Rorug05G0389200

Acyl-coenzyme A thioesterase 13-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000478
Physical Location & Seq
Reverse (-)
52964288 .. 52965110
823 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0389200.1

Sequence Viewer

Length: 738 bp
ATGTTGAGATTCAAGAAACTATACATCTTACACCCTTTTCTTTTGATACTCAATTTCTTGTTGACAACTTCGATTTCTCAAAATGCTTCAACCACCATTTCTGATGAACCTAACTTTCACACACCATTGTCCCCAATAAACCAGATGATCATATGCAAATCTCAAAAGCCCTACCACAAATGTGAAACTCTGAACATCACCCACTCTTCTTGTTCTTCTTCACTCAACTATGCCTCCCCAAACCTTCTCTCAGCTGGTTTTACATCTCGATCCAACTCACTTTTACTTTACAACTGCTCAAACTCAAAACTTCCATCATCACCACTTTCCCACACTTTGACATGCTTACATACATCTGGAGCTTCTTCAAAGATTCAAGAACTTGAAGGGGTTTCTTCGACTTCTTGTTTACTAGCTGATGATCTCACAAAGCTTGACATGGAATTTAATCCAAGTGATTTGAATTGCTCATGTTATGGCAGAGTCTACAGAAAATCTTCAGGTGAGTACTATGAAGAACATGACTTCGGGACTAGAATTGCTTTTGAAGTGCCTGACCACATACCCAATATCTGCAATGAGTGTCAAAAGGCTAATGGCAATTGCAGTGAAGCACTGAGATGCATATGTCACCCAAAAGAGTGTAAAAACAAGGTCATTTCAAAGGGTGGATCCATTAATTCTTTTGGTTATAATATCCTTGTTTCTTTGCTTCCTCTTTTAGTAGTGAATCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
4HBT

Protein Analysis

245

Amino Acids

27.07

Weight (kDa)

7.51

Isoelectric Point (pI)

47.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000478)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29590
fragaria_vesca FvH4_3g37930 FvH4_3g37930 FvH4_3g37970 FvH4_3g37990 FvH4_3g37990 FvH4_3g38000 FvH4_3g38010 FvH4_3g38050 FvH4_3g38060
malus_domestica MD03G1077300.v1.1 MD03G1077400.v1.1 MD03G1077500.v1.1 MD08G1031500.v1.1 MD11G1081500.v1.1 MD11G1081600.v1.1 MD11G1081700.v1.1 MD11G1081800.v1.1 MD11G1081900.v1.1
prunus_persica Prupe.6G061800_v2.0.a1 Prupe.6G061900_v2.0.a1 Prupe.6G062000_v2.0.a1 Prupe.6G062000_v2.0.a1 Prupe.6G062100_v2.0.a1 Prupe.6G062100_v2.0.a1 Prupe.6G062200_v2.0.a1 Prupe.6G062300_v2.0.a1
pyrus_communis pycom03g06110 pycom03g06120 pycom03g06130 pycom11g06960 pycom11g06970 pycom11g06980 pycom11g07020
rosa_chinensis RchiOBHm_Chr5g0068361 RchiOBHm_Chr5g0068381 RchiOBHm_Chr5g0068391 RchiOBHm_Chr5g0068401 RchiOBHm_Chr5g0068411 RchiOBHm_Chr5g0068441
rosa_laevigata RLG00000035969 RLG00000035971 RLG00000035972 RLG00000035973 RLG00000035974
rosa_multiflora Rmu_sc0001418.1_g000002 Rmu_sc0003450.1_g000002 Rmu_sc0003450.1_g000003 Rmu_sc0003450.1_g000004 Rmu_sc0003450.1_g000007 Rmu_sc0005087.1_g000001 Rmu_sc0006054.1_g000001
rosa_roxburghii Rroxscaffold_1G00012370 Rroxscaffold_1G00012380 Rroxscaffold_1G00012390 Rroxscaffold_1G00012400 Rroxscaffold_1G00012420 Rroxscaffold_1G00013110 Rroxscaffold_1G00013120 Rroxscaffold_1G00013130 Rroxscaffold_1G00013150 Rroxscaffold_1G00013160
rosa_rugosa Rorug05G0389200 Rorug05G0389400 Rorug05G0389500 Rorug05G0389600 Rorug05G0389600
rosa_samantha Rh5AG447900 Rh5AG448100 Rh5AG448200 Rh5AG448300 Rh5AG448400 Rh5BG465700 Rh5BG465900 Rh5BG466200 Rh5BG466300 Rh5BG466700 Rh5CG487500 Rh5CG487800 Rh5CG487900 Rh5CG488300 Rh5DG479500 Rh5DG479700 Rh5DG479800 Rh5DG480100
rosa_wichuraiana Rw5G041800 Rw5G041830 Rw5G041840 Rw5G041850 Rw5G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 693
AccI GTMKAC 1 cut(s) 486
AclWI GGATC 3 cut(s) 264, 666, 679
AcsI RAATTY 1 cut(s) 443
AcuI CTGAAG 1 cut(s) 483
AfaI GTAC 1 cut(s) 509
AgsI TTSAA 8 cut(s) 13, 90, 369, 377, 386, 463, 548, 663
AleI CACNNNNGTG 1 cut(s) 180
AluBI AGCT 4 cut(s) 254, 362, 416, 433
AluI AGCT 4 cut(s) 254, 362, 416, 433
AlwI GGATC 3 cut(s) 264, 666, 679
ApoI RAATTY 1 cut(s) 443
AseI ATTAAT 1 cut(s) 678
Asp700I GAANNNNTTC 1 cut(s) 496
AsuHPI GGTGA 4 cut(s) 190, 312, 515, 623
BamHI GGATCC 1 cut(s) 671
BccI CCATC 1 cut(s) 322
BclI TGATCA 1 cut(s) 147
BfaI CTAG 2 cut(s) 413, 534
BfmI CTRYAG 1 cut(s) 487
BmcAI AGTACT 1 cut(s) 509
BmiI GGNNCC 1 cut(s) 673
BmsI GCATC 1 cut(s) 611
BpmI CTGGAG 1 cut(s) 378
BsaXI ACNNNNNCTCC 2 cut(s) 218, 248
Bse3DI GCAATG 1 cut(s) 583
BseMI GCAATG 1 cut(s) 583
BseMII CTCAG 2 cut(s) 264, 608
BslFI GGGAC 2 cut(s) 115, 544
BsmFI GGGAC 2 cut(s) 115, 544
Bsp143I GATC 4 cut(s) 147, 269, 421, 671
BspCNI CTCAG 2 cut(s) 263, 609
BspLI GGNNCC 1 cut(s) 673
BspPI GGATC 3 cut(s) 264, 666, 679
BsrDI GCAATG 1 cut(s) 583
BssMI GATC 4 cut(s) 147, 269, 421, 671
Bst6I CTCTTC 1 cut(s) 211
BstDEI CTNAG 2 cut(s) 250, 617
BstKTI GATC 4 cut(s) 150, 272, 424, 674
BstMBI GATC 4 cut(s) 147, 269, 421, 671
BstNSI RCATGY 1 cut(s) 345
BstSFI CTRYAG 1 cut(s) 487
BstX2I RGATCY 1 cut(s) 671
BstYI RGATCY 1 cut(s) 671
BtsI GCAGTG 1 cut(s) 613
BtsIMutI CAGTG 2 cut(s) 613, 614
Csp6I GTAC 1 cut(s) 508
CspCI CAANNNNNGTGG 2 cut(s) 191, 226
CviAII CATG 4 cut(s) 342, 439, 471, 521
CviJI RGCY 6 cut(s) 169, 254, 362, 416, 433, 593
CviKI_1 RGCY 6 cut(s) 169, 254, 362, 416, 433, 593
CviQI GTAC 1 cut(s) 508
DdeI CTNAG 2 cut(s) 250, 617
DpnI GATC 4 cut(s) 149, 271, 423, 673
DpnII GATC 4 cut(s) 147, 269, 421, 671
Eam1104I CTCTTC 1 cut(s) 211
EarI CTCTTC 1 cut(s) 211
Eco57I CTGAAG 1 cut(s) 483
EcoT22I ATGCAT 1 cut(s) 626
FaeI CATG 4 cut(s) 345, 442, 474, 524
FaqI GGGAC 2 cut(s) 115, 544
FatI CATG 4 cut(s) 341, 438, 470, 520
FauNDI CATATG 2 cut(s) 152, 626
FbaI TGATCA 1 cut(s) 147
FblI GTMKAC 1 cut(s) 486
FspBI CTAG 2 cut(s) 413, 534
GsuI CTGGAG 1 cut(s) 378
Hin1II CATG 4 cut(s) 345, 442, 474, 524
HincII GTYRAC 1 cut(s) 63
HindII GTYRAC 1 cut(s) 63
HindIII AAGCTT 1 cut(s) 431
HinfI GANTC 4 cut(s) 9, 373, 483, 730
HphI GGTGA 4 cut(s) 190, 312, 515, 623
Hpy166II GTNNAC 3 cut(s) 63, 410, 487
Hpy188I TCNGA 2 cut(s) 103, 192
Hpy188III TCNNGA 5 cut(s) 13, 267, 357, 377, 529
Hpy8I GTNNAC 3 cut(s) 63, 410, 487
HpyAV CCTTC 2 cut(s) 254, 380
HpyCH4V TGCA 4 cut(s) 156, 576, 606, 624
HpyF3I CTNAG 2 cut(s) 250, 617
Hsp92II CATG 4 cut(s) 345, 442, 474, 524
Ksp22I TGATCA 1 cut(s) 147
Kzo9I GATC 4 cut(s) 147, 269, 421, 671
LmnI GCTCC 1 cut(s) 359
LpnPI CCDG 5 cut(s) 155, 240, 342, 486, 567
LweI GCATC 1 cut(s) 611
MaeI CTAG 2 cut(s) 413, 534
MaeIII GTNAC 1 cut(s) 629
MalI GATC 4 cut(s) 149, 271, 423, 673
MboI GATC 4 cut(s) 147, 269, 421, 671
MboII GAAGA 7 cut(s) 198, 207, 210, 357, 387, 489, 527
MfeI CAATTG 1 cut(s) 601
MflI RGATCY 1 cut(s) 671
MluCI AATT 6 cut(s) 52, 443, 463, 537, 601, 679
MlyI GAGTC 1 cut(s) 492
MmeI TCCRAC 1 cut(s) 297
MnlI CCTC 2 cut(s) 244, 726
Mph1103I ATGCAT 1 cut(s) 626
MroXI GAANNNNTTC 1 cut(s) 496
MseI TTAA 2 cut(s) 447, 678
MslI CAYNNNNRTG 2 cut(s) 180, 619
MspA1I CMGCKG 1 cut(s) 254
MunI CAATTG 1 cut(s) 601
NdeI CATATG 2 cut(s) 152, 626
NdeII GATC 4 cut(s) 147, 269, 421, 671
NlaIII CATG 4 cut(s) 345, 442, 474, 524
NlaIV GGNNCC 1 cut(s) 673
NmuCI GTSAC 1 cut(s) 629
NsiI ATGCAT 1 cut(s) 626
NspI RCATGY 1 cut(s) 345
OliI CACNNNNGTG 1 cut(s) 180
PdmI GAANNNNTTC 1 cut(s) 496
PfeI GAWTC 3 cut(s) 9, 373, 730
PleI GAGTC 1 cut(s) 491
PpsI GAGTC 1 cut(s) 491
PshBI ATTAAT 1 cut(s) 678
PsiI TTATAA 1 cut(s) 693
PspN4I GGNNCC 1 cut(s) 673
PsuI RGATCY 1 cut(s) 671
PvuII CAGCTG 1 cut(s) 254
RsaI GTAC 1 cut(s) 509
RsaNI GTAC 1 cut(s) 508
RseI CAYNNNNRTG 2 cut(s) 180, 619
SaqAI TTAA 2 cut(s) 447, 678
Sau3AI GATC 4 cut(s) 147, 269, 421, 671
ScaI AGTACT 1 cut(s) 509
SchI GAGTC 1 cut(s) 492
SetI ASST 8 cut(s) 112, 246, 256, 364, 418, 435, 505, 657
SfaNI GCATC 1 cut(s) 611
SfcI CTRYAG 1 cut(s) 487
SmiMI CAYNNNNRTG 2 cut(s) 180, 619
Sse9I AATT 6 cut(s) 52, 443, 463, 537, 601, 679
SspMI CTAG 2 cut(s) 413, 534
TaqI TCGA 3 cut(s) 71, 268, 398
TasI AATT 6 cut(s) 52, 443, 463, 537, 601, 679
TatI WGTACW 1 cut(s) 507
TfiI GAWTC 3 cut(s) 9, 373, 730
Tru1I TTAA 2 cut(s) 447, 678
Tru9I TTAA 2 cut(s) 447, 678
TscAI CASTG 2 cut(s) 613, 621
TseFI GTSAC 1 cut(s) 629
Tsp45I GTSAC 1 cut(s) 629
TspDTI ATGAA 2 cut(s) 120, 528
TspRI CASTG 2 cut(s) 613, 621
VspI ATTAAT 1 cut(s) 678
XapI RAATTY 1 cut(s) 443
XceI RCATGY 1 cut(s) 345
XmiI GTMKAC 1 cut(s) 486
XmnI GAANNNNTTC 1 cut(s) 496
XspI CTAG 2 cut(s) 413, 534
ZrmI AGTACT 1 cut(s) 509
Zsp2I ATGCAT 1 cut(s) 626
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.