Rmu_sc0003450.1_g000002

Acyl-coenzyme A thioesterase 13-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003450.1
OG0000478
Physical Location & Seq
Forward (+)
1709 .. 3568
1860 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003450.1_g000002.1.cds

Sequence Viewer

Length: 630 bp
atggagaaggcaaagaagtgtctggaggtgagcaaggaagagtcacacaccgtgtctcgactccctgttccatctcacccagtcggctccgggttgagcttctacgaggatttcgctctcaaaggcatccgagtcgaccgagtcgaacccggtctcgtcgtctgtaccttcaaggtccctccccgcctcaccgatagaagtgggaagttggcaaatggagcaattgcaaatcttgtcgatgaagttggttatgctgtagttcacgttgagggtttacctatcagtgtttcagtggacatgtccgtttctgttatgtccactgccaagcttaatgatgatttagagatcagctcaaaggtgttggggaaaaaaggaggttattctggaacattagtgcttatgagaaataaagcaactggggaggttattgctgaaggtcggcattccttgttcggctgccttgaagtgatggaaaactccaagcagtacaagcttgtggttggccctgaccgttctgctaagatactggaaattacggacaagcttgtgatgatatactacccaatcgagtttggatcagattatgctgaagatttctctataattgttaatccgagttattgttgctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
4HBT

Protein Analysis

209

Amino Acids

22.73

Weight (kDa)

5.85

Isoelectric Point (pI)

34.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000478)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29590
fragaria_vesca FvH4_3g37930 FvH4_3g37930 FvH4_3g37970 FvH4_3g37990 FvH4_3g37990 FvH4_3g38000 FvH4_3g38010 FvH4_3g38050 FvH4_3g38060
malus_domestica MD03G1077300.v1.1 MD03G1077400.v1.1 MD03G1077500.v1.1 MD08G1031500.v1.1 MD11G1081500.v1.1 MD11G1081600.v1.1 MD11G1081700.v1.1 MD11G1081800.v1.1 MD11G1081900.v1.1
prunus_persica Prupe.6G061800_v2.0.a1 Prupe.6G061900_v2.0.a1 Prupe.6G062000_v2.0.a1 Prupe.6G062000_v2.0.a1 Prupe.6G062100_v2.0.a1 Prupe.6G062100_v2.0.a1 Prupe.6G062200_v2.0.a1 Prupe.6G062300_v2.0.a1
pyrus_communis pycom03g06110 pycom03g06120 pycom03g06130 pycom11g06960 pycom11g06970 pycom11g06980 pycom11g07020
rosa_chinensis RchiOBHm_Chr5g0068361 RchiOBHm_Chr5g0068381 RchiOBHm_Chr5g0068391 RchiOBHm_Chr5g0068401 RchiOBHm_Chr5g0068411 RchiOBHm_Chr5g0068441
rosa_laevigata RLG00000035969 RLG00000035971 RLG00000035972 RLG00000035973 RLG00000035974
rosa_multiflora Rmu_sc0001418.1_g000002 Rmu_sc0003450.1_g000002 Rmu_sc0003450.1_g000003 Rmu_sc0003450.1_g000004 Rmu_sc0003450.1_g000007 Rmu_sc0005087.1_g000001 Rmu_sc0006054.1_g000001
rosa_roxburghii Rroxscaffold_1G00012370 Rroxscaffold_1G00012380 Rroxscaffold_1G00012390 Rroxscaffold_1G00012400 Rroxscaffold_1G00012420 Rroxscaffold_1G00013110 Rroxscaffold_1G00013120 Rroxscaffold_1G00013130 Rroxscaffold_1G00013150 Rroxscaffold_1G00013160
rosa_rugosa Rorug05G0389200 Rorug05G0389400 Rorug05G0389500 Rorug05G0389600 Rorug05G0389600
rosa_samantha Rh5AG447900 Rh5AG448100 Rh5AG448200 Rh5AG448300 Rh5AG448400 Rh5BG465700 Rh5BG465900 Rh5BG466200 Rh5BG466300 Rh5BG466700 Rh5CG487500 Rh5CG487800 Rh5CG487900 Rh5CG488300 Rh5DG479500 Rh5DG479700 Rh5DG479800 Rh5DG480100
rosa_wichuraiana Rw5G041800 Rw5G041830 Rw5G041840 Rw5G041850 Rw5G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 135
AciI CCGC 1 cut(s) 184
AclWI GGATC 1 cut(s) 583
AcuI CTGAAG 2 cut(s) 453, 609
AdeI CACNNNGTG 1 cut(s) 52
AfaI GTAC 2 cut(s) 166, 488
AflIII ACRYGT 1 cut(s) 297
AgsI TTSAA 2 cut(s) 172, 464
AluBI AGCT 5 cut(s) 99, 328, 351, 493, 544
AluI AGCT 5 cut(s) 99, 328, 351, 493, 544
Alw26I GTCTC 2 cut(s) 60, 158
AlwI GGATC 1 cut(s) 583
AoxI GGCC 1 cut(s) 502
ApeKI GCWGC 1 cut(s) 456
AspS9I GGNCC 2 cut(s) 175, 503
AsuC2I CCSGG 2 cut(s) 91, 150
AsuHPI GGTGA 3 cut(s) 40, 68, 181
AvaII GGWCC 1 cut(s) 175
BbvI GCAGC 1 cut(s) 443
BccI CCATC 2 cut(s) 79, 463
BcgI CGANNNNNNTGC 2 cut(s) 115, 149
BcnI CCSGG 2 cut(s) 91, 150
BcoDI GTCTC 2 cut(s) 60, 158
BfaI CTAG 1 cut(s) 628
BfmI CTRYAG 1 cut(s) 255
BisI GCNGC 1 cut(s) 457
BlsI GCNGC 1 cut(s) 458
Bme1390I CCNGG 2 cut(s) 91, 150
Bme18I GGWCC 1 cut(s) 175
BmgT120I GGNCC 2 cut(s) 175, 503
BmiI GGNNCC 2 cut(s) 88, 177
BmrFI CCNGG 2 cut(s) 91, 150
BmrI ACTGGG 2 cut(s) 74, 426
BmsI GCATC 1 cut(s) 135
BmuI ACTGGG 2 cut(s) 74, 426
BplI GAGNNNNNCTC 2 cut(s) 335, 367
BpmI CTGGAG 1 cut(s) 44
BpuMI CCSGG 2 cut(s) 91, 150
BsaI GGTCTC 1 cut(s) 158
Bse1I ACTGG 3 cut(s) 80, 421, 531
BseGI GGATG 1 cut(s) 126
BseNI ACTGG 3 cut(s) 80, 421, 531
BseXI GCAGC 1 cut(s) 443
Bsh1285I CGRYCG 1 cut(s) 139
BshFI GGCC 1 cut(s) 504
BsiEI CGRYCG 1 cut(s) 139
BsiSI CCGG 2 cut(s) 90, 150
BslFI GGGAC 1 cut(s) 161
BsmAI GTCTC 2 cut(s) 60, 158
BsmFI GGGAC 1 cut(s) 161
BsmI GAATGC 1 cut(s) 442
BsnI GGCC 1 cut(s) 504
Bso31I GGTCTC 1 cut(s) 158
Bsp143I GATC 2 cut(s) 345, 575
BspACI CCGC 1 cut(s) 184
BspANI GGCC 1 cut(s) 504
BspLI GGNNCC 2 cut(s) 88, 177
BspPI GGATC 1 cut(s) 583
BspTNI GGTCTC 1 cut(s) 158
BsrI ACTGG 3 cut(s) 80, 421, 531
BssMI GATC 2 cut(s) 345, 575
Bst4CI ACNGT 2 cut(s) 52, 512
Bst6I CTCTTC 1 cut(s) 33
BstDEI CTNAG 1 cut(s) 519
BstF5I GGATG 1 cut(s) 126
BstKTI GATC 2 cut(s) 348, 578
BstMAI GTCTC 2 cut(s) 60, 158
BstMBI GATC 2 cut(s) 345, 575
BstMCI CGRYCG 1 cut(s) 139
BstMWI GCNNNNNNNGC 2 cut(s) 218, 490
BstNSI RCATGY 1 cut(s) 301
BstSCI CCNGG 2 cut(s) 89, 148
BstSFI CTRYAG 1 cut(s) 255
BstV1I GCAGC 1 cut(s) 443
BsuRI GGCC 1 cut(s) 504
BtsCI GGATG 1 cut(s) 126
BtsI GCAGTG 1 cut(s) 318
BtsIMutI CAGTG 3 cut(s) 289, 297, 318
Cfr13I GGNCC 2 cut(s) 175, 503
Csp6I GTAC 2 cut(s) 165, 487
CviAII CATG 1 cut(s) 298
CviJI RGCY 8 cut(s) 87, 99, 328, 351, 456, 493, 504, 544
CviKI_1 RGCY 8 cut(s) 87, 99, 328, 351, 456, 493, 504, 544
CviQI GTAC 2 cut(s) 165, 487
DdeI CTNAG 1 cut(s) 519
DpnI GATC 2 cut(s) 347, 577
DpnII GATC 2 cut(s) 345, 575
DraIII CACNNNGTG 1 cut(s) 52
Eam1104I CTCTTC 1 cut(s) 33
EarI CTCTTC 1 cut(s) 33
Eco31I GGTCTC 1 cut(s) 158
Eco47I GGWCC 1 cut(s) 175
Eco57I CTGAAG 2 cut(s) 453, 609
EcoO109I RGGNCCY 1 cut(s) 175
FaeI CATG 1 cut(s) 301
FaiI YATR 7 cut(s) 252, 299, 314, 401, 556, 585, 602
FaqI GGGAC 1 cut(s) 161
FatI CATG 1 cut(s) 297
FauI CCCGC 1 cut(s) 191
FblI GTMKAC 1 cut(s) 135
Fnu4HI GCNGC 1 cut(s) 457
FokI GGATG 1 cut(s) 113
Fsp4HI GCNGC 1 cut(s) 457
FspBI CTAG 1 cut(s) 628
GluI GCNGC 1 cut(s) 457
GsuI CTGGAG 1 cut(s) 44
HaeIII GGCC 1 cut(s) 504
HapII CCGG 2 cut(s) 90, 150
Hin1II CATG 1 cut(s) 301
HincII GTYRAC 1 cut(s) 136
HindII GTYRAC 1 cut(s) 136
HindIII AAGCTT 3 cut(s) 326, 491, 542
HinfI GANTC 4 cut(s) 41, 60, 132, 141
HpaII CCGG 2 cut(s) 90, 150
HphI GGTGA 3 cut(s) 40, 68, 181
Hpy166II GTNNAC 5 cut(s) 136, 262, 275, 295, 318
Hpy188I TCNGA 3 cut(s) 131, 580, 615
Hpy188III TCNNGA 3 cut(s) 23, 57, 384
Hpy8I GTNNAC 5 cut(s) 136, 262, 275, 295, 318
Hpy99I CGWCG 1 cut(s) 161
HpyAV CCTTC 2 cut(s) 178, 428
HpyCH4III ACNGT 2 cut(s) 52, 512
HpyCH4IV ACGT 1 cut(s) 264
HpyCH4V TGCA 1 cut(s) 227
HpyF10VI GCNNNNNNNGC 2 cut(s) 218, 490
HpyF3I CTNAG 1 cut(s) 519
HpySE526I ACGT 1 cut(s) 264
Hsp92II CATG 1 cut(s) 301
Kzo9I GATC 2 cut(s) 345, 575
LmnI GCTCC 2 cut(s) 92, 218
LpnPI CCDG 9 cut(s) 8, 78, 93, 103, 163, 369, 402, 512, 519
Lsp1109I GCAGC 1 cut(s) 443
LweI GCATC 1 cut(s) 135
MaeI CTAG 1 cut(s) 628
MaeII ACGT 1 cut(s) 264
MaeIII GTNAC 1 cut(s) 42
MalI GATC 2 cut(s) 347, 577
MboI GATC 2 cut(s) 345, 575
MboII GAAGA 2 cut(s) 50, 602
MfeI CAATTG 1 cut(s) 222
MluCI AATT 3 cut(s) 222, 531, 603
MlyI GAGTC 4 cut(s) 50, 54, 141, 150
MnlI CCTC 7 cut(s) 19, 100, 189, 197, 262, 368, 415
MseI TTAA 2 cut(s) 330, 609
MspI CCGG 2 cut(s) 90, 150
MspR9I CCNGG 2 cut(s) 91, 150
MunI CAATTG 1 cut(s) 222
Mva1269I GAATGC 1 cut(s) 442
MwoI GCNNNNNNNGC 2 cut(s) 218, 490
NciI CCSGG 2 cut(s) 91, 150
NdeII GATC 2 cut(s) 345, 575
NlaIII CATG 1 cut(s) 301
NlaIV GGNNCC 2 cut(s) 88, 177
NmuCI GTSAC 1 cut(s) 42
NspI RCATGY 1 cut(s) 301
PciI ACATGT 1 cut(s) 297
PcsI WCGNNNNNNNCGW 1 cut(s) 141
PctI GAATGC 1 cut(s) 442
PflFI GACNNNGTC 1 cut(s) 140
PkrI GCNGC 1 cut(s) 458
PleI GAGTC 4 cut(s) 49, 54, 140, 149
PpsI GAGTC 4 cut(s) 49, 54, 140, 149
PpuMI RGGWCCY 1 cut(s) 175
PscI ACATGT 1 cut(s) 297
Psp5II RGGWCCY 1 cut(s) 175
PspN4I GGNNCC 2 cut(s) 88, 177
PspPI GGNCC 2 cut(s) 175, 503
PspPPI RGGWCCY 1 cut(s) 175
PsyI GACNNNGTC 1 cut(s) 140
RsaI GTAC 2 cut(s) 166, 488
RsaNI GTAC 2 cut(s) 165, 487
SalI GTCGAC 1 cut(s) 134
SaqAI TTAA 2 cut(s) 330, 609
SatI GCNGC 1 cut(s) 457
Sau3AI GATC 2 cut(s) 345, 575
Sau96I GGNCC 2 cut(s) 175, 503
SchI GAGTC 4 cut(s) 50, 54, 141, 150
ScrFI CCNGG 2 cut(s) 91, 150
SfaNI GCATC 1 cut(s) 135
SfcI CTRYAG 1 cut(s) 255
SinI GGWCC 1 cut(s) 175
Sse9I AATT 3 cut(s) 222, 531, 603
SsiI CCGC 1 cut(s) 184
SspMI CTAG 1 cut(s) 628
StyD4I CCNGG 2 cut(s) 89, 148
TaaI ACNGT 2 cut(s) 52, 512
TaiI ACGT 1 cut(s) 267
TaqI TCGA 5 cut(s) 58, 135, 144, 237, 567
TaqII GACCGA 1 cut(s) 153
TasI AATT 3 cut(s) 222, 531, 603
TatI WGTACW 1 cut(s) 486
Tru1I TTAA 2 cut(s) 330, 609
Tru9I TTAA 2 cut(s) 330, 609
TscAI CASTG 3 cut(s) 289, 297, 325
TseFI GTSAC 1 cut(s) 42
TseI GCWGC 1 cut(s) 456
Tsp45I GTSAC 1 cut(s) 42
TspDTI ATGAA 1 cut(s) 255
TspGWI ACGGA 2 cut(s) 292, 551
TspRI CASTG 3 cut(s) 289, 297, 325
Tth111I GACNNNGTC 1 cut(s) 140
VpaK11BI GGWCC 1 cut(s) 175
XceI RCATGY 1 cut(s) 301
XmiI GTMKAC 1 cut(s) 135
XspI CTAG 1 cut(s) 628
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.