRAC 3 cut(s) 106, 556, 860
HindII GTYRAC 3 cut(s) 106, 556, 860
HindIII AAGCTT 1 cut(s) 296
HpaII CCGG 3 cut(s) 86, 240, 570
HphI GGTGA 2 cut(s) 601, 760
Hpy166II GTNNAC 6 cut(s) 106, 135, 245, 288, 556, 860
Hpy188I TCNGA 5 cut(s) 53, 101, 456, 551, 899
Hpy188III TCNNGA 5 cut(s) 64, 259, 333, 354, 689
Hpy8I GTNNAC 6 cut(s) 106, 135, 245, 288, 556, 860
Hpy99I CGWCG 1 cut(s) 581
HpyAV CCTTC 2 cut(s) 158, 848
HpyCH4III ACNGT 2 cut(s) 59, 679
HpyCH4IV ACGT 1 cut(s) 796
HpyCH4V TGCA 8 cut(s) 182, 191, 197, 245, 430, 497, 641, 647
HpyF10VI GCNNNNNNNGC 2 cut(s) 188, 638
HpyF3I CTNAG 2 cut(s) 32, 371
HpySE526I ACGT 1 cut(s) 796
Hsp92II CATG 2 cut(s) 386, 721
Kzo9I GATC 7 cut(s) 37, 405, 416, 451, 691, 747, 765
LguI GCTCTTC 1 cut(s) 543
LmnI GCTCC 1 cut(s) 28
Lsp1109I GCAGC 1 cut(s) 509
LweI GCATC 2 cut(s) 105, 555
MabI ACCWGGT 1 cut(s) 201
MaeI CTAG 2 cut(s) 311, 782
MaeII ACGT 1 cut(s) 796
MaeIII GTNAC 2 cut(s) 256, 347
MalI GATC 7 cut(s) 39, 407, 418, 453, 693, 749, 767
MboI GATC 7 cut(s) 37, 405, 416, 451, 691, 747, 765
MboII GAAGA 3 cut(s) 359, 523, 530
MfeI CAATTG 2 cut(s) 192, 642
MflI RGATCY 2 cut(s) 416, 451
MhlI GDGCHC 1 cut(s) 247
MlsI TGGCCA 1 cut(s) 437
MluCI AATT 8 cut(s) 81, 175, 192, 625, 642, 670, 758, 880
MluNI TGGCCA 1 cut(s) 437
MmeI TCCRAC 1 cut(s) 31
Mox20I TGGCCA 1 cut(s) 437
MscI TGGCCA 1 cut(s) 437
Msp20I TGGCCA 1 cut(s) 437
MspI CCGG 3 cut(s) 86, 240, 570
MspR9I CCNGG 4 cut(s) 120, 203, 449, 570
MunI CAATTG 2 cut(s) 192, 642
MvaI CCWGG 3 cut(s) 120, 203, 449
MwoI GCNNNNNNNGC 2 cut(s) 188, 638
NciI CCSGG 1 cut(s) 570
NdeII GATC 7 cut(s) 37, 405, 416, 451, 691, 747, 765
NlaIII CATG 2 cut(s) 386, 721
NlaIV GGNNCC 2 cut(s) 418, 597
NmuCI GTSAC 1 cut(s) 256
NspI RCATGY 2 cut(s) 386, 721
PaeI GCATGC 1 cut(s) 386
PaeR7I CTCGAG 1 cut(s) 90
PciI ACATGT 1 cut(s) 717
PciSI GCTCTTC 1 cut(s) 543
PcsI WCGNNNNNNNCGW 5 cut(s) 97, 111, 522, 547, 561
PflFI GACNNNGTC 3 cut(s) 59, 110, 560
PkrI GCNGC 1 cut(s) 499
Ple19I CGATCG 2 cut(s) 40, 694
PpuMI RGGWCCY 2 cut(s) 145, 595
PscI ACATGT 1 cut(s) 717
Psp5II RGGWCCY 2 cut(s) 145, 595
Psp6I CCWGG 3 cut(s) 118, 201, 447
PspGI CCWGG 3 cut(s) 118, 201, 447
PspN4I GGNNCC 2 cut(s) 418, 597
PspPI GGNCC 2 cut(s) 145, 595
PspPPI RGGWCCY 2 cut(s) 145, 595
PspXI VCTCGAGB 1 cut(s) 90
PsuI RGATCY 2 cut(s) 416, 451
PsyI GACNNNGTC 3 cut(s) 59, 110, 560
PvuI CGATCG 2 cut(s) 40, 694
RsaI GTAC 2 cut(s) 136, 446
RsaNI GTAC 2 cut(s) 135, 445
SalI GTCGAC 3 cut(s) 104, 554, 858
SapI GCTCTTC 1 cut(s) 543
SatI GCNGC 1 cut(s) 498
Sau3AI GATC 7 cut(s) 37, 405, 416, 451, 691, 747, 765
Sau96I GGNCC 2 cut(s) 145, 595
ScrFI CCNGG 4 cut(s) 120, 203, 449, 570
SduI GDGCHC 1 cut(s) 247
SexAI ACCWGGT 1 cut(s) 201
SfaNI GCATC 2 cut(s) 105, 555
SfcI CTRYAG 1 cut(s) 675
Sfr274I CTCGAG 1 cut(s) 90
SinI GGWCC 2 cut(s) 145, 595
SlaI CTCGAG 1 cut(s) 90
SmlI CTYRAG 1 cut(s) 90
SmoI CTYRAG 1 cut(s) 90
SphI GCATGC 1 cut(s) 386
Sse9I AATT 8 cut(s) 81, 175, 192, 625, 642, 670, 758, 880
SsiI CCGC 1 cut(s) 604
SspMI CTAG 2 cut(s) 311, 782
StyD4I CCNGG 4 cut(s) 118, 201, 447, 568
StyI CCWWGG 2 cut(s) 388, 438
TaaI ACNGT 2 cut(s) 59, 679
TaiI ACGT 1 cut(s) 799
TaqII GACCGA 2 cut(s) 123, 573
TasI AATT 8 cut(s) 81, 175, 192, 625, 642, 670, 758, 880
TatI WGTACW 1 cut(s) 134
TscAI CASTG 1 cut(s) 640
TseFI GTSAC 1 cut(s) 256
TseI GCWGC 1 cut(s) 497
Tsp45I GTSAC 1 cut(s) 256
TspDTI ATGAA 4 cut(s) 266, 716, 771, 855
TspGWI ACGGA 1 cut(s) 429
TspRI CASTG 1 cut(s) 640
Tth111I GACNNNGTC 3 cut(s) 59, 110, 560
VneI GTGCAC 1 cut(s) 243
VpaK11BI GGWCC 2 cut(s) 145, 595
XagI CCTNNNNNAGG 1 cut(s) 775
XapI RAATTY 4 cut(s) 81, 175, 625, 880
XceI RCATGY 2 cut(s) 386, 721
XcmI CCANNNNNNNNNTGG 1 cut(s) 445
XhoI CTCGAG 1 cut(s) 90
XmiI GTMKAC 4 cut(s) 105, 287, 555, 859
XspI CTAG 2 cut(s) 311, 782
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.