Rh5CG488300

Acyl-coenzyme A thioesterase 13-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000478
Physical Location & Seq
Reverse (-)
68050624 .. 68051670
1047 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG488300.1

Sequence Viewer

Length: 501 bp
ATGGCTCCGATTGGAGGAGAAGACGAGGACGTGAATATGAAAAAGAAGGCGAAAGAGTCTCTGGAGCTGAGCCAGGACGAGTCAGAGGCCGTGTCGCGAATCGTCGTACCGGCTCAGCGACCCGGCGAGTCGAGCATATACGATATGTTCTCTCTTAGAGGCATCCGAGTCGACCGAGCCCTACCCGGATTCGTCGTCTGTACTCTTAAGGTCCCTCCCCGCCTCACTGGGGGACAAAGAGTCAAAGACCACAGTGAATTGTCCATGACAACTAAAAGAAAGCTCACTAGTGCATTCATAGCTGGAAATTTGGCCCAAGGTGCAATTGCAAACCTTGTTGATGTAGTTGGTGCTTCTGTAGCATATATTCACGGTCTCCCTATGAATGTTTCCGTAGACATATCTGTCTCCTTCATGTCAAAGGCAAAGCTTGATGTAAGCAACCCTTCTTCGACATATACAGTGATCCATAGAAACGCTGAATTGTTGATACACGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
4HBT

Protein Analysis

166

Amino Acids

17.89

Weight (kDa)

7.88

Isoelectric Point (pI)

35.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000478)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29590
fragaria_vesca FvH4_3g37930 FvH4_3g37930 FvH4_3g37970 FvH4_3g37990 FvH4_3g37990 FvH4_3g38000 FvH4_3g38010 FvH4_3g38050 FvH4_3g38060
malus_domestica MD03G1077300.v1.1 MD03G1077400.v1.1 MD03G1077500.v1.1 MD08G1031500.v1.1 MD11G1081500.v1.1 MD11G1081600.v1.1 MD11G1081700.v1.1 MD11G1081800.v1.1 MD11G1081900.v1.1
prunus_persica Prupe.6G061800_v2.0.a1 Prupe.6G061900_v2.0.a1 Prupe.6G062000_v2.0.a1 Prupe.6G062000_v2.0.a1 Prupe.6G062100_v2.0.a1 Prupe.6G062100_v2.0.a1 Prupe.6G062200_v2.0.a1 Prupe.6G062300_v2.0.a1
pyrus_communis pycom03g06110 pycom03g06120 pycom03g06130 pycom11g06960 pycom11g06970 pycom11g06980 pycom11g07020
rosa_chinensis RchiOBHm_Chr5g0068361 RchiOBHm_Chr5g0068381 RchiOBHm_Chr5g0068391 RchiOBHm_Chr5g0068401 RchiOBHm_Chr5g0068411 RchiOBHm_Chr5g0068441
rosa_laevigata RLG00000035969 RLG00000035971 RLG00000035972 RLG00000035973 RLG00000035974
rosa_multiflora Rmu_sc0001418.1_g000002 Rmu_sc0003450.1_g000002 Rmu_sc0003450.1_g000003 Rmu_sc0003450.1_g000004 Rmu_sc0003450.1_g000007 Rmu_sc0005087.1_g000001 Rmu_sc0006054.1_g000001
rosa_roxburghii Rroxscaffold_1G00012370 Rroxscaffold_1G00012380 Rroxscaffold_1G00012390 Rroxscaffold_1G00012400 Rroxscaffold_1G00012420 Rroxscaffold_1G00013110 Rroxscaffold_1G00013120 Rroxscaffold_1G00013130 Rroxscaffold_1G00013150 Rroxscaffold_1G00013160
rosa_rugosa Rorug05G0389200 Rorug05G0389400 Rorug05G0389500 Rorug05G0389600 Rorug05G0389600
rosa_samantha Rh5AG447900 Rh5AG448100 Rh5AG448200 Rh5AG448300 Rh5AG448400 Rh5BG465700 Rh5BG465900 Rh5BG466200 Rh5BG466300 Rh5BG466700 Rh5CG487500 Rh5CG487800 Rh5CG487900 Rh5CG488300 Rh5DG479500 Rh5DG479700 Rh5DG479800 Rh5DG480100
rosa_wichuraiana Rw5G041800 Rw5G041830 Rw5G041840 Rw5G041850 Rw5G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 404
AccI GTMKAC 2 cut(s) 171, 396
AccII CGCG 1 cut(s) 97
AciI CCGC 1 cut(s) 220
AclWI GGATC 1 cut(s) 460
AcsI RAATTY 1 cut(s) 307
AfaI GTAC 2 cut(s) 108, 202
AfiI CCNNNNNNNGG 2 cut(s) 14, 229
AflII CTTAAG 1 cut(s) 206
AflIII ACRYGT 1 cut(s) 493
AhdI GACNNNNNGTC 1 cut(s) 239
AhlI ACTAGT 1 cut(s) 287
AjiI CACGTC 2 cut(s) 31, 496
AjnI CCWGG 1 cut(s) 72
AluBI AGCT 4 cut(s) 67, 283, 302, 430
AluI AGCT 4 cut(s) 67, 283, 302, 430
Alw26I GTCTC 3 cut(s) 63, 380, 412
AlwI GGATC 1 cut(s) 460
AoxI GGCC 2 cut(s) 87, 312
ApoI RAATTY 1 cut(s) 307
AspS9I GGNCC 2 cut(s) 211, 313
AsuC2I CCSGG 2 cut(s) 123, 186
AvaII GGWCC 1 cut(s) 211
BanII GRGCYC 1 cut(s) 181
BbsI GAAGAC 1 cut(s) 27
BceAI ACGGC 1 cut(s) 74
BcgI CGANNNNNNTGC 2 cut(s) 151, 185
BciT130I CCWGG 1 cut(s) 74
BcnI CCSGG 2 cut(s) 123, 186
BcoDI GTCTC 3 cut(s) 63, 380, 412
BcuI ACTAGT 1 cut(s) 287
BfaI CTAG 1 cut(s) 288
BfmI CTRYAG 1 cut(s) 357
BfrI CTTAAG 1 cut(s) 206
BlpI GCTNAGC 2 cut(s) 68, 114
Bme1390I CCNGG 3 cut(s) 74, 123, 186
Bme18I GGWCC 1 cut(s) 211
BmeRI GACNNNNNGTC 1 cut(s) 239
BmgBI CACGTC 2 cut(s) 31, 496
BmgT120I GGNCC 2 cut(s) 211, 313
BmiI GGNNCC 2 cut(s) 6, 213
BmrFI CCNGG 3 cut(s) 74, 123, 186
BmrI ACTGGG 1 cut(s) 237
BmsI GCATC 1 cut(s) 171
BmuI ACTGGG 1 cut(s) 237
BpiI GAAGAC 1 cut(s) 27
BpmI CTGGAG 1 cut(s) 83
Bpu1102I GCTNAGC 2 cut(s) 68, 114
BpuMI CCSGG 2 cut(s) 123, 186
BsaI GGTCTC 1 cut(s) 380
BsaJI CCNNGG 1 cut(s) 316
Bsc4I CCNNNNNNNGG 2 cut(s) 14, 229
Bse118I RCCGGY 1 cut(s) 109
Bse1I ACTGG 1 cut(s) 232
BseBI CCWGG 1 cut(s) 74
BseDI CCNNGG 1 cut(s) 316
BseGI GGATG 1 cut(s) 162
BseLI CCNNNNNNNGG 2 cut(s) 14, 229
BseMII CTCAG 2 cut(s) 59, 128
BseNI ACTGG 1 cut(s) 232
BseRI GAGGAG 1 cut(s) 30
Bsh1236I CGCG 1 cut(s) 97
Bsh1285I CGRYCG 1 cut(s) 175
BshFI GGCC 2 cut(s) 89, 314
BsiEI CGRYCG 1 cut(s) 175
BsiSI CCGG 3 cut(s) 110, 123, 186
BslFI GGGAC 2 cut(s) 197, 246
BslI CCNNNNNNNGG 2 cut(s) 14, 229
BsmAI GTCTC 3 cut(s) 63, 380, 412
BsmFI GGGAC 2 cut(s) 197, 246
BsmI GAATGC 1 cut(s) 293
BsnI GGCC 2 cut(s) 89, 314
Bso31I GGTCTC 1 cut(s) 380
Bsp1286I GDGCHC 1 cut(s) 181
Bsp143I GATC 1 cut(s) 465
Bsp1720I GCTNAGC 2 cut(s) 68, 114
Bsp68I TCGCGA 1 cut(s) 97
BspACI CCGC 1 cut(s) 220
BspANI GGCC 2 cut(s) 89, 314
BspCNI CTCAG 2 cut(s) 60, 127
BspFNI CGCG 1 cut(s) 97
BspLI GGNNCC 2 cut(s) 6, 213
BspPI GGATC 1 cut(s) 460
BspTI CTTAAG 1 cut(s) 206
BspTNI GGTCTC 1 cut(s) 380
BsrFI RCCGGY 1 cut(s) 109
BsrI ACTGG 1 cut(s) 232
BssAI RCCGGY 1 cut(s) 109
BssECI CCNNGG 1 cut(s) 316
BssMI GATC 1 cut(s) 465
BssT1I CCWWGG 1 cut(s) 316
Bst2UI CCWGG 1 cut(s) 74
Bst4CI ACNGT 3 cut(s) 254, 374, 463
BstAFI CTTAAG 1 cut(s) 206
BstDEI CTNAG 3 cut(s) 68, 114, 155
BstF5I GGATG 1 cut(s) 162
BstFNI CGCG 1 cut(s) 97
BstKTI GATC 1 cut(s) 468
BstMAI GTCTC 3 cut(s) 63, 380, 412
BstMBI GATC 1 cut(s) 465
BstMCI CGRYCG 1 cut(s) 175
BstMWI GCNNNNNNNGC 4 cut(s) 132, 299, 320, 359
BstNI CCWGG 1 cut(s) 74
BstSCI CCNGG 3 cut(s) 72, 121, 184
BstSFI CTRYAG 1 cut(s) 357
BstUI CGCG 1 cut(s) 97
BstV2I GAAGAC 1 cut(s) 27
BsuRI GGCC 2 cut(s) 89, 314
BtrI CACGTC 2 cut(s) 31, 496
BtsCI GGATG 1 cut(s) 162
BtsIMutI CAGTG 3 cut(s) 225, 259, 468
BtuMI TCGCGA 1 cut(s) 97
Cfr10I RCCGGY 1 cut(s) 109
Cfr13I GGNCC 2 cut(s) 211, 313
Csp6I GTAC 2 cut(s) 107, 201
CviAII CATG 2 cut(s) 265, 415
CviQI GTAC 2 cut(s) 107, 201
DdeI CTNAG 3 cut(s) 68, 114, 155
DpnI GATC 1 cut(s) 467
DpnII GATC 1 cut(s) 465
DrdI GACNNNNNNGTC 1 cut(s) 404
DriI GACNNNNNGTC 1 cut(s) 239
DseDI GACNNNNNNGTC 1 cut(s) 404
Eam1105I GACNNNNNGTC 1 cut(s) 239
Eco130I CCWWGG 1 cut(s) 316
Eco24I GRGCYC 1 cut(s) 181
Eco31I GGTCTC 1 cut(s) 380
Eco47I GGWCC 1 cut(s) 211
EcoO109I RGGNCCY 1 cut(s) 211
EcoRII CCWGG 1 cut(s) 72
EcoT14I CCWWGG 1 cut(s) 316
EcoT38I GRGCYC 1 cut(s) 181
ErhI CCWWGG 1 cut(s) 316
FaeI CATG 2 cut(s) 268, 418
FalI AAGNNNNNCTT 2 cut(s) 430, 462
FaqI GGGAC 2 cut(s) 197, 246
FatI CATG 2 cut(s) 264, 414
FauI CCCGC 1 cut(s) 227
FblI GTMKAC 2 cut(s) 171, 396
FokI GGATG 1 cut(s) 149
FriOI GRGCYC 1 cut(s) 181
FspBI CTAG 1 cut(s) 288
GsuI CTGGAG 1 cut(s) 83
HaeIII GGCC 2 cut(s) 89, 314
HapII CCGG 3 cut(s) 110, 123, 186
Hin1II CATG 2 cut(s) 268, 418
HincII GTYRAC 1 cut(s) 172
HindII GTYRAC 1 cut(s) 172
HindIII AAGCTT 1 cut(s) 428
HinfI GANTC 7 cut(s) 56, 80, 99, 128, 168, 189, 240
HpaII CCGG 3 cut(s) 110, 123, 186
Hpy166II GTNNAC 2 cut(s) 172, 397
Hpy188I TCNGA 3 cut(s) 9, 85, 167
Hpy188III TCNNGA 2 cut(s) 62, 96
Hpy8I GTNNAC 2 cut(s) 172, 397
Hpy99I CGWCG 2 cut(s) 107, 197
HpyAV CCTTC 3 cut(s) 40, 421, 456
HpyCH4III ACNGT 3 cut(s) 254, 374, 463
HpyCH4IV ACGT 2 cut(s) 30, 495
HpyCH4V TGCA 3 cut(s) 293, 323, 329
HpyF10VI GCNNNNNNNGC 4 cut(s) 132, 299, 320, 359
HpyF3I CTNAG 3 cut(s) 68, 114, 155
HpySE526I ACGT 2 cut(s) 30, 495
Hsp92II CATG 2 cut(s) 268, 418
Kzo9I GATC 1 cut(s) 465
LmnI GCTCC 2 cut(s) 10, 64
LpnPI CCDG 8 cut(s) 47, 59, 86, 123, 136, 199, 213, 288
LweI GCATC 1 cut(s) 171
MaeI CTAG 1 cut(s) 288
MaeII ACGT 2 cut(s) 30, 495
MalI GATC 1 cut(s) 467
MboI GATC 1 cut(s) 465
MboII GAAGA 2 cut(s) 32, 441
MfeI CAATTG 1 cut(s) 324
MhlI GDGCHC 1 cut(s) 181
MluCI AATT 4 cut(s) 257, 307, 324, 482
MlyI GAGTC 5 cut(s) 65, 89, 137, 177, 249
MnlI CCTC 6 cut(s) 8, 19, 79, 152, 225, 233
MseI TTAA 1 cut(s) 207
MspCI CTTAAG 1 cut(s) 206
MspI CCGG 3 cut(s) 110, 123, 186
MspR9I CCNGG 3 cut(s) 74, 123, 186
MunI CAATTG 1 cut(s) 324
Mva1269I GAATGC 1 cut(s) 293
MvaI CCWGG 1 cut(s) 74
MvnI CGCG 1 cut(s) 97
MwoI GCNNNNNNNGC 4 cut(s) 132, 299, 320, 359
NciI CCSGG 2 cut(s) 123, 186
NdeII GATC 1 cut(s) 465
NlaIII CATG 2 cut(s) 268, 418
NlaIV GGNNCC 2 cut(s) 6, 213
NruI TCGCGA 1 cut(s) 97
PctI GAATGC 1 cut(s) 293
PfeI GAWTC 2 cut(s) 99, 189
PleI GAGTC 5 cut(s) 64, 88, 136, 176, 248
PpsI GAGTC 5 cut(s) 64, 88, 136, 176, 248
PpuMI RGGWCCY 1 cut(s) 211
Psp5II RGGWCCY 1 cut(s) 211
Psp6I CCWGG 1 cut(s) 72
PspGI CCWGG 1 cut(s) 72
PspN4I GGNNCC 2 cut(s) 6, 213
PspPI GGNCC 2 cut(s) 211, 313
PspPPI RGGWCCY 1 cut(s) 211
RruI TCGCGA 1 cut(s) 97
RsaI GTAC 2 cut(s) 108, 202
RsaNI GTAC 2 cut(s) 107, 201
SalI GTCGAC 1 cut(s) 170
SaqAI TTAA 1 cut(s) 207
Sau3AI GATC 1 cut(s) 465
Sau96I GGNCC 2 cut(s) 211, 313
SchI GAGTC 5 cut(s) 65, 89, 137, 177, 249
ScrFI CCNGG 3 cut(s) 74, 123, 186
SduI GDGCHC 1 cut(s) 181
SetI ASST 9 cut(s) 33, 69, 213, 285, 304, 322, 336, 432, 498
SfaNI GCATC 1 cut(s) 171
SfcI CTRYAG 1 cut(s) 357
SinI GGWCC 1 cut(s) 211
SmlI CTYRAG 1 cut(s) 206
SmoI CTYRAG 1 cut(s) 206
SpeI ACTAGT 1 cut(s) 287
Sse9I AATT 4 cut(s) 257, 307, 324, 482
SsiI CCGC 1 cut(s) 220
SspMI CTAG 1 cut(s) 288
StyD4I CCNGG 3 cut(s) 72, 121, 184
StyI CCWWGG 1 cut(s) 316
TaaI ACNGT 3 cut(s) 254, 374, 463
TaiI ACGT 2 cut(s) 33, 498
TaqI TCGA 3 cut(s) 131, 171, 452
TaqII GACCGA 1 cut(s) 189
TasI AATT 4 cut(s) 257, 307, 324, 482
TatI WGTACW 1 cut(s) 200
TfiI GAWTC 2 cut(s) 99, 189
Tru1I TTAA 1 cut(s) 207
Tru9I TTAA 1 cut(s) 207
TscAI CASTG 3 cut(s) 232, 259, 468
TspDTI ATGAA 4 cut(s) 53, 286, 398, 403
TspGWI ACGGA 1 cut(s) 382
TspRI CASTG 3 cut(s) 232, 259, 468
Vha464I CTTAAG 1 cut(s) 206
VpaK11BI GGWCC 1 cut(s) 211
XapI RAATTY 1 cut(s) 307
XmiI GTMKAC 2 cut(s) 171, 396
XspI CTAG 1 cut(s) 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.