Rroxscaffold_1G00012370

Acyl-coenzyme A thioesterase 13-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000478
Physical Location & Seq
Forward (+)
15257813 .. 15259074
1262 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00012370.1

Sequence Viewer

Length: 453 bp
ATGGAGAAGGCAAAGAAGTGTCTGGAGGTGAGCGAGGAAGAGTCACGGTGTGTGTCTCGACTCCCCGTTCCATCTCACCCAGTCGGCTCCGGGTTGAGCTTCTACGAGGATTTCGCTCTCAAAGGCATCCGAGTCGACCGAGTCGAACCCGGTCTCGTCGTCTGTACCTTCAAGGTCCCTCCCCGCCTCACCGATAGAAGTGGGAAGTTGGCAAATGGTGCAATTGCAAATCTTGTTGATGAAGTTGGTGGTGCTGTAGTTCATGTTGAGGGTTTACCCTATGAGTGTTTCAGTGGGACATGTCCATTTGATGATTTAGAGATCAGCTCAAAGGTGTTGGGAAAAAAAGGAGGTTATTCTGGAACATTAGTGCTTATGAGAAATAAAGCAACTGGTGAGGTTATTGCTGAAGGTCGGCATTCCTTGTTCGGTAGACATCCTAGCAAACTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
4HBT

Protein Analysis

150

Amino Acids

16.13

Weight (kDa)

7.65

Isoelectric Point (pI)

39.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000478)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29590
fragaria_vesca FvH4_3g37930 FvH4_3g37930 FvH4_3g37970 FvH4_3g37990 FvH4_3g37990 FvH4_3g38000 FvH4_3g38010 FvH4_3g38050 FvH4_3g38060
malus_domestica MD03G1077300.v1.1 MD03G1077400.v1.1 MD03G1077500.v1.1 MD08G1031500.v1.1 MD11G1081500.v1.1 MD11G1081600.v1.1 MD11G1081700.v1.1 MD11G1081800.v1.1 MD11G1081900.v1.1
prunus_persica Prupe.6G061800_v2.0.a1 Prupe.6G061900_v2.0.a1 Prupe.6G062000_v2.0.a1 Prupe.6G062000_v2.0.a1 Prupe.6G062100_v2.0.a1 Prupe.6G062100_v2.0.a1 Prupe.6G062200_v2.0.a1 Prupe.6G062300_v2.0.a1
pyrus_communis pycom03g06110 pycom03g06120 pycom03g06130 pycom11g06960 pycom11g06970 pycom11g06980 pycom11g07020
rosa_chinensis RchiOBHm_Chr5g0068361 RchiOBHm_Chr5g0068381 RchiOBHm_Chr5g0068391 RchiOBHm_Chr5g0068401 RchiOBHm_Chr5g0068411 RchiOBHm_Chr5g0068441
rosa_laevigata RLG00000035969 RLG00000035971 RLG00000035972 RLG00000035973 RLG00000035974
rosa_multiflora Rmu_sc0001418.1_g000002 Rmu_sc0003450.1_g000002 Rmu_sc0003450.1_g000003 Rmu_sc0003450.1_g000004 Rmu_sc0003450.1_g000007 Rmu_sc0005087.1_g000001 Rmu_sc0006054.1_g000001
rosa_roxburghii Rroxscaffold_1G00012370 Rroxscaffold_1G00012380 Rroxscaffold_1G00012390 Rroxscaffold_1G00012400 Rroxscaffold_1G00012420 Rroxscaffold_1G00013110 Rroxscaffold_1G00013120 Rroxscaffold_1G00013130 Rroxscaffold_1G00013150 Rroxscaffold_1G00013160
rosa_rugosa Rorug05G0389200 Rorug05G0389400 Rorug05G0389500 Rorug05G0389600 Rorug05G0389600
rosa_samantha Rh5AG447900 Rh5AG448100 Rh5AG448200 Rh5AG448300 Rh5AG448400 Rh5BG465700 Rh5BG465900 Rh5BG466200 Rh5BG466300 Rh5BG466700 Rh5CG487500 Rh5CG487800 Rh5CG487900 Rh5CG488300 Rh5DG479500 Rh5DG479700 Rh5DG479800 Rh5DG480100
rosa_wichuraiana Rw5G041800 Rw5G041830 Rw5G041840 Rw5G041850 Rw5G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 135, 433
AciI CCGC 1 cut(s) 184
AcuI CTGAAG 1 cut(s) 429
AdeI CACNNNGTG 1 cut(s) 50
AfaI GTAC 1 cut(s) 166
AflIII ACRYGT 1 cut(s) 299
AgsI TTSAA 1 cut(s) 172
AluBI AGCT 2 cut(s) 99, 327
AluI AGCT 2 cut(s) 99, 327
Alw26I GTCTC 2 cut(s) 60, 158
AspS9I GGNCC 1 cut(s) 175
AsuC2I CCSGG 2 cut(s) 91, 150
AsuHPI GGTGA 4 cut(s) 40, 68, 181, 407
AvaII GGWCC 1 cut(s) 175
BccI CCATC 1 cut(s) 79
BcgI CGANNNNNNTGC 2 cut(s) 115, 149
BcnI CCSGG 2 cut(s) 91, 150
BcoDI GTCTC 2 cut(s) 60, 158
BfaI CTAG 1 cut(s) 441
BfmI CTRYAG 1 cut(s) 255
Bme1390I CCNGG 2 cut(s) 91, 150
Bme18I GGWCC 1 cut(s) 175
BmgT120I GGNCC 1 cut(s) 175
BmiI GGNNCC 2 cut(s) 88, 177
BmrFI CCNGG 2 cut(s) 91, 150
BmrI ACTGGG 1 cut(s) 74
BmsI GCATC 1 cut(s) 135
BmuI ACTGGG 1 cut(s) 74
BplI GAGNNNNNCTC 2 cut(s) 311, 343
BpmI CTGGAG 1 cut(s) 44
BpuMI CCSGG 2 cut(s) 91, 150
BsaI GGTCTC 1 cut(s) 158
Bse1I ACTGG 2 cut(s) 80, 397
BseGI GGATG 2 cut(s) 126, 436
BseNI ACTGG 2 cut(s) 80, 397
Bsh1285I CGRYCG 1 cut(s) 139
BsiEI CGRYCG 1 cut(s) 139
BsiSI CCGG 2 cut(s) 90, 150
BslFI GGGAC 2 cut(s) 161, 310
BsmAI GTCTC 2 cut(s) 60, 158
BsmFI GGGAC 2 cut(s) 161, 310
BsmI GAATGC 1 cut(s) 418
Bso31I GGTCTC 1 cut(s) 158
Bsp143I GATC 1 cut(s) 321
BspACI CCGC 1 cut(s) 184
BspLI GGNNCC 2 cut(s) 88, 177
BspTNI GGTCTC 1 cut(s) 158
BsrI ACTGG 2 cut(s) 80, 397
BssMI GATC 1 cut(s) 321
Bst4CI ACNGT 1 cut(s) 48
Bst6I CTCTTC 1 cut(s) 33
BstAPI GCANNNNNTGC 1 cut(s) 218
BstF5I GGATG 2 cut(s) 126, 436
BstKTI GATC 1 cut(s) 324
BstMAI GTCTC 2 cut(s) 60, 158
BstMBI GATC 1 cut(s) 321
BstMCI CGRYCG 1 cut(s) 139
BstMWI GCNNNNNNNGC 1 cut(s) 218
BstNSI RCATGY 1 cut(s) 303
BstSCI CCNGG 2 cut(s) 89, 148
BstSFI CTRYAG 1 cut(s) 255
BtsCI GGATG 2 cut(s) 126, 436
BtsIMutI CAGTG 1 cut(s) 298
Cfr13I GGNCC 1 cut(s) 175
Csp6I GTAC 1 cut(s) 165
CviAII CATG 2 cut(s) 263, 300
CviJI RGCY 3 cut(s) 87, 99, 327
CviKI_1 RGCY 3 cut(s) 87, 99, 327
CviQI GTAC 1 cut(s) 165
DpnI GATC 1 cut(s) 323
DpnII GATC 1 cut(s) 321
DraIII CACNNNGTG 1 cut(s) 50
Eam1104I CTCTTC 1 cut(s) 33
EarI CTCTTC 1 cut(s) 33
Eco31I GGTCTC 1 cut(s) 158
Eco47I GGWCC 1 cut(s) 175
Eco57I CTGAAG 1 cut(s) 429
EcoO109I RGGNCCY 1 cut(s) 175
FaeI CATG 2 cut(s) 266, 303
FaiI YATR 4 cut(s) 264, 282, 301, 377
FaqI GGGAC 2 cut(s) 161, 310
FatI CATG 2 cut(s) 262, 299
FauI CCCGC 1 cut(s) 191
FblI GTMKAC 2 cut(s) 135, 433
FokI GGATG 2 cut(s) 113, 423
FspBI CTAG 1 cut(s) 441
GsuI CTGGAG 1 cut(s) 44
HapII CCGG 2 cut(s) 90, 150
Hin1II CATG 2 cut(s) 266, 303
HincII GTYRAC 1 cut(s) 136
HindII GTYRAC 1 cut(s) 136
HinfI GANTC 4 cut(s) 41, 60, 132, 141
HpaII CCGG 2 cut(s) 90, 150
HphI GGTGA 4 cut(s) 40, 68, 181, 407
Hpy166II GTNNAC 3 cut(s) 136, 275, 434
Hpy188I TCNGA 1 cut(s) 131
Hpy188III TCNNGA 3 cut(s) 23, 57, 360
Hpy8I GTNNAC 3 cut(s) 136, 275, 434
Hpy99I CGWCG 1 cut(s) 161
HpyAV CCTTC 2 cut(s) 178, 404
HpyCH4III ACNGT 1 cut(s) 48
HpyCH4V TGCA 2 cut(s) 221, 227
HpyF10VI GCNNNNNNNGC 1 cut(s) 218
Hsp92II CATG 2 cut(s) 266, 303
Kzo9I GATC 1 cut(s) 321
LmnI GCTCC 1 cut(s) 92
LpnPI CCDG 6 cut(s) 8, 93, 103, 163, 345, 378
LweI GCATC 1 cut(s) 135
MaeI CTAG 1 cut(s) 441
MaeIII GTNAC 1 cut(s) 42
MalI GATC 1 cut(s) 323
MboI GATC 1 cut(s) 321
MboII GAAGA 1 cut(s) 50
MfeI CAATTG 1 cut(s) 222
MluCI AATT 1 cut(s) 222
MlyI GAGTC 4 cut(s) 50, 54, 141, 150
MnlI CCTC 8 cut(s) 19, 28, 100, 189, 197, 262, 344, 391
MspI CCGG 2 cut(s) 90, 150
MspR9I CCNGG 2 cut(s) 91, 150
MunI CAATTG 1 cut(s) 222
Mva1269I GAATGC 1 cut(s) 418
MwoI GCNNNNNNNGC 1 cut(s) 218
NciI CCSGG 2 cut(s) 91, 150
NdeII GATC 1 cut(s) 321
NlaIII CATG 2 cut(s) 266, 303
NlaIV GGNNCC 2 cut(s) 88, 177
NmuCI GTSAC 1 cut(s) 42
NspI RCATGY 1 cut(s) 303
PciI ACATGT 1 cut(s) 299
PcsI WCGNNNNNNNCGW 1 cut(s) 141
PctI GAATGC 1 cut(s) 418
PflFI GACNNNGTC 1 cut(s) 140
PleI GAGTC 4 cut(s) 49, 54, 140, 149
PpsI GAGTC 4 cut(s) 49, 54, 140, 149
PpuMI RGGWCCY 1 cut(s) 175
PscI ACATGT 1 cut(s) 299
Psp5II RGGWCCY 1 cut(s) 175
PspN4I GGNNCC 2 cut(s) 88, 177
PspPI GGNCC 1 cut(s) 175
PspPPI RGGWCCY 1 cut(s) 175
PsyI GACNNNGTC 1 cut(s) 140
RsaI GTAC 1 cut(s) 166
RsaNI GTAC 1 cut(s) 165
SalI GTCGAC 1 cut(s) 134
Sau3AI GATC 1 cut(s) 321
Sau96I GGNCC 1 cut(s) 175
SchI GAGTC 4 cut(s) 50, 54, 141, 150
ScrFI CCNGG 2 cut(s) 91, 150
SetI ASST 9 cut(s) 30, 101, 170, 177, 329, 336, 355, 402, 415
SfaNI GCATC 1 cut(s) 135
SfcI CTRYAG 1 cut(s) 255
SinI GGWCC 1 cut(s) 175
Sse9I AATT 1 cut(s) 222
SsiI CCGC 1 cut(s) 184
SspMI CTAG 1 cut(s) 441
StyD4I CCNGG 2 cut(s) 89, 148
TaaI ACNGT 1 cut(s) 48
TaqI TCGA 3 cut(s) 58, 135, 144
TaqII GACCGA 1 cut(s) 153
TasI AATT 1 cut(s) 222
TscAI CASTG 1 cut(s) 298
TseFI GTSAC 1 cut(s) 42
Tsp45I GTSAC 1 cut(s) 42
TspDTI ATGAA 2 cut(s) 251, 255
TspRI CASTG 1 cut(s) 298
Tth111I GACNNNGTC 1 cut(s) 140
VpaK11BI GGWCC 1 cut(s) 175
XceI RCATGY 1 cut(s) 303
XmiI GTMKAC 2 cut(s) 135, 433
XspI CTAG 1 cut(s) 441
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.