Rh5BG466700

Acyl-coenzyme A thioesterase 13-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000478
Physical Location & Seq
Reverse (-)
74343793 .. 74344839
1047 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG466700.1

Sequence Viewer

Length: 483 bp
ATGGCTCCGATTGGAGGAGAAGACGAGGACGTGAATATGAAAAAGAAGGCGAAAGAGTCTCTGGAGCTGAGCCAGGACGAGTCAGAGGCCGTGTCGCGAATCGTCGTACCGGCTCAGCGACCCGGCGAGTCGAGCATATACGATATGTTCTCTCTTAGAGGCATCCGAGTCGACCGAGCCCTACCCGGATTCGTCGTCTGTACTCTTAAGGGGGGACAAAGAGTCAAAGACCACAGTGAATTGTCCATGACAACTAAAAGAAAGCTCACTAGTGCATTCATAGCTGGAAATTTGGCCCAAGGTGCAATTGCAAACCTTGTTGATGTAGTTGGTGCTTCTGTAGCATATATTCACGGTCTCCCTATGAATGTTTCCGTAGACATATCTGTCTCCTTCATGTCAAAGGCAAAGCTTGATGTAAGCAACCCTTCTTCGACATATACAGTGATCCATAGAAACGCTGAATTGTTGATACACGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
4HBT

Protein Analysis

160

Amino Acids

17.23

Weight (kDa)

6.91

Isoelectric Point (pI)

35.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000478)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29590
fragaria_vesca FvH4_3g37930 FvH4_3g37930 FvH4_3g37970 FvH4_3g37990 FvH4_3g37990 FvH4_3g38000 FvH4_3g38010 FvH4_3g38050 FvH4_3g38060
malus_domestica MD03G1077300.v1.1 MD03G1077400.v1.1 MD03G1077500.v1.1 MD08G1031500.v1.1 MD11G1081500.v1.1 MD11G1081600.v1.1 MD11G1081700.v1.1 MD11G1081800.v1.1 MD11G1081900.v1.1
prunus_persica Prupe.6G061800_v2.0.a1 Prupe.6G061900_v2.0.a1 Prupe.6G062000_v2.0.a1 Prupe.6G062000_v2.0.a1 Prupe.6G062100_v2.0.a1 Prupe.6G062100_v2.0.a1 Prupe.6G062200_v2.0.a1 Prupe.6G062300_v2.0.a1
pyrus_communis pycom03g06110 pycom03g06120 pycom03g06130 pycom11g06960 pycom11g06970 pycom11g06980 pycom11g07020
rosa_chinensis RchiOBHm_Chr5g0068361 RchiOBHm_Chr5g0068381 RchiOBHm_Chr5g0068391 RchiOBHm_Chr5g0068401 RchiOBHm_Chr5g0068411 RchiOBHm_Chr5g0068441
rosa_laevigata RLG00000035969 RLG00000035971 RLG00000035972 RLG00000035973 RLG00000035974
rosa_multiflora Rmu_sc0001418.1_g000002 Rmu_sc0003450.1_g000002 Rmu_sc0003450.1_g000003 Rmu_sc0003450.1_g000004 Rmu_sc0003450.1_g000007 Rmu_sc0005087.1_g000001 Rmu_sc0006054.1_g000001
rosa_roxburghii Rroxscaffold_1G00012370 Rroxscaffold_1G00012380 Rroxscaffold_1G00012390 Rroxscaffold_1G00012400 Rroxscaffold_1G00012420 Rroxscaffold_1G00013110 Rroxscaffold_1G00013120 Rroxscaffold_1G00013130 Rroxscaffold_1G00013150 Rroxscaffold_1G00013160
rosa_rugosa Rorug05G0389200 Rorug05G0389400 Rorug05G0389500 Rorug05G0389600 Rorug05G0389600
rosa_samantha Rh5AG447900 Rh5AG448100 Rh5AG448200 Rh5AG448300 Rh5AG448400 Rh5BG465700 Rh5BG465900 Rh5BG466200 Rh5BG466300 Rh5BG466700 Rh5CG487500 Rh5CG487800 Rh5CG487900 Rh5CG488300 Rh5DG479500 Rh5DG479700 Rh5DG479800 Rh5DG480100
rosa_wichuraiana Rw5G041800 Rw5G041830 Rw5G041840 Rw5G041850 Rw5G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 386
AccI GTMKAC 2 cut(s) 171, 378
AccII CGCG 1 cut(s) 97
AclWI GGATC 1 cut(s) 442
AcsI RAATTY 1 cut(s) 289
AfaI GTAC 2 cut(s) 108, 202
AfiI CCNNNNNNNGG 1 cut(s) 14
AflII CTTAAG 1 cut(s) 206
AflIII ACRYGT 1 cut(s) 475
AhdI GACNNNNNGTC 1 cut(s) 221
AhlI ACTAGT 1 cut(s) 269
AjiI CACGTC 2 cut(s) 31, 478
AjnI CCWGG 1 cut(s) 72
AluBI AGCT 4 cut(s) 67, 265, 284, 412
AluI AGCT 4 cut(s) 67, 265, 284, 412
Alw26I GTCTC 3 cut(s) 63, 362, 394
AlwI GGATC 1 cut(s) 442
AoxI GGCC 2 cut(s) 87, 294
ApoI RAATTY 1 cut(s) 289
AspS9I GGNCC 1 cut(s) 295
AsuC2I CCSGG 2 cut(s) 123, 186
BanII GRGCYC 1 cut(s) 181
BbsI GAAGAC 1 cut(s) 27
BceAI ACGGC 1 cut(s) 74
BcgI CGANNNNNNTGC 2 cut(s) 151, 185
BciT130I CCWGG 1 cut(s) 74
BcnI CCSGG 2 cut(s) 123, 186
BcoDI GTCTC 3 cut(s) 63, 362, 394
BcuI ACTAGT 1 cut(s) 269
BfaI CTAG 1 cut(s) 270
BfmI CTRYAG 1 cut(s) 339
BfrI CTTAAG 1 cut(s) 206
BlpI GCTNAGC 2 cut(s) 68, 114
Bme1390I CCNGG 3 cut(s) 74, 123, 186
BmeRI GACNNNNNGTC 1 cut(s) 221
BmgBI CACGTC 2 cut(s) 31, 478
BmgT120I GGNCC 1 cut(s) 295
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 3 cut(s) 74, 123, 186
BmsI GCATC 1 cut(s) 171
BpiI GAAGAC 1 cut(s) 27
BpmI CTGGAG 1 cut(s) 83
Bpu1102I GCTNAGC 2 cut(s) 68, 114
BpuMI CCSGG 2 cut(s) 123, 186
BsaI GGTCTC 1 cut(s) 362
BsaJI CCNNGG 1 cut(s) 298
Bsc4I CCNNNNNNNGG 1 cut(s) 14
Bse118I RCCGGY 1 cut(s) 109
BseBI CCWGG 1 cut(s) 74
BseDI CCNNGG 1 cut(s) 298
BseGI GGATG 1 cut(s) 162
BseLI CCNNNNNNNGG 1 cut(s) 14
BseMII CTCAG 2 cut(s) 59, 128
BseRI GAGGAG 1 cut(s) 30
Bsh1236I CGCG 1 cut(s) 97
Bsh1285I CGRYCG 1 cut(s) 175
BshFI GGCC 2 cut(s) 89, 296
BsiEI CGRYCG 1 cut(s) 175
BsiSI CCGG 3 cut(s) 110, 123, 186
BslFI GGGAC 1 cut(s) 228
BslI CCNNNNNNNGG 1 cut(s) 14
BsmAI GTCTC 3 cut(s) 63, 362, 394
BsmFI GGGAC 1 cut(s) 228
BsmI GAATGC 1 cut(s) 275
BsnI GGCC 2 cut(s) 89, 296
Bso31I GGTCTC 1 cut(s) 362
Bsp1286I GDGCHC 1 cut(s) 181
Bsp143I GATC 1 cut(s) 447
Bsp1720I GCTNAGC 2 cut(s) 68, 114
Bsp68I TCGCGA 1 cut(s) 97
BspANI GGCC 2 cut(s) 89, 296
BspCNI CTCAG 2 cut(s) 60, 127
BspFNI CGCG 1 cut(s) 97
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 1 cut(s) 442
BspTI CTTAAG 1 cut(s) 206
BspTNI GGTCTC 1 cut(s) 362
BsrFI RCCGGY 1 cut(s) 109
BssAI RCCGGY 1 cut(s) 109
BssECI CCNNGG 1 cut(s) 298
BssMI GATC 1 cut(s) 447
BssT1I CCWWGG 1 cut(s) 298
Bst2UI CCWGG 1 cut(s) 74
Bst4CI ACNGT 3 cut(s) 236, 356, 445
BstAFI CTTAAG 1 cut(s) 206
BstDEI CTNAG 3 cut(s) 68, 114, 155
BstF5I GGATG 1 cut(s) 162
BstFNI CGCG 1 cut(s) 97
BstKTI GATC 1 cut(s) 450
BstMAI GTCTC 3 cut(s) 63, 362, 394
BstMBI GATC 1 cut(s) 447
BstMCI CGRYCG 1 cut(s) 175
BstMWI GCNNNNNNNGC 4 cut(s) 132, 281, 302, 341
BstNI CCWGG 1 cut(s) 74
BstSCI CCNGG 3 cut(s) 72, 121, 184
BstSFI CTRYAG 1 cut(s) 339
BstUI CGCG 1 cut(s) 97
BstV2I GAAGAC 1 cut(s) 27
BsuRI GGCC 2 cut(s) 89, 296
BtrI CACGTC 2 cut(s) 31, 478
BtsCI GGATG 1 cut(s) 162
BtsIMutI CAGTG 2 cut(s) 241, 450
BtuMI TCGCGA 1 cut(s) 97
Cfr10I RCCGGY 1 cut(s) 109
Cfr13I GGNCC 1 cut(s) 295
Csp6I GTAC 2 cut(s) 107, 201
CviAII CATG 2 cut(s) 247, 397
CviQI GTAC 2 cut(s) 107, 201
DdeI CTNAG 3 cut(s) 68, 114, 155
DpnI GATC 1 cut(s) 449
DpnII GATC 1 cut(s) 447
DrdI GACNNNNNNGTC 1 cut(s) 386
DriI GACNNNNNGTC 1 cut(s) 221
DseDI GACNNNNNNGTC 1 cut(s) 386
Eam1105I GACNNNNNGTC 1 cut(s) 221
Eco130I CCWWGG 1 cut(s) 298
Eco24I GRGCYC 1 cut(s) 181
Eco31I GGTCTC 1 cut(s) 362
EcoRII CCWGG 1 cut(s) 72
EcoT14I CCWWGG 1 cut(s) 298
EcoT38I GRGCYC 1 cut(s) 181
ErhI CCWWGG 1 cut(s) 298
FaeI CATG 2 cut(s) 250, 400
FalI AAGNNNNNCTT 2 cut(s) 412, 444
FaqI GGGAC 1 cut(s) 228
FatI CATG 2 cut(s) 246, 396
FblI GTMKAC 2 cut(s) 171, 378
FokI GGATG 1 cut(s) 149
FriOI GRGCYC 1 cut(s) 181
FspBI CTAG 1 cut(s) 270
GsuI CTGGAG 1 cut(s) 83
HaeIII GGCC 2 cut(s) 89, 296
HapII CCGG 3 cut(s) 110, 123, 186
Hin1II CATG 2 cut(s) 250, 400
HincII GTYRAC 1 cut(s) 172
HindII GTYRAC 1 cut(s) 172
HindIII AAGCTT 1 cut(s) 410
HinfI GANTC 7 cut(s) 56, 80, 99, 128, 168, 189, 222
HpaII CCGG 3 cut(s) 110, 123, 186
Hpy166II GTNNAC 2 cut(s) 172, 379
Hpy188I TCNGA 3 cut(s) 9, 85, 167
Hpy188III TCNNGA 2 cut(s) 62, 96
Hpy8I GTNNAC 2 cut(s) 172, 379
Hpy99I CGWCG 2 cut(s) 107, 197
HpyAV CCTTC 3 cut(s) 40, 403, 438
HpyCH4III ACNGT 3 cut(s) 236, 356, 445
HpyCH4IV ACGT 2 cut(s) 30, 477
HpyCH4V TGCA 3 cut(s) 275, 305, 311
HpyF10VI GCNNNNNNNGC 4 cut(s) 132, 281, 302, 341
HpyF3I CTNAG 3 cut(s) 68, 114, 155
HpySE526I ACGT 2 cut(s) 30, 477
Hsp92II CATG 2 cut(s) 250, 400
Kzo9I GATC 1 cut(s) 447
LmnI GCTCC 2 cut(s) 10, 64
LpnPI CCDG 7 cut(s) 47, 59, 86, 123, 136, 199, 270
LweI GCATC 1 cut(s) 171
MaeI CTAG 1 cut(s) 270
MaeII ACGT 2 cut(s) 30, 477
MalI GATC 1 cut(s) 449
MboI GATC 1 cut(s) 447
MboII GAAGA 2 cut(s) 32, 423
MfeI CAATTG 1 cut(s) 306
MhlI GDGCHC 1 cut(s) 181
MluCI AATT 4 cut(s) 239, 289, 306, 464
MlyI GAGTC 5 cut(s) 65, 89, 137, 177, 231
MnlI CCTC 4 cut(s) 8, 19, 79, 152
MseI TTAA 1 cut(s) 207
MspCI CTTAAG 1 cut(s) 206
MspI CCGG 3 cut(s) 110, 123, 186
MspR9I CCNGG 3 cut(s) 74, 123, 186
MunI CAATTG 1 cut(s) 306
Mva1269I GAATGC 1 cut(s) 275
MvaI CCWGG 1 cut(s) 74
MvnI CGCG 1 cut(s) 97
MwoI GCNNNNNNNGC 4 cut(s) 132, 281, 302, 341
NciI CCSGG 2 cut(s) 123, 186
NdeII GATC 1 cut(s) 447
NlaIII CATG 2 cut(s) 250, 400
NlaIV GGNNCC 1 cut(s) 6
NruI TCGCGA 1 cut(s) 97
PctI GAATGC 1 cut(s) 275
PfeI GAWTC 2 cut(s) 99, 189
PleI GAGTC 5 cut(s) 64, 88, 136, 176, 230
PpsI GAGTC 5 cut(s) 64, 88, 136, 176, 230
Psp6I CCWGG 1 cut(s) 72
PspGI CCWGG 1 cut(s) 72
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 295
RruI TCGCGA 1 cut(s) 97
RsaI GTAC 2 cut(s) 108, 202
RsaNI GTAC 2 cut(s) 107, 201
SalI GTCGAC 1 cut(s) 170
SaqAI TTAA 1 cut(s) 207
Sau3AI GATC 1 cut(s) 447
Sau96I GGNCC 1 cut(s) 295
SchI GAGTC 5 cut(s) 65, 89, 137, 177, 231
ScrFI CCNGG 3 cut(s) 74, 123, 186
SduI GDGCHC 1 cut(s) 181
SetI ASST 8 cut(s) 33, 69, 267, 286, 304, 318, 414, 480
SfaNI GCATC 1 cut(s) 171
SfcI CTRYAG 1 cut(s) 339
SmlI CTYRAG 1 cut(s) 206
SmoI CTYRAG 1 cut(s) 206
SpeI ACTAGT 1 cut(s) 269
Sse9I AATT 4 cut(s) 239, 289, 306, 464
SspMI CTAG 1 cut(s) 270
StyD4I CCNGG 3 cut(s) 72, 121, 184
StyI CCWWGG 1 cut(s) 298
TaaI ACNGT 3 cut(s) 236, 356, 445
TaiI ACGT 2 cut(s) 33, 480
TaqI TCGA 3 cut(s) 131, 171, 434
TaqII GACCGA 1 cut(s) 189
TasI AATT 4 cut(s) 239, 289, 306, 464
TatI WGTACW 1 cut(s) 200
TfiI GAWTC 2 cut(s) 99, 189
Tru1I TTAA 1 cut(s) 207
Tru9I TTAA 1 cut(s) 207
TscAI CASTG 2 cut(s) 241, 450
TspDTI ATGAA 4 cut(s) 53, 268, 380, 385
TspGWI ACGGA 1 cut(s) 364
TspRI CASTG 2 cut(s) 241, 450
Vha464I CTTAAG 1 cut(s) 206
XapI RAATTY 1 cut(s) 289
XmiI GTMKAC 2 cut(s) 171, 378
XspI CTAG 1 cut(s) 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.