Rroxscaffold_1G00013160

Acyl-coenzyme A thioesterase 13-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000478
Physical Location & Seq
Forward (+)
16200765 .. 16202396
1632 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00013160.1

Sequence Viewer

Length: 516 bp
ATGCCCTTAGGAGTGAGTGAGTCGATCAGGGACGGATCCCACAATATTCAGATGGCCAAGGAGTACCTGAATCTGACCGACCACGACTCAGAGGCCGTATCGCAACTCGACATTGCAGCTCAACGAGTCGGAGTCGGGGTCGGGTTCTACGAGGTCTTCGCTCTTCAAGGCATCCGAGTCGAACCCGGACTCGTCGTTTGTTCTTTCAAGGTCCCTCCCCGCCTCACCGACAGAGCTGGAAATTTTGCCACTGGTGCAATTGCAAACCTTGTTGATGTAGTTGGTAATTCTACAGTTTATCGTCTCGGTCGCCCTATGAATGTTTCAATAGACATGTCCATCTCGTATATGTCAAAGGCAAAGATCGATGATGAATTAGAGATCACCTCAAAGAGGCTAGGACAAAGAGGACGTTACTTTGGAACAATAGTGGTGCTGAAAAACAAAGCAACTGGGGAGATTATTGCTGAAGGTCGACATTCATTGTTTCGTTCAAATTTTGTTCCCAAACTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
4HBT

Protein Analysis

171

Amino Acids

18.69

Weight (kDa)

8.73

Isoelectric Point (pI)

33.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000478)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29590
fragaria_vesca FvH4_3g37930 FvH4_3g37930 FvH4_3g37970 FvH4_3g37990 FvH4_3g37990 FvH4_3g38000 FvH4_3g38010 FvH4_3g38050 FvH4_3g38060
malus_domestica MD03G1077300.v1.1 MD03G1077400.v1.1 MD03G1077500.v1.1 MD08G1031500.v1.1 MD11G1081500.v1.1 MD11G1081600.v1.1 MD11G1081700.v1.1 MD11G1081800.v1.1 MD11G1081900.v1.1
prunus_persica Prupe.6G061800_v2.0.a1 Prupe.6G061900_v2.0.a1 Prupe.6G062000_v2.0.a1 Prupe.6G062000_v2.0.a1 Prupe.6G062100_v2.0.a1 Prupe.6G062100_v2.0.a1 Prupe.6G062200_v2.0.a1 Prupe.6G062300_v2.0.a1
pyrus_communis pycom03g06110 pycom03g06120 pycom03g06130 pycom11g06960 pycom11g06970 pycom11g06980 pycom11g07020
rosa_chinensis RchiOBHm_Chr5g0068361 RchiOBHm_Chr5g0068381 RchiOBHm_Chr5g0068391 RchiOBHm_Chr5g0068401 RchiOBHm_Chr5g0068411 RchiOBHm_Chr5g0068441
rosa_laevigata RLG00000035969 RLG00000035971 RLG00000035972 RLG00000035973 RLG00000035974
rosa_multiflora Rmu_sc0001418.1_g000002 Rmu_sc0003450.1_g000002 Rmu_sc0003450.1_g000003 Rmu_sc0003450.1_g000004 Rmu_sc0003450.1_g000007 Rmu_sc0005087.1_g000001 Rmu_sc0006054.1_g000001
rosa_roxburghii Rroxscaffold_1G00012370 Rroxscaffold_1G00012380 Rroxscaffold_1G00012390 Rroxscaffold_1G00012400 Rroxscaffold_1G00012420 Rroxscaffold_1G00013110 Rroxscaffold_1G00013120 Rroxscaffold_1G00013130 Rroxscaffold_1G00013150 Rroxscaffold_1G00013160
rosa_rugosa Rorug05G0389200 Rorug05G0389400 Rorug05G0389500 Rorug05G0389600 Rorug05G0389600
rosa_samantha Rh5AG447900 Rh5AG448100 Rh5AG448200 Rh5AG448300 Rh5AG448400 Rh5BG465700 Rh5BG465900 Rh5BG466200 Rh5BG466300 Rh5BG466700 Rh5CG487500 Rh5CG487800 Rh5CG487900 Rh5CG488300 Rh5DG479500 Rh5DG479700 Rh5DG479800 Rh5DG480100
rosa_wichuraiana Rw5G041800 Rw5G041830 Rw5G041840 Rw5G041850 Rw5G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 475
AciI CCGC 1 cut(s) 220
AclWI GGATC 2 cut(s) 30, 43
AcoI YGGCCR 1 cut(s) 54
AcsI RAATTY 2 cut(s) 241, 496
AcuI CTGAAG 1 cut(s) 489
AfaI GTAC 1 cut(s) 65
AfiI CCNNNNNNNGG 1 cut(s) 393
AflIII ACRYGT 1 cut(s) 333
AgsI TTSAA 4 cut(s) 167, 208, 327, 495
AluBI AGCT 2 cut(s) 119, 236
AluI AGCT 2 cut(s) 119, 236
Alw26I GTCTC 1 cut(s) 308
AlwI GGATC 2 cut(s) 30, 43
AoxI GGCC 2 cut(s) 54, 93
ApeKI GCWGC 1 cut(s) 116
ApoI RAATTY 2 cut(s) 241, 496
ArsI GACNNNNNNTTYG 2 cut(s) 180, 212
AspS9I GGNCC 1 cut(s) 211
AsuC2I CCSGG 1 cut(s) 186
AsuHPI GGTGA 2 cut(s) 217, 376
AvaII GGWCC 1 cut(s) 211
AxyI CCTNAGG 1 cut(s) 7
BalI TGGCCA 1 cut(s) 56
BamHI GGATCC 1 cut(s) 35
BbsI GAAGAC 1 cut(s) 148
BbvI GCAGC 1 cut(s) 128
BccI CCATC 2 cut(s) 46, 347
BceAI ACGGC 1 cut(s) 80
BcgI CGANNNNNNTGC 2 cut(s) 160, 194
BcnI CCSGG 1 cut(s) 186
BcoDI GTCTC 1 cut(s) 308
BfaI CTAG 1 cut(s) 398
BfmI CTRYAG 1 cut(s) 291
BisI GCNGC 1 cut(s) 117
BlsI GCNGC 1 cut(s) 118
Bme1390I CCNGG 1 cut(s) 186
Bme18I GGWCC 1 cut(s) 211
BmgT120I GGNCC 1 cut(s) 211
BmiI GGNNCC 2 cut(s) 37, 213
BmrFI CCNGG 1 cut(s) 186
BmrI ACTGGG 1 cut(s) 462
BmsI GCATC 1 cut(s) 180
BmuI ACTGGG 1 cut(s) 462
BpiI GAAGAC 1 cut(s) 148
BplI GAGNNNNNCTC 2 cut(s) 371, 403
BpuMI CCSGG 1 cut(s) 186
Bsa29I ATCGAT 1 cut(s) 366
BsaJI CCNNGG 1 cut(s) 57
BsaXI ACNNNNNCTCC 2 cut(s) 123, 153
Bsc4I CCNNNNNNNGG 1 cut(s) 393
Bse1I ACTGG 2 cut(s) 256, 457
Bse21I CCTNAGG 1 cut(s) 7
Bse3DI GCAATG 1 cut(s) 111
BseCI ATCGAT 1 cut(s) 366
BseDI CCNNGG 1 cut(s) 57
BseGI GGATG 1 cut(s) 171
BseLI CCNNNNNNNGG 1 cut(s) 393
BseMI GCAATG 1 cut(s) 111
BseMII CTCAG 1 cut(s) 102
BseNI ACTGG 2 cut(s) 256, 457
BseXI GCAGC 1 cut(s) 128
Bsh1285I CGRYCG 1 cut(s) 310
BshFI GGCC 2 cut(s) 56, 95
BshVI ATCGAT 1 cut(s) 366
BsiEI CGRYCG 1 cut(s) 310
BsiSI CCGG 1 cut(s) 186
BslFI GGGAC 2 cut(s) 44, 197
BslI CCNNNNNNNGG 1 cut(s) 393
BsmAI GTCTC 1 cut(s) 308
BsmBI CGTCTC 1 cut(s) 308
BsmFI GGGAC 2 cut(s) 44, 197
BsnI GGCC 2 cut(s) 56, 95
Bsp143I GATC 4 cut(s) 24, 35, 363, 381
BspACI CCGC 1 cut(s) 220
BspANI GGCC 2 cut(s) 56, 95
BspCNI CTCAG 1 cut(s) 101
BspDI ATCGAT 1 cut(s) 366
BspLI GGNNCC 2 cut(s) 37, 213
BspPI GGATC 2 cut(s) 30, 43
BspQI GCTCTTC 1 cut(s) 168
BsrDI GCAATG 1 cut(s) 111
BsrI ACTGG 2 cut(s) 256, 457
BssECI CCNNGG 1 cut(s) 57
BssMI GATC 4 cut(s) 24, 35, 363, 381
BssT1I CCWWGG 1 cut(s) 57
Bst4CI ACNGT 1 cut(s) 295
Bst6I CTCTTC 1 cut(s) 168
BstDEI CTNAG 2 cut(s) 7, 88
BstENI CCTNNNNNAGG 1 cut(s) 391
BstF5I GGATG 1 cut(s) 171
BstKTI GATC 4 cut(s) 27, 38, 366, 384
BstMAI GTCTC 1 cut(s) 308
BstMBI GATC 4 cut(s) 24, 35, 363, 381
BstMCI CGRYCG 1 cut(s) 310
BstMWI GCNNNNNNNGC 1 cut(s) 254
BstNSI RCATGY 1 cut(s) 337
BstSCI CCNGG 1 cut(s) 184
BstSFI CTRYAG 1 cut(s) 291
BstV1I GCAGC 1 cut(s) 128
BstV2I GAAGAC 1 cut(s) 148
BstX2I RGATCY 1 cut(s) 35
BstYI RGATCY 1 cut(s) 35
Bsu15I ATCGAT 1 cut(s) 366
Bsu36I CCTNAGG 1 cut(s) 7
BsuRI GGCC 2 cut(s) 56, 95
BsuTUI ATCGAT 1 cut(s) 366
BtsCI GGATG 1 cut(s) 171
BtsIMutI CAGTG 1 cut(s) 249
Cfr13I GGNCC 1 cut(s) 211
ClaI ATCGAT 1 cut(s) 366
Csp6I GTAC 1 cut(s) 64
CviAII CATG 1 cut(s) 334
CviJI RGCY 5 cut(s) 56, 95, 119, 236, 397
CviKI_1 RGCY 5 cut(s) 56, 95, 119, 236, 397
CviQI GTAC 1 cut(s) 64
DdeI CTNAG 2 cut(s) 7, 88
DpnI GATC 4 cut(s) 26, 37, 365, 383
DpnII GATC 4 cut(s) 24, 35, 363, 381
EaeI YGGCCR 1 cut(s) 54
Eam1104I CTCTTC 1 cut(s) 168
EarI CTCTTC 1 cut(s) 168
Eco130I CCWWGG 1 cut(s) 57
Eco47I GGWCC 1 cut(s) 211
Eco57I CTGAAG 1 cut(s) 489
Eco81I CCTNAGG 1 cut(s) 7
EcoNI CCTNNNNNAGG 1 cut(s) 391
EcoO109I RGGNCCY 1 cut(s) 211
EcoT14I CCWWGG 1 cut(s) 57
ErhI CCWWGG 1 cut(s) 57
Esp3I CGTCTC 1 cut(s) 308
FaeI CATG 1 cut(s) 337
FaiI YATR 4 cut(s) 317, 335, 348, 350
FaqI GGGAC 2 cut(s) 44, 197
FatI CATG 1 cut(s) 333
FauI CCCGC 1 cut(s) 227
FblI GTMKAC 1 cut(s) 475
Fnu4HI GCNGC 1 cut(s) 117
FokI GGATG 1 cut(s) 158
Fsp4HI GCNGC 1 cut(s) 117
FspBI CTAG 1 cut(s) 398
GluI GCNGC 1 cut(s) 117
HaeIII GGCC 2 cut(s) 56, 95
HapII CCGG 1 cut(s) 186
Hin1II CATG 1 cut(s) 337
HincII GTYRAC 1 cut(s) 476
HindII GTYRAC 1 cut(s) 476
HinfI GANTC 7 cut(s) 20, 70, 86, 126, 132, 177, 189
HpaII CCGG 1 cut(s) 186
HphI GGTGA 2 cut(s) 217, 376
Hpy166II GTNNAC 1 cut(s) 476
Hpy188I TCNGA 6 cut(s) 51, 75, 91, 131, 176, 515
Hpy8I GTNNAC 1 cut(s) 476
Hpy99I CGWCG 1 cut(s) 197
HpyAV CCTTC 1 cut(s) 464
HpyCH4III ACNGT 1 cut(s) 295
HpyCH4IV ACGT 1 cut(s) 412
HpyCH4V TGCA 3 cut(s) 116, 257, 263
HpyF10VI GCNNNNNNNGC 1 cut(s) 254
HpyF3I CTNAG 2 cut(s) 7, 88
HpySE526I ACGT 1 cut(s) 412
Hsp92II CATG 1 cut(s) 337
Kzo9I GATC 4 cut(s) 24, 35, 363, 381
LguI GCTCTTC 1 cut(s) 168
LpnPI CCDG 6 cut(s) 13, 80, 199, 222, 237, 438
Lsp1109I GCAGC 1 cut(s) 128
LweI GCATC 1 cut(s) 180
MaeI CTAG 1 cut(s) 398
MaeII ACGT 1 cut(s) 412
MaeIII GTNAC 1 cut(s) 413
MalI GATC 4 cut(s) 26, 37, 365, 383
MboI GATC 4 cut(s) 24, 35, 363, 381
MboII GAAGA 2 cut(s) 148, 155
MfeI CAATTG 1 cut(s) 258
MflI RGATCY 1 cut(s) 35
MlsI TGGCCA 1 cut(s) 56
MluCI AATT 5 cut(s) 241, 258, 286, 374, 496
MluNI TGGCCA 1 cut(s) 56
MlyI GAGTC 6 cut(s) 29, 80, 135, 141, 183, 186
MmeI TCCRAC 1 cut(s) 109
MnlI CCTC 7 cut(s) 85, 145, 225, 233, 387, 397, 401
Mox20I TGGCCA 1 cut(s) 56
MscI TGGCCA 1 cut(s) 56
Msp20I TGGCCA 1 cut(s) 56
MspI CCGG 1 cut(s) 186
MspR9I CCNGG 1 cut(s) 186
MunI CAATTG 1 cut(s) 258
MwoI GCNNNNNNNGC 1 cut(s) 254
NciI CCSGG 1 cut(s) 186
NdeII GATC 4 cut(s) 24, 35, 363, 381
NlaIII CATG 1 cut(s) 337
NlaIV GGNNCC 2 cut(s) 37, 213
NspI RCATGY 1 cut(s) 337
PciI ACATGT 1 cut(s) 333
PciSI GCTCTTC 1 cut(s) 168
PcsI WCGNNNNNNNCGW 1 cut(s) 147
PfeI GAWTC 1 cut(s) 70
PkrI GCNGC 1 cut(s) 118
PleI GAGTC 6 cut(s) 28, 80, 134, 140, 183, 185
PpsI GAGTC 6 cut(s) 28, 80, 134, 140, 183, 185
PpuMI RGGWCCY 1 cut(s) 211
PscI ACATGT 1 cut(s) 333
Psp5II RGGWCCY 1 cut(s) 211
PspN4I GGNNCC 2 cut(s) 37, 213
PspPI GGNCC 1 cut(s) 211
PspPPI RGGWCCY 1 cut(s) 211
PsuI RGATCY 1 cut(s) 35
RsaI GTAC 1 cut(s) 65
RsaNI GTAC 1 cut(s) 64
SalI GTCGAC 1 cut(s) 474
SapI GCTCTTC 1 cut(s) 168
SatI GCNGC 1 cut(s) 117
Sau3AI GATC 4 cut(s) 24, 35, 363, 381
Sau96I GGNCC 1 cut(s) 211
SchI GAGTC 6 cut(s) 29, 80, 135, 141, 183, 186
ScrFI CCNGG 1 cut(s) 186
SetI ASST 9 cut(s) 69, 121, 156, 213, 238, 270, 389, 415, 475
SfaNI GCATC 1 cut(s) 180
SfcI CTRYAG 1 cut(s) 291
SinI GGWCC 1 cut(s) 211
Sse9I AATT 5 cut(s) 241, 258, 286, 374, 496
SsiI CCGC 1 cut(s) 220
SspI AATATT 1 cut(s) 46
SspMI CTAG 1 cut(s) 398
StyD4I CCNGG 1 cut(s) 184
StyI CCWWGG 1 cut(s) 57
TaaI ACNGT 1 cut(s) 295
TaiI ACGT 1 cut(s) 415
TaqI TCGA 5 cut(s) 23, 108, 180, 366, 475
TaqII GACCGA 2 cut(s) 92, 296
TasI AATT 5 cut(s) 241, 258, 286, 374, 496
TfiI GAWTC 1 cut(s) 70
TscAI CASTG 1 cut(s) 256
TseI GCWGC 1 cut(s) 116
TspDTI ATGAA 3 cut(s) 332, 387, 471
TspGWI ACGGA 1 cut(s) 48
TspRI CASTG 1 cut(s) 256
VpaK11BI GGWCC 1 cut(s) 211
XagI CCTNNNNNAGG 1 cut(s) 391
XapI RAATTY 2 cut(s) 241, 496
XceI RCATGY 1 cut(s) 337
XmiI GTMKAC 1 cut(s) 475
XspI CTAG 1 cut(s) 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.