Rh5CG487500

Acyl-coenzyme A thioesterase 13-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000478
Physical Location & Seq
Reverse (-)
67958140 .. 67959720
1581 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG487500.1

Sequence Viewer

Length: 474 bp
ATGCAGATGGCCAAGGAGTACCTGGATCTGACCGACCACGACTCAGAGGCCGTATCGCAACTCGACATTGCAGCTCAACGAGCCGGGGTCGAGTTCTACGAGGTCTTCGCTCTTCGAGGCATCCGAGTCGACCGAGTCGAACCCGGACTCGTCGTTTGTTCTTTCAAGGTCCCTCCCCGCCTCACCGACAGAGCTGGAAATTTTGCCACTGGTGCAATTGCAAACCTTGTTGATGTAGTTGGTAATTCTACAGTTTATTGTCTCGGTCGCCCTATGAATGTTTCAATAGACATGTCCATCTCGTATATGTCAAAGGCAAAGATCGATGATGAATTAGAGATCACCTCAAAGAGGCTAGGACAAAGAGGACGTCATTTTGGAACAATAGTGGTGCTGAAAAACAAAGCAACTGGGGAGATTATTGCTGAAGGTCGACATTCATTGTTTCGTTCAAATTTTGTTCCCAAACTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
4HBT

Protein Analysis

157

Amino Acids

17.33

Weight (kDa)

7.79

Isoelectric Point (pI)

27.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000478)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29590
fragaria_vesca FvH4_3g37930 FvH4_3g37930 FvH4_3g37970 FvH4_3g37990 FvH4_3g37990 FvH4_3g38000 FvH4_3g38010 FvH4_3g38050 FvH4_3g38060
malus_domestica MD03G1077300.v1.1 MD03G1077400.v1.1 MD03G1077500.v1.1 MD08G1031500.v1.1 MD11G1081500.v1.1 MD11G1081600.v1.1 MD11G1081700.v1.1 MD11G1081800.v1.1 MD11G1081900.v1.1
prunus_persica Prupe.6G061800_v2.0.a1 Prupe.6G061900_v2.0.a1 Prupe.6G062000_v2.0.a1 Prupe.6G062000_v2.0.a1 Prupe.6G062100_v2.0.a1 Prupe.6G062100_v2.0.a1 Prupe.6G062200_v2.0.a1 Prupe.6G062300_v2.0.a1
pyrus_communis pycom03g06110 pycom03g06120 pycom03g06130 pycom11g06960 pycom11g06970 pycom11g06980 pycom11g07020
rosa_chinensis RchiOBHm_Chr5g0068361 RchiOBHm_Chr5g0068381 RchiOBHm_Chr5g0068391 RchiOBHm_Chr5g0068401 RchiOBHm_Chr5g0068411 RchiOBHm_Chr5g0068441
rosa_laevigata RLG00000035969 RLG00000035971 RLG00000035972 RLG00000035973 RLG00000035974
rosa_multiflora Rmu_sc0001418.1_g000002 Rmu_sc0003450.1_g000002 Rmu_sc0003450.1_g000003 Rmu_sc0003450.1_g000004 Rmu_sc0003450.1_g000007 Rmu_sc0005087.1_g000001 Rmu_sc0006054.1_g000001
rosa_roxburghii Rroxscaffold_1G00012370 Rroxscaffold_1G00012380 Rroxscaffold_1G00012390 Rroxscaffold_1G00012400 Rroxscaffold_1G00012420 Rroxscaffold_1G00013110 Rroxscaffold_1G00013120 Rroxscaffold_1G00013130 Rroxscaffold_1G00013150 Rroxscaffold_1G00013160
rosa_rugosa Rorug05G0389200 Rorug05G0389400 Rorug05G0389500 Rorug05G0389600 Rorug05G0389600
rosa_samantha Rh5AG447900 Rh5AG448100 Rh5AG448200 Rh5AG448300 Rh5AG448400 Rh5BG465700 Rh5BG465900 Rh5BG466200 Rh5BG466300 Rh5BG466700 Rh5CG487500 Rh5CG487800 Rh5CG487900 Rh5CG488300 Rh5DG479500 Rh5DG479700 Rh5DG479800 Rh5DG480100
rosa_wichuraiana Rw5G041800 Rw5G041830 Rw5G041840 Rw5G041850 Rw5G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 373
AccI GTMKAC 2 cut(s) 129, 433
AciI CCGC 1 cut(s) 178
AclWI GGATC 1 cut(s) 33
AcoI YGGCCR 1 cut(s) 9
AcsI RAATTY 2 cut(s) 199, 454
AcuI CTGAAG 1 cut(s) 447
AcyI GRCGYC 1 cut(s) 370
AfaI GTAC 1 cut(s) 20
AfiI CCNNNNNNNGG 1 cut(s) 351
AflIII ACRYGT 1 cut(s) 291
AgsI TTSAA 3 cut(s) 166, 285, 453
AjnI CCWGG 1 cut(s) 21
AluBI AGCT 2 cut(s) 74, 194
AluI AGCT 2 cut(s) 74, 194
Alw26I GTCTC 1 cut(s) 266
AlwI GGATC 1 cut(s) 33
AoxI GGCC 2 cut(s) 9, 48
ApeKI GCWGC 1 cut(s) 71
ApoI RAATTY 2 cut(s) 199, 454
ArsI GACNNNNNNTTYG 4 cut(s) 138, 170, 355, 387
AspS9I GGNCC 1 cut(s) 169
AsuC2I CCSGG 2 cut(s) 85, 144
AsuHPI GGTGA 2 cut(s) 175, 334
AvaII GGWCC 1 cut(s) 169
BalI TGGCCA 1 cut(s) 11
BbsI GAAGAC 1 cut(s) 97
BbvI GCAGC 1 cut(s) 83
BccI CCATC 1 cut(s) 305
BceAI ACGGC 1 cut(s) 35
BcgI CGANNNNNNTGC 2 cut(s) 109, 143
BciT130I CCWGG 1 cut(s) 23
BcnI CCSGG 2 cut(s) 85, 144
BcoDI GTCTC 1 cut(s) 266
BfaI CTAG 1 cut(s) 356
BfmI CTRYAG 1 cut(s) 249
BisI GCNGC 1 cut(s) 72
BlsI GCNGC 1 cut(s) 73
Bme1390I CCNGG 3 cut(s) 23, 85, 144
Bme18I GGWCC 1 cut(s) 169
BmgT120I GGNCC 1 cut(s) 169
BmiI GGNNCC 1 cut(s) 171
BmrFI CCNGG 3 cut(s) 23, 85, 144
BmrI ACTGGG 1 cut(s) 420
BmsI GCATC 1 cut(s) 129
BmuI ACTGGG 1 cut(s) 420
BpiI GAAGAC 1 cut(s) 97
BplI GAGNNNNNCTC 2 cut(s) 329, 361
BpuMI CCSGG 2 cut(s) 85, 144
Bsa29I ATCGAT 1 cut(s) 324
BsaHI GRCGYC 1 cut(s) 370
BsaJI CCNNGG 2 cut(s) 12, 84
Bsc4I CCNNNNNNNGG 1 cut(s) 351
Bse1I ACTGG 2 cut(s) 214, 415
Bse3DI GCAATG 1 cut(s) 66
BseBI CCWGG 1 cut(s) 23
BseCI ATCGAT 1 cut(s) 324
BseDI CCNNGG 2 cut(s) 12, 84
BseGI GGATG 1 cut(s) 120
BseLI CCNNNNNNNGG 1 cut(s) 351
BseMI GCAATG 1 cut(s) 66
BseMII CTCAG 1 cut(s) 57
BseNI ACTGG 2 cut(s) 214, 415
BseXI GCAGC 1 cut(s) 83
Bsh1285I CGRYCG 2 cut(s) 133, 268
BshFI GGCC 2 cut(s) 11, 50
BshVI ATCGAT 1 cut(s) 324
BsiEI CGRYCG 2 cut(s) 133, 268
BsiSI CCGG 2 cut(s) 84, 144
BslFI GGGAC 1 cut(s) 155
BslI CCNNNNNNNGG 1 cut(s) 351
BsmAI GTCTC 1 cut(s) 266
BsmFI GGGAC 1 cut(s) 155
BsnI GGCC 2 cut(s) 11, 50
Bsp143I GATC 3 cut(s) 25, 321, 339
BspACI CCGC 1 cut(s) 178
BspANI GGCC 2 cut(s) 11, 50
BspCNI CTCAG 1 cut(s) 56
BspDI ATCGAT 1 cut(s) 324
BspLI GGNNCC 1 cut(s) 171
BspPI GGATC 1 cut(s) 33
BspQI GCTCTTC 1 cut(s) 117
BsrDI GCAATG 1 cut(s) 66
BsrI ACTGG 2 cut(s) 214, 415
BssECI CCNNGG 2 cut(s) 12, 84
BssMI GATC 3 cut(s) 25, 321, 339
BssNI GRCGYC 1 cut(s) 370
BssT1I CCWWGG 1 cut(s) 12
Bst2UI CCWGG 1 cut(s) 23
Bst4CI ACNGT 1 cut(s) 253
Bst6I CTCTTC 1 cut(s) 117
BstACI GRCGYC 1 cut(s) 370
BstDEI CTNAG 1 cut(s) 43
BstENI CCTNNNNNAGG 1 cut(s) 349
BstF5I GGATG 1 cut(s) 120
BstKTI GATC 3 cut(s) 28, 324, 342
BstMAI GTCTC 1 cut(s) 266
BstMBI GATC 3 cut(s) 25, 321, 339
BstMCI CGRYCG 2 cut(s) 133, 268
BstMWI GCNNNNNNNGC 2 cut(s) 80, 212
BstNI CCWGG 1 cut(s) 23
BstNSI RCATGY 1 cut(s) 295
BstSCI CCNGG 3 cut(s) 21, 83, 142
BstSFI CTRYAG 1 cut(s) 249
BstV1I GCAGC 1 cut(s) 83
BstV2I GAAGAC 1 cut(s) 97
BstX2I RGATCY 1 cut(s) 25
BstYI RGATCY 1 cut(s) 25
Bsu15I ATCGAT 1 cut(s) 324
BsuRI GGCC 2 cut(s) 11, 50
BsuTUI ATCGAT 1 cut(s) 324
BtsCI GGATG 1 cut(s) 120
BtsIMutI CAGTG 1 cut(s) 207
Cfr13I GGNCC 1 cut(s) 169
ClaI ATCGAT 1 cut(s) 324
Csp6I GTAC 1 cut(s) 19
CviAII CATG 1 cut(s) 292
CviJI RGCY 6 cut(s) 11, 50, 74, 83, 194, 355
CviKI_1 RGCY 6 cut(s) 11, 50, 74, 83, 194, 355
CviQI GTAC 1 cut(s) 19
DdeI CTNAG 1 cut(s) 43
DpnI GATC 3 cut(s) 27, 323, 341
DpnII GATC 3 cut(s) 25, 321, 339
EaeI YGGCCR 1 cut(s) 9
Eam1104I CTCTTC 1 cut(s) 117
EarI CTCTTC 1 cut(s) 117
Eco130I CCWWGG 1 cut(s) 12
Eco47I GGWCC 1 cut(s) 169
Eco57I CTGAAG 1 cut(s) 447
EcoNI CCTNNNNNAGG 1 cut(s) 349
EcoO109I RGGNCCY 1 cut(s) 169
EcoRII CCWGG 1 cut(s) 21
EcoT14I CCWWGG 1 cut(s) 12
ErhI CCWWGG 1 cut(s) 12
FaeI CATG 1 cut(s) 295
FaiI YATR 4 cut(s) 275, 293, 306, 308
FaqI GGGAC 1 cut(s) 155
FatI CATG 1 cut(s) 291
FauI CCCGC 1 cut(s) 185
FblI GTMKAC 2 cut(s) 129, 433
Fnu4HI GCNGC 1 cut(s) 72
FokI GGATG 1 cut(s) 107
Fsp4HI GCNGC 1 cut(s) 72
FspBI CTAG 1 cut(s) 356
GluI GCNGC 1 cut(s) 72
HaeIII GGCC 2 cut(s) 11, 50
HapII CCGG 2 cut(s) 84, 144
Hin1I GRCGYC 1 cut(s) 370
Hin1II CATG 1 cut(s) 295
HincII GTYRAC 2 cut(s) 130, 434
HindII GTYRAC 2 cut(s) 130, 434
HinfI GANTC 4 cut(s) 41, 126, 135, 147
HpaII CCGG 2 cut(s) 84, 144
HphI GGTGA 2 cut(s) 175, 334
Hpy166II GTNNAC 2 cut(s) 130, 434
Hpy188I TCNGA 4 cut(s) 30, 46, 125, 473
Hpy8I GTNNAC 2 cut(s) 130, 434
Hpy99I CGWCG 1 cut(s) 155
HpyAV CCTTC 1 cut(s) 422
HpyCH4III ACNGT 1 cut(s) 253
HpyCH4IV ACGT 1 cut(s) 370
HpyCH4V TGCA 4 cut(s) 4, 71, 215, 221
HpyF10VI GCNNNNNNNGC 2 cut(s) 80, 212
HpyF3I CTNAG 1 cut(s) 43
HpySE526I ACGT 1 cut(s) 370
Hsp92I GRCGYC 1 cut(s) 370
Hsp92II CATG 1 cut(s) 295
Kzo9I GATC 3 cut(s) 25, 321, 339
LguI GCTCTTC 1 cut(s) 117
LpnPI CCDG 7 cut(s) 8, 35, 97, 157, 180, 195, 396
Lsp1109I GCAGC 1 cut(s) 83
LweI GCATC 1 cut(s) 129
MaeI CTAG 1 cut(s) 356
MaeII ACGT 1 cut(s) 370
MalI GATC 3 cut(s) 27, 323, 341
MboI GATC 3 cut(s) 25, 321, 339
MboII GAAGA 2 cut(s) 97, 104
MfeI CAATTG 1 cut(s) 216
MflI RGATCY 1 cut(s) 25
MlsI TGGCCA 1 cut(s) 11
MluCI AATT 5 cut(s) 199, 216, 244, 332, 454
MluNI TGGCCA 1 cut(s) 11
MlyI GAGTC 4 cut(s) 35, 135, 141, 144
MnlI CCTC 8 cut(s) 40, 94, 110, 183, 191, 345, 355, 359
Mox20I TGGCCA 1 cut(s) 11
MscI TGGCCA 1 cut(s) 11
Msp20I TGGCCA 1 cut(s) 11
MspI CCGG 2 cut(s) 84, 144
MspR9I CCNGG 3 cut(s) 23, 85, 144
MunI CAATTG 1 cut(s) 216
MvaI CCWGG 1 cut(s) 23
MwoI GCNNNNNNNGC 2 cut(s) 80, 212
NciI CCSGG 2 cut(s) 85, 144
NdeII GATC 3 cut(s) 25, 321, 339
NlaIII CATG 1 cut(s) 295
NlaIV GGNNCC 1 cut(s) 171
NspI RCATGY 1 cut(s) 295
PciI ACATGT 1 cut(s) 291
PciSI GCTCTTC 1 cut(s) 117
PcsI WCGNNNNNNNCGW 3 cut(s) 96, 121, 135
PflFI GACNNNGTC 1 cut(s) 134
PkrI GCNGC 1 cut(s) 73
PleI GAGTC 4 cut(s) 35, 134, 141, 143
PpsI GAGTC 4 cut(s) 35, 134, 141, 143
PpuMI RGGWCCY 1 cut(s) 169
PscI ACATGT 1 cut(s) 291
Psp5II RGGWCCY 1 cut(s) 169
Psp6I CCWGG 1 cut(s) 21
PspGI CCWGG 1 cut(s) 21
PspN4I GGNNCC 1 cut(s) 171
PspPI GGNCC 1 cut(s) 169
PspPPI RGGWCCY 1 cut(s) 169
PsuI RGATCY 1 cut(s) 25
PsyI GACNNNGTC 1 cut(s) 134
RsaI GTAC 1 cut(s) 20
RsaNI GTAC 1 cut(s) 19
SalI GTCGAC 2 cut(s) 128, 432
SapI GCTCTTC 1 cut(s) 117
SatI GCNGC 1 cut(s) 72
Sau3AI GATC 3 cut(s) 25, 321, 339
Sau96I GGNCC 1 cut(s) 169
SchI GAGTC 4 cut(s) 35, 135, 141, 144
ScrFI CCNGG 3 cut(s) 23, 85, 144
SetI ASST 9 cut(s) 24, 76, 105, 171, 196, 228, 347, 373, 433
SfaNI GCATC 1 cut(s) 129
SfcI CTRYAG 1 cut(s) 249
SinI GGWCC 1 cut(s) 169
Sse9I AATT 5 cut(s) 199, 216, 244, 332, 454
SsiI CCGC 1 cut(s) 178
SspMI CTAG 1 cut(s) 356
StyD4I CCNGG 3 cut(s) 21, 83, 142
StyI CCWWGG 1 cut(s) 12
TaaI ACNGT 1 cut(s) 253
TaiI ACGT 1 cut(s) 373
TaqI TCGA 7 cut(s) 63, 90, 115, 129, 138, 324, 433
TaqII GACCGA 3 cut(s) 47, 147, 254
TasI AATT 5 cut(s) 199, 216, 244, 332, 454
TscAI CASTG 1 cut(s) 214
TseI GCWGC 1 cut(s) 71
TspDTI ATGAA 3 cut(s) 290, 345, 429
TspRI CASTG 1 cut(s) 214
Tth111I GACNNNGTC 1 cut(s) 134
VpaK11BI GGWCC 1 cut(s) 169
XagI CCTNNNNNAGG 1 cut(s) 349
XapI RAATTY 2 cut(s) 199, 454
XceI RCATGY 1 cut(s) 295
XcmI CCANNNNNNNNNTGG 1 cut(s) 19
XmiI GTMKAC 2 cut(s) 129, 433
XspI CTAG 1 cut(s) 356
ZraI GACGTC 1 cut(s) 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.