RchiOBHm_Chr5g0068361

Acyl-coenzyme A thioesterase 13-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000478
Physical Location & Seq
Reverse (-)
74371758 .. 74375106
3349 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ34381

Sequence Viewer

Length: 930 bp
ATGGAGAACGAGGCAAAGAAGTTTTTGGAGCTGAGCGAGCAAGAGTCGGAGACTGTGTCGGGACTGGCCTTACCAGAATTCCGGCTCGGTGAGGCAACCATCTATGATCATTTGGCTCTAAGAGGCATCCGAGTCGACCGAGTCGAACCAGGGCTGGTTGTGTGTACTTTCAAGGTCCCTCTACGACTCCTTGATAGAGATGGAAATTTTGCAAGTGGTGCAATTGCAAACCTGGTTGATGTAGTTGGTAGTTGCGTGGTTTATGTTTCCGGTGCACCTATGAATGTCACGATGGAGGTGTCCATATCGTATTTGTCTACGGCAAAGCTTGATGATGAGTTAGAGATAACTTCAAGGTTGTTAGGAGTTAGGACAAAAAGGAGAGAGTTAGTTCGAGGCAGCATGCCCTTCTTTCACGTCGGAGTGAGTGAGTCGATCAGGGACGGATCCCACAATATGCAGATGGCCAAGGAGTACCTGGATCTGACCGATCACGACTCAGAGGCCGTATCGCAACTCGACATTGCAGCTCAACGAGCCGGGGTCGAGTTCTACGAGGTCTTCGCTCTTCGAGGCATCCGAGTCGACCGAGTCGAACCCGGACTCGTCGTTTGTTCTTTTAAGGTCCCTCCCCGCCTCACCGACAGAGCTGGAAATTTTGCCACTGGTGCAATTGCAAACCTTGTTGATGTAGTTGGTAATTCTACAGTTTATTGTCTCGGTCGCCCTATGAATGTTTCAATAGACATGTCCATCTCGTATATGTCAAAGGCAAAGATCGATGATGAATTAGAGATCACCTCAAAGAGGTTAGGACAAAGAGGACGTTATTTTGGAACAATAGTGGTGCTGAAAAACAAAGCAACTGGGGAGATTATAGCTGAAGGTCGACATTCATTGTTTCGTTCAAATTTTGTTCCCAAACTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
4HBT

Protein Analysis

309

Amino Acids

34.05

Weight (kDa)

5.84

Isoelectric Point (pI)

30.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000478)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29590
fragaria_vesca FvH4_3g37930 FvH4_3g37930 FvH4_3g37970 FvH4_3g37990 FvH4_3g37990 FvH4_3g38000 FvH4_3g38010 FvH4_3g38050 FvH4_3g38060
malus_domestica MD03G1077300.v1.1 MD03G1077400.v1.1 MD03G1077500.v1.1 MD08G1031500.v1.1 MD11G1081500.v1.1 MD11G1081600.v1.1 MD11G1081700.v1.1 MD11G1081800.v1.1 MD11G1081900.v1.1
prunus_persica Prupe.6G061800_v2.0.a1 Prupe.6G061900_v2.0.a1 Prupe.6G062000_v2.0.a1 Prupe.6G062000_v2.0.a1 Prupe.6G062100_v2.0.a1 Prupe.6G062100_v2.0.a1 Prupe.6G062200_v2.0.a1 Prupe.6G062300_v2.0.a1
pyrus_communis pycom03g06110 pycom03g06120 pycom03g06130 pycom11g06960 pycom11g06970 pycom11g06980 pycom11g07020
rosa_chinensis RchiOBHm_Chr5g0068361 RchiOBHm_Chr5g0068381 RchiOBHm_Chr5g0068391 RchiOBHm_Chr5g0068401 RchiOBHm_Chr5g0068411 RchiOBHm_Chr5g0068441
rosa_laevigata RLG00000035969 RLG00000035971 RLG00000035972 RLG00000035973 RLG00000035974
rosa_multiflora Rmu_sc0001418.1_g000002 Rmu_sc0003450.1_g000002 Rmu_sc0003450.1_g000003 Rmu_sc0003450.1_g000004 Rmu_sc0003450.1_g000007 Rmu_sc0005087.1_g000001 Rmu_sc0006054.1_g000001
rosa_roxburghii Rroxscaffold_1G00012370 Rroxscaffold_1G00012380 Rroxscaffold_1G00012390 Rroxscaffold_1G00012400 Rroxscaffold_1G00012420 Rroxscaffold_1G00013110 Rroxscaffold_1G00013120 Rroxscaffold_1G00013130 Rroxscaffold_1G00013150 Rroxscaffold_1G00013160
rosa_rugosa Rorug05G0389200 Rorug05G0389400 Rorug05G0389500 Rorug05G0389600 Rorug05G0389600
rosa_samantha Rh5AG447900 Rh5AG448100 Rh5AG448200 Rh5AG448300 Rh5AG448400 Rh5BG465700 Rh5BG465900 Rh5BG466200 Rh5BG466300 Rh5BG466700 Rh5CG487500 Rh5CG487800 Rh5CG487900 Rh5CG488300 Rh5DG479500 Rh5DG479700 Rh5DG479800 Rh5DG480100
rosa_wichuraiana Rw5G041800 Rw5G041830 Rw5G041840 Rw5G041850 Rw5G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 4 cut(s) 135, 317, 585, 889
AciI CCGC 1 cut(s) 634
AclWI GGATC 3 cut(s) 441, 454, 489
AcoI YGGCCR 1 cut(s) 465
AcsI RAATTY 4 cut(s) 77, 205, 655, 910
AcuI CTGAAG 1 cut(s) 903
AfaI GTAC 2 cut(s) 166, 476
AfiI CCNNNNNNNGG 1 cut(s) 807
AflIII ACRYGT 1 cut(s) 747
AgsI TTSAA 4 cut(s) 172, 354, 741, 909
AjiI CACGTC 1 cut(s) 418
AjnI CCWGG 3 cut(s) 148, 231, 477
AluBI AGCT 5 cut(s) 31, 328, 530, 650, 881
AluI AGCT 5 cut(s) 31, 328, 530, 650, 881
Alw21I GWGCWC 1 cut(s) 277
Alw26I GTCTC 2 cut(s) 44, 722
Alw44I GTGCAC 1 cut(s) 273
AlwI GGATC 3 cut(s) 441, 454, 489
AoxI GGCC 3 cut(s) 66, 465, 504
ApaLI GTGCAC 1 cut(s) 273
ApeKI GCWGC 2 cut(s) 399, 527
ApoI RAATTY 4 cut(s) 77, 205, 655, 910
ArsI GACNNNNNNTTYG 2 cut(s) 594, 626
AspS9I GGNCC 2 cut(s) 175, 625
AsuC2I CCSGG 2 cut(s) 541, 600
AsuHPI GGTGA 3 cut(s) 101, 631, 790
AvaII GGWCC 2 cut(s) 175, 625
BaeGI GKGCMC 1 cut(s) 277
BalI TGGCCA 1 cut(s) 467
BamHI GGATCC 1 cut(s) 446
BbsI GAAGAC 1 cut(s) 553
Bbv12I GWGCWC 1 cut(s) 277
BbvI GCAGC 2 cut(s) 411, 539
BccI CCATC 5 cut(s) 107, 194, 286, 457, 761
BceAI ACGGC 2 cut(s) 336, 491
BcgI CGANNNNNNTGC 4 cut(s) 115, 149, 565, 599
BciT130I CCWGG 3 cut(s) 150, 233, 479
BclI TGATCA 1 cut(s) 106
BcnI CCSGG 2 cut(s) 541, 600
BcoDI GTCTC 2 cut(s) 44, 722
BfmI CTRYAG 1 cut(s) 705
BisI GCNGC 2 cut(s) 400, 528
BlpI GCTNAGC 1 cut(s) 32
BlsI GCNGC 2 cut(s) 401, 529
Bme1390I CCNGG 5 cut(s) 150, 233, 479, 541, 600
Bme18I GGWCC 2 cut(s) 175, 625
BmgBI CACGTC 1 cut(s) 418
BmgT120I GGNCC 2 cut(s) 175, 625
BmiI GGNNCC 3 cut(s) 177, 448, 627
BmrFI CCNGG 5 cut(s) 150, 233, 479, 541, 600
BmrI ACTGGG 1 cut(s) 876
BmsI GCATC 2 cut(s) 135, 585
BmuI ACTGGG 1 cut(s) 876
BpiI GAAGAC 1 cut(s) 553
BplI GAGNNNNNCTC 2 cut(s) 785, 817
Bpu1102I GCTNAGC 1 cut(s) 32
BpuMI CCSGG 2 cut(s) 541, 600
Bsa29I ATCGAT 1 cut(s) 780
BsaJI CCNNGG 3 cut(s) 149, 468, 540
BsaWI WCCGGW 1 cut(s) 269
BsaXI ACNNNNNCTCC 2 cut(s) 41, 71
Bsc4I CCNNNNNNNGG 1 cut(s) 807
Bse1I ACTGG 3 cut(s) 69, 670, 871
Bse3DI GCAATG 1 cut(s) 522
BseBI CCWGG 3 cut(s) 150, 233, 479
BseCI ATCGAT 1 cut(s) 780
BseDI CCNNGG 3 cut(s) 149, 468, 540
BseGI GGATG 2 cut(s) 126, 576
BseLI CCNNNNNNNGG 1 cut(s) 807
BseMI GCAATG 1 cut(s) 522
BseMII CTCAG 2 cut(s) 23, 513
BseNI ACTGG 3 cut(s) 69, 670, 871
BseSI GKGCMC 1 cut(s) 277
BseXI GCAGC 2 cut(s) 411, 539
Bsh1285I CGRYCG 3 cut(s) 139, 589, 724
BshFI GGCC 3 cut(s) 68, 467, 506
BshVI ATCGAT 1 cut(s) 780
BsiEI CGRYCG 3 cut(s) 139, 589, 724
BsiHKAI GWGCWC 1 cut(s) 277
BsiSI CCGG 4 cut(s) 82, 270, 540, 600
BslFI GGGAC 4 cut(s) 75, 161, 455, 611
BslI CCNNNNNNNGG 1 cut(s) 807
BsmAI GTCTC 2 cut(s) 44, 722
BsmFI GGGAC 4 cut(s) 75, 161, 455, 611
BsnI GGCC 3 cut(s) 68, 467, 506
Bsp1286I GDGCHC 1 cut(s) 277
Bsp143I GATC 7 cut(s) 106, 435, 446, 481, 490, 777, 795
Bsp1720I GCTNAGC 1 cut(s) 32
BspACI CCGC 1 cut(s) 634
BspANI GGCC 3 cut(s) 68, 467, 506
BspCNI CTCAG 2 cut(s) 24, 512
BspDI ATCGAT 1 cut(s) 780
BspLI GGNNCC 3 cut(s) 177, 448, 627
BspPI GGATC 3 cut(s) 441, 454, 489
BspQI GCTCTTC 1 cut(s) 573
BsrDI GCAATG 1 cut(s) 522
BsrI ACTGG 3 cut(s) 69, 670, 871
BssECI CCNNGG 3 cut(s) 149, 468, 540
BssMI GATC 7 cut(s) 106, 435, 446, 481, 490, 777, 795
BssT1I CCWWGG 1 cut(s) 468
Bst2UI CCWGG 3 cut(s) 150, 233, 479
Bst4CI ACNGT 2 cut(s) 55, 709
Bst6I CTCTTC 1 cut(s) 573
BstAPI GCANNNNNTGC 1 cut(s) 218
BstC8I GCNNGC 2 cut(s) 38, 404
BstDEI CTNAG 3 cut(s) 32, 119, 499
BstENI CCTNNNNNAGG 1 cut(s) 805
BstF5I GGATG 2 cut(s) 126, 576
BstKTI GATC 7 cut(s) 109, 438, 449, 484, 493, 780, 798
BstMAI GTCTC 2 cut(s) 44, 722
BstMBI GATC 7 cut(s) 106, 435, 446, 481, 490, 777, 795
BstMCI CGRYCG 3 cut(s) 139, 589, 724
BstMWI GCNNNNNNNGC 4 cut(s) 37, 218, 536, 668
BstNI CCWGG 3 cut(s) 150, 233, 479
BstNSI RCATGY 2 cut(s) 406, 751
BstSCI CCNGG 5 cut(s) 148, 231, 477, 539, 598
BstSFI CTRYAG 1 cut(s) 705
BstSLI GKGCMC 1 cut(s) 277
BstV1I GCAGC 2 cut(s) 411, 539
BstV2I GAAGAC 1 cut(s) 553
BstX2I RGATCY 2 cut(s) 446, 481
BstYI RGATCY 2 cut(s) 446, 481
Bsu15I ATCGAT 1 cut(s) 780
BsuRI GGCC 3 cut(s) 68, 467, 506
BsuTUI ATCGAT 1 cut(s) 780
BtrI CACGTC 1 cut(s) 418
BtsCI GGATG 2 cut(s) 126, 576
BtsIMutI CAGTG 1 cut(s) 663
Cac8I GCNNGC 2 cut(s) 38, 404
Cfr13I GGNCC 2 cut(s) 175, 625
ClaI ATCGAT 1 cut(s) 780
CsiI ACCWGGT 1 cut(s) 231
Csp6I GTAC 2 cut(s) 165, 475
CviAII CATG 2 cut(s) 403, 748
CviQI GTAC 2 cut(s) 165, 475
DdeI CTNAG 3 cut(s) 32, 119, 499
DpnI GATC 7 cut(s) 108, 437, 448, 483, 492, 779, 797
DpnII GATC 7 cut(s) 106, 435, 446, 481, 490, 777, 795
EaeI YGGCCR 1 cut(s) 465
Eam1104I CTCTTC 1 cut(s) 573
EarI CTCTTC 1 cut(s) 573
Eco130I CCWWGG 1 cut(s) 468
Eco47I GGWCC 2 cut(s) 175, 625
Eco57I CTGAAG 1 cut(s) 903
EcoNI CCTNNNNNAGG 1 cut(s) 805
EcoO109I RGGNCCY 2 cut(s) 175, 625
EcoRI GAATTC 1 cut(s) 77
EcoRII CCWGG 3 cut(s) 148, 231, 477
EcoT14I CCWWGG 1 cut(s) 468
ErhI CCWWGG 1 cut(s) 468
FaeI CATG 2 cut(s) 406, 751
FaqI GGGAC 4 cut(s) 75, 161, 455, 611
FatI CATG 2 cut(s) 402, 747
FauI CCCGC 1 cut(s) 641
FbaI TGATCA 1 cut(s) 106
FblI GTMKAC 4 cut(s) 135, 317, 585, 889
Fnu4HI GCNGC 2 cut(s) 400, 528
FokI GGATG 2 cut(s) 113, 563
Fsp4HI GCNGC 2 cut(s) 400, 528
GluI GCNGC 2 cut(s) 400, 528
HaeIII GGCC 3 cut(s) 68, 467, 506
HapII CCGG 4 cut(s) 82, 270, 540, 600
Hin1II CATG 2 cut(s) 406, 751
HincII GTYRAC 3 cut(s) 136, 586, 890
HindII GTYRAC 3 cut(s) 136, 586, 890
HindIII AAGCTT 1 cut(s) 326
HinfI GANTC 9 cut(s) 44, 132, 141, 186, 431, 497, 582, 591, 603
HpaII CCGG 4 cut(s) 82, 270, 540, 600
HphI GGTGA 3 cut(s) 101, 631, 790
Hpy166II GTNNAC 6 cut(s) 136, 165, 275, 318, 586, 890
Hpy188I TCNGA 7 cut(s) 49, 131, 422, 486, 502, 581, 929
Hpy188III TCNNGA 3 cut(s) 60, 289, 494
Hpy8I GTNNAC 6 cut(s) 136, 165, 275, 318, 586, 890
Hpy99I CGWCG 2 cut(s) 422, 611
HpyAV CCTTC 2 cut(s) 418, 878
HpyCH4III ACNGT 2 cut(s) 55, 709
HpyCH4IV ACGT 2 cut(s) 417, 826
HpyCH4V TGCA 8 cut(s) 212, 221, 227, 275, 460, 527, 671, 677
HpyF10VI GCNNNNNNNGC 4 cut(s) 37, 218, 536, 668
HpyF3I CTNAG 3 cut(s) 32, 119, 499
HpySE526I ACGT 2 cut(s) 417, 826
Hsp92II CATG 2 cut(s) 406, 751
Ksp22I TGATCA 1 cut(s) 106
Kzo9I GATC 7 cut(s) 106, 435, 446, 481, 490, 777, 795
LguI GCTCTTC 1 cut(s) 573
LmnI GCTCC 1 cut(s) 28
Lsp1109I GCAGC 2 cut(s) 411, 539
LweI GCATC 2 cut(s) 135, 585
MabI ACCWGGT 1 cut(s) 231
MaeII ACGT 2 cut(s) 417, 826
MaeIII GTNAC 1 cut(s) 286
MalI GATC 7 cut(s) 108, 437, 448, 483, 492, 779, 797
MboI GATC 7 cut(s) 106, 435, 446, 481, 490, 777, 795
MboII GAAGA 2 cut(s) 553, 560
MfeI CAATTG 2 cut(s) 222, 672
MflI RGATCY 2 cut(s) 446, 481
MhlI GDGCHC 1 cut(s) 277
MlsI TGGCCA 1 cut(s) 467
MluCI AATT 8 cut(s) 77, 205, 222, 655, 672, 700, 788, 910
MluNI TGGCCA 1 cut(s) 467
MlyI GAGTC 9 cut(s) 53, 141, 150, 180, 440, 491, 591, 597, 600
MmeI TCCRAC 2 cut(s) 27, 400
Mox20I TGGCCA 1 cut(s) 467
MscI TGGCCA 1 cut(s) 467
MseI TTAA 1 cut(s) 621
Msp20I TGGCCA 1 cut(s) 467
MspI CCGG 4 cut(s) 82, 270, 540, 600
MspR9I CCNGG 5 cut(s) 150, 233, 479, 541, 600
MunI CAATTG 2 cut(s) 222, 672
MvaI CCWGG 3 cut(s) 150, 233, 479
MwoI GCNNNNNNNGC 4 cut(s) 37, 218, 536, 668
NciI CCSGG 2 cut(s) 541, 600
NdeII GATC 7 cut(s) 106, 435, 446, 481, 490, 777, 795
NlaIII CATG 2 cut(s) 406, 751
NlaIV GGNNCC 3 cut(s) 177, 448, 627
NmuCI GTSAC 1 cut(s) 286
NspI RCATGY 2 cut(s) 406, 751
PaeI GCATGC 1 cut(s) 406
PciI ACATGT 1 cut(s) 747
PciSI GCTCTTC 1 cut(s) 573
PcsI WCGNNNNNNNCGW 4 cut(s) 141, 552, 577, 591
PflFI GACNNNGTC 3 cut(s) 55, 140, 590
PkrI GCNGC 2 cut(s) 401, 529
PleI GAGTC 9 cut(s) 52, 140, 149, 180, 439, 491, 590, 597, 599
PpsI GAGTC 9 cut(s) 52, 140, 149, 180, 439, 491, 590, 597, 599
PpuMI RGGWCCY 2 cut(s) 175, 625
PscI ACATGT 1 cut(s) 747
Psp5II RGGWCCY 2 cut(s) 175, 625
Psp6I CCWGG 3 cut(s) 148, 231, 477
PspGI CCWGG 3 cut(s) 148, 231, 477
PspN4I GGNNCC 3 cut(s) 177, 448, 627
PspPI GGNCC 2 cut(s) 175, 625
PspPPI RGGWCCY 2 cut(s) 175, 625
PsuI RGATCY 2 cut(s) 446, 481
PsyI GACNNNGTC 3 cut(s) 55, 140, 590
RsaI GTAC 2 cut(s) 166, 476
RsaNI GTAC 2 cut(s) 165, 475
SalI GTCGAC 3 cut(s) 134, 584, 888
SapI GCTCTTC 1 cut(s) 573
SaqAI TTAA 1 cut(s) 621
SatI GCNGC 2 cut(s) 400, 528
Sau3AI GATC 7 cut(s) 106, 435, 446, 481, 490, 777, 795
Sau96I GGNCC 2 cut(s) 175, 625
SchI GAGTC 9 cut(s) 53, 141, 150, 180, 440, 491, 591, 597, 600
ScrFI CCNGG 5 cut(s) 150, 233, 479, 541, 600
SduI GDGCHC 1 cut(s) 277
SexAI ACCWGGT 1 cut(s) 231
SfaNI GCATC 2 cut(s) 135, 585
SfcI CTRYAG 1 cut(s) 705
SinI GGWCC 2 cut(s) 175, 625
SphI GCATGC 1 cut(s) 406
Sse9I AATT 8 cut(s) 77, 205, 222, 655, 672, 700, 788, 910
SsiI CCGC 1 cut(s) 634
StyD4I CCNGG 5 cut(s) 148, 231, 477, 539, 598
StyI CCWWGG 1 cut(s) 468
TaaI ACNGT 2 cut(s) 55, 709
TaiI ACGT 2 cut(s) 420, 829
TaqII GACCGA 4 cut(s) 153, 503, 603, 710
TasI AATT 8 cut(s) 77, 205, 222, 655, 672, 700, 788, 910
TatI WGTACW 1 cut(s) 164
Tru1I TTAA 1 cut(s) 621
Tru9I TTAA 1 cut(s) 621
TscAI CASTG 1 cut(s) 670
TseFI GTSAC 1 cut(s) 286
TseI GCWGC 2 cut(s) 399, 527
Tsp45I GTSAC 1 cut(s) 286
TspDTI ATGAA 4 cut(s) 296, 746, 801, 885
TspGWI ACGGA 1 cut(s) 459
TspRI CASTG 1 cut(s) 670
Tth111I GACNNNGTC 3 cut(s) 55, 140, 590
VneI GTGCAC 1 cut(s) 273
VpaK11BI GGWCC 2 cut(s) 175, 625
XagI CCTNNNNNAGG 1 cut(s) 805
XapI RAATTY 4 cut(s) 77, 205, 655, 910
XceI RCATGY 2 cut(s) 406, 751
XcmI CCANNNNNNNNNTGG 1 cut(s) 475
XmiI GTMKAC 4 cut(s) 135, 317, 585, 889
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.