Prupe.6G062300_v2.0.a1

Acyl-coenzyme A thioesterase 13-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000478
Physical Location & Seq
Forward (+)
4312038 .. 4314576
2539 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G062300.1

Sequence Viewer

Length: 480 bp
ATGGAGAGGGCGAAGAAGTTTCTGGGGCTGAGTCAGGACGAGTCCGAGGCCGTGTCGCGACTCGCCGTTCCAGAACGGCAAGCGGGCGAAGGGAAGAGCTTCTACGACACTTTCGCTCTTGCTGGCAACCGAGTCGTCCGAGTCGAACCCGGACTCATCGTCTGTTCTTTCAAGGTCCCTCCCCGCCTCACTGATAGAACTGGGAAGTTGGCCAGTGGGGCAATTGCAAACCTGGTTGATGTTGTCGGTATTTCCGTAGATTTTGTTGAGGGTCTACCTATGAATGTTTCAGTGGATATGTCTATCTCCCATCTCTCAACTGCCAAGCTTGATGATGAGTTAGAGATCATCTCAAAAAGGTTAGGGCAAAGAGGAGGTTACACTGGAACGTTGGTACTTGTGAGAAACAAAGCAACTGGTGAGATTATTGCTGAAGGTAGACTTTCAATGTTTCGTACACAAGCTTCTAGCAAACTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
4HBT

Protein Analysis

160

Amino Acids

17.13

Weight (kDa)

8.79

Isoelectric Point (pI)

22.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000478)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29590
fragaria_vesca FvH4_3g37930 FvH4_3g37930 FvH4_3g37970 FvH4_3g37990 FvH4_3g37990 FvH4_3g38000 FvH4_3g38010 FvH4_3g38050 FvH4_3g38060
malus_domestica MD03G1077300.v1.1 MD03G1077400.v1.1 MD03G1077500.v1.1 MD08G1031500.v1.1 MD11G1081500.v1.1 MD11G1081600.v1.1 MD11G1081700.v1.1 MD11G1081800.v1.1 MD11G1081900.v1.1
prunus_persica Prupe.6G061800_v2.0.a1 Prupe.6G061900_v2.0.a1 Prupe.6G062000_v2.0.a1 Prupe.6G062000_v2.0.a1 Prupe.6G062100_v2.0.a1 Prupe.6G062100_v2.0.a1 Prupe.6G062200_v2.0.a1 Prupe.6G062300_v2.0.a1
pyrus_communis pycom03g06110 pycom03g06120 pycom03g06130 pycom11g06960 pycom11g06970 pycom11g06980 pycom11g07020
rosa_chinensis RchiOBHm_Chr5g0068361 RchiOBHm_Chr5g0068381 RchiOBHm_Chr5g0068391 RchiOBHm_Chr5g0068401 RchiOBHm_Chr5g0068411 RchiOBHm_Chr5g0068441
rosa_laevigata RLG00000035969 RLG00000035971 RLG00000035972 RLG00000035973 RLG00000035974
rosa_multiflora Rmu_sc0001418.1_g000002 Rmu_sc0003450.1_g000002 Rmu_sc0003450.1_g000003 Rmu_sc0003450.1_g000004 Rmu_sc0003450.1_g000007 Rmu_sc0005087.1_g000001 Rmu_sc0006054.1_g000001
rosa_roxburghii Rroxscaffold_1G00012370 Rroxscaffold_1G00012380 Rroxscaffold_1G00012390 Rroxscaffold_1G00012400 Rroxscaffold_1G00012420 Rroxscaffold_1G00013110 Rroxscaffold_1G00013120 Rroxscaffold_1G00013130 Rroxscaffold_1G00013150 Rroxscaffold_1G00013160
rosa_rugosa Rorug05G0389200 Rorug05G0389400 Rorug05G0389500 Rorug05G0389600 Rorug05G0389600
rosa_samantha Rh5AG447900 Rh5AG448100 Rh5AG448200 Rh5AG448300 Rh5AG448400 Rh5BG465700 Rh5BG465900 Rh5BG466200 Rh5BG466300 Rh5BG466700 Rh5CG487500 Rh5CG487800 Rh5CG487900 Rh5CG488300 Rh5DG479500 Rh5DG479700 Rh5DG479800 Rh5DG480100
rosa_wichuraiana Rw5G041800 Rw5G041830 Rw5G041840 Rw5G041850 Rw5G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 274, 439
AccII CGCG 1 cut(s) 58
AciI CCGC 2 cut(s) 83, 184
AclI AACGTT 1 cut(s) 389
AcoI YGGCCR 1 cut(s) 210
AcuI CTGAAG 1 cut(s) 453
AfaI GTAC 2 cut(s) 396, 457
AgsI TTSAA 2 cut(s) 172, 447
AhdI GACNNNNNGTC 1 cut(s) 158
AjnI CCWGG 1 cut(s) 231
AluBI AGCT 3 cut(s) 99, 328, 464
AluI AGCT 3 cut(s) 99, 328, 464
AoxI GGCC 2 cut(s) 48, 210
Asp700I GAANNNNTTC 1 cut(s) 98
AspS9I GGNCC 1 cut(s) 175
AsuC2I CCSGG 1 cut(s) 150
AsuHPI GGTGA 1 cut(s) 431
AvaII GGWCC 1 cut(s) 175
BalI TGGCCA 1 cut(s) 212
BarI GAAGNNNNNNTAC 4 cut(s) 86, 118, 448, 480
BccI CCATC 1 cut(s) 318
BceAI ACGGC 3 cut(s) 35, 50, 92
BcgI CGANNNNNNTGC 2 cut(s) 115, 149
BciT130I CCWGG 1 cut(s) 233
BcnI CCSGG 1 cut(s) 150
BfaI CTAG 1 cut(s) 468
BglI GCCNNNNNGGC 1 cut(s) 218
Bme1390I CCNGG 2 cut(s) 150, 233
Bme18I GGWCC 1 cut(s) 175
BmeRI GACNNNNNGTC 1 cut(s) 158
BmgT120I GGNCC 1 cut(s) 175
BmiI GGNNCC 1 cut(s) 177
BmrFI CCNGG 2 cut(s) 150, 233
BmrI ACTGGG 1 cut(s) 210
BmuI ACTGGG 1 cut(s) 210
BplI GAGNNNNNCTC 2 cut(s) 335, 367
BpuMI CCSGG 1 cut(s) 150
BsaJI CCNNGG 1 cut(s) 45
Bse1I ACTGG 4 cut(s) 205, 213, 388, 421
BseBI CCWGG 1 cut(s) 233
BseDI CCNNGG 1 cut(s) 45
BseMII CTCAG 1 cut(s) 20
BseNI ACTGG 4 cut(s) 205, 213, 388, 421
BseRI GAGGAG 1 cut(s) 387
Bsh1236I CGCG 1 cut(s) 58
BshFI GGCC 2 cut(s) 50, 212
BsiSI CCGG 1 cut(s) 150
BslFI GGGAC 1 cut(s) 161
BsmFI GGGAC 1 cut(s) 161
BsnI GGCC 2 cut(s) 50, 212
Bsp143I GATC 1 cut(s) 345
Bsp68I TCGCGA 1 cut(s) 58
BspACI CCGC 2 cut(s) 83, 184
BspANI GGCC 2 cut(s) 50, 212
BspCNI CTCAG 1 cut(s) 21
BspFNI CGCG 1 cut(s) 58
BspLI GGNNCC 1 cut(s) 177
BspQI GCTCTTC 1 cut(s) 89
BsrI ACTGG 4 cut(s) 205, 213, 388, 421
BssECI CCNNGG 1 cut(s) 45
BssMI GATC 1 cut(s) 345
Bst2UI CCWGG 1 cut(s) 233
Bst6I CTCTTC 1 cut(s) 89
BstC8I GCNNGC 3 cut(s) 81, 85, 124
BstDEI CTNAG 1 cut(s) 29
BstFNI CGCG 1 cut(s) 58
BstKTI GATC 1 cut(s) 348
BstMBI GATC 1 cut(s) 345
BstMWI GCNNNNNNNGC 1 cut(s) 218
BstNI CCWGG 1 cut(s) 233
BstSCI CCNGG 2 cut(s) 148, 231
BstUI CGCG 1 cut(s) 58
BsuRI GGCC 2 cut(s) 50, 212
BtsIMutI CAGTG 4 cut(s) 189, 220, 297, 381
BtuMI TCGCGA 1 cut(s) 58
Cac8I GCNNGC 3 cut(s) 81, 85, 124
Cfr13I GGNCC 1 cut(s) 175
CsiI ACCWGGT 1 cut(s) 231
Csp6I GTAC 2 cut(s) 395, 456
CviJI RGCY 6 cut(s) 28, 50, 99, 212, 328, 464
CviKI_1 RGCY 6 cut(s) 28, 50, 99, 212, 328, 464
CviQI GTAC 2 cut(s) 395, 456
DdeI CTNAG 1 cut(s) 29
DpnI GATC 1 cut(s) 347
DpnII GATC 1 cut(s) 345
DriI GACNNNNNGTC 1 cut(s) 158
EaeI YGGCCR 1 cut(s) 210
Eam1104I CTCTTC 1 cut(s) 89
Eam1105I GACNNNNNGTC 1 cut(s) 158
EarI CTCTTC 1 cut(s) 89
Eco47I GGWCC 1 cut(s) 175
Eco57I CTGAAG 1 cut(s) 453
EcoO109I RGGNCCY 1 cut(s) 175
EcoRII CCWGG 1 cut(s) 231
FaiI YATR 2 cut(s) 281, 299
FalI AAGNNNNNCTT 2 cut(s) 426, 458
FaqI GGGAC 1 cut(s) 161
FauI CCCGC 2 cut(s) 76, 191
FblI GTMKAC 2 cut(s) 274, 439
FspBI CTAG 1 cut(s) 468
HaeIII GGCC 2 cut(s) 50, 212
HapII CCGG 1 cut(s) 150
HindIII AAGCTT 2 cut(s) 326, 462
HinfI GANTC 6 cut(s) 31, 41, 60, 132, 141, 153
HpaII CCGG 1 cut(s) 150
HphI GGTGA 1 cut(s) 431
Hpy166II GTNNAC 3 cut(s) 275, 440, 458
Hpy188I TCNGA 3 cut(s) 46, 140, 479
Hpy188III TCNNGA 3 cut(s) 35, 57, 71
Hpy8I GTNNAC 3 cut(s) 275, 440, 458
HpyAV CCTTC 2 cut(s) 83, 428
HpyCH4IV ACGT 1 cut(s) 389
HpyCH4V TGCA 1 cut(s) 227
HpyF10VI GCNNNNNNNGC 1 cut(s) 218
HpyF3I CTNAG 1 cut(s) 29
HpySE526I ACGT 1 cut(s) 389
Kzo9I GATC 1 cut(s) 345
LguI GCTCTTC 1 cut(s) 89
MabI ACCWGGT 1 cut(s) 231
MaeI CTAG 1 cut(s) 468
MaeII ACGT 1 cut(s) 389
MaeIII GTNAC 1 cut(s) 377
MalI GATC 1 cut(s) 347
MboI GATC 1 cut(s) 345
MboII GAAGA 2 cut(s) 25, 106
MfeI CAATTG 1 cut(s) 222
MlsI TGGCCA 1 cut(s) 212
MluCI AATT 1 cut(s) 222
MluNI TGGCCA 1 cut(s) 212
MlyI GAGTC 6 cut(s) 40, 50, 54, 141, 147, 150
MnlI CCTC 6 cut(s) 40, 189, 197, 262, 365, 368
Mox20I TGGCCA 1 cut(s) 212
MroXI GAANNNNTTC 1 cut(s) 98
MscI TGGCCA 1 cut(s) 212
Msp20I TGGCCA 1 cut(s) 212
MspI CCGG 1 cut(s) 150
MspR9I CCNGG 2 cut(s) 150, 233
MunI CAATTG 1 cut(s) 222
MvaI CCWGG 1 cut(s) 233
MvnI CGCG 1 cut(s) 58
MwoI GCNNNNNNNGC 1 cut(s) 218
NciI CCSGG 1 cut(s) 150
NdeII GATC 1 cut(s) 345
NlaIV GGNNCC 1 cut(s) 177
NruI TCGCGA 1 cut(s) 58
PciSI GCTCTTC 1 cut(s) 89
PcsI WCGNNNNNNNCGW 2 cut(s) 141, 252
PdmI GAANNNNTTC 1 cut(s) 98
PleI GAGTC 6 cut(s) 39, 49, 54, 140, 147, 149
PpsI GAGTC 6 cut(s) 39, 49, 54, 140, 147, 149
PpuMI RGGWCCY 1 cut(s) 175
Psp1406I AACGTT 1 cut(s) 389
Psp5II RGGWCCY 1 cut(s) 175
Psp6I CCWGG 1 cut(s) 231
PspGI CCWGG 1 cut(s) 231
PspN4I GGNNCC 1 cut(s) 177
PspPI GGNCC 1 cut(s) 175
PspPPI RGGWCCY 1 cut(s) 175
RruI TCGCGA 1 cut(s) 58
RsaI GTAC 2 cut(s) 396, 457
RsaNI GTAC 2 cut(s) 395, 456
SapI GCTCTTC 1 cut(s) 89
Sau3AI GATC 1 cut(s) 345
Sau96I GGNCC 1 cut(s) 175
SchI GAGTC 6 cut(s) 40, 50, 54, 141, 147, 150
ScrFI CCNGG 2 cut(s) 150, 233
SexAI ACCWGGT 1 cut(s) 231
SinI GGWCC 1 cut(s) 175
Sse9I AATT 1 cut(s) 222
SsiI CCGC 2 cut(s) 83, 184
SspMI CTAG 1 cut(s) 468
StyD4I CCNGG 2 cut(s) 148, 231
TaiI ACGT 1 cut(s) 392
TaqI TCGA 1 cut(s) 144
TasI AATT 1 cut(s) 222
TscAI CASTG 4 cut(s) 196, 220, 297, 388
TspDTI ATGAA 1 cut(s) 296
TspGWI ACGGA 1 cut(s) 244
TspRI CASTG 4 cut(s) 196, 220, 297, 388
VpaK11BI GGWCC 1 cut(s) 175
XmiI GTMKAC 2 cut(s) 274, 439
XmnI GAANNNNTTC 1 cut(s) 98
XspI CTAG 1 cut(s) 468
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.