MD11G1081500.v1.1

Acyl-coenzyme A thioesterase 13-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0000478
Physical Location & Seq
Forward (+)
6946213 .. 6948158
1946 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1081500.v1.1.491

Sequence Viewer

Length: 477 bp
ATGGAGAAGGCGAAGAAATCCTTGGAACTGACCCACGACGAGTCAGAGGCCGCGTCGCGACTCACCGTTACACCTCACCAAGCCGGCGCCGGGCCGAGCTTCTACGAGTATTACGCTCTTCGCGGCATCCGAGTCGACCGAGTCGAACCTGGACTCGTCGTCTGTTCTTTCAAGGTCCCTCCCCGCCTCACCGATAGAAGTGGAAGGTTGGCTAATGGTGCAATTGCAAACCTGGTCGATGAAGTGGGTGGCGCCGTTGTTCATGTTGAGGGTCTTCCTATGAACGTTTCAGTGGACATGTCCATCTCGTTTATGTCCACTCCCAAGCTTGATGATGAGTTAGAGATCACGTCACGGGTGTTAGGACAAAGAGGGGGTTATTCAGGAACGATAGTCCTTATGAGAAACAAAGCAACTGGTGAGGTTATTGCTGAAGGTCGGCATTCGTTGTTTGGTAGGCATGCTAGCAAACTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
4HBT

Protein Analysis

159

Amino Acids

17.05

Weight (kDa)

6.97

Isoelectric Point (pI)

26.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
4HBT PF03061 68 - 121 6.2e-07 Thioesterase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000478)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29590
fragaria_vesca FvH4_3g37930 FvH4_3g37930 FvH4_3g37970 FvH4_3g37990 FvH4_3g37990 FvH4_3g38000 FvH4_3g38010 FvH4_3g38050 FvH4_3g38060
malus_domestica MD03G1077300.v1.1 MD03G1077400.v1.1 MD03G1077500.v1.1 MD08G1031500.v1.1 MD11G1081500.v1.1 MD11G1081600.v1.1 MD11G1081700.v1.1 MD11G1081800.v1.1 MD11G1081900.v1.1
prunus_persica Prupe.6G061800_v2.0.a1 Prupe.6G061900_v2.0.a1 Prupe.6G062000_v2.0.a1 Prupe.6G062000_v2.0.a1 Prupe.6G062100_v2.0.a1 Prupe.6G062100_v2.0.a1 Prupe.6G062200_v2.0.a1 Prupe.6G062300_v2.0.a1
pyrus_communis pycom03g06110 pycom03g06120 pycom03g06130 pycom11g06960 pycom11g06970 pycom11g06980 pycom11g07020
rosa_chinensis RchiOBHm_Chr5g0068361 RchiOBHm_Chr5g0068381 RchiOBHm_Chr5g0068391 RchiOBHm_Chr5g0068401 RchiOBHm_Chr5g0068411 RchiOBHm_Chr5g0068441
rosa_laevigata RLG00000035969 RLG00000035971 RLG00000035972 RLG00000035973 RLG00000035974
rosa_multiflora Rmu_sc0001418.1_g000002 Rmu_sc0003450.1_g000002 Rmu_sc0003450.1_g000003 Rmu_sc0003450.1_g000004 Rmu_sc0003450.1_g000007 Rmu_sc0005087.1_g000001 Rmu_sc0006054.1_g000001
rosa_roxburghii Rroxscaffold_1G00012370 Rroxscaffold_1G00012380 Rroxscaffold_1G00012390 Rroxscaffold_1G00012400 Rroxscaffold_1G00012420 Rroxscaffold_1G00013110 Rroxscaffold_1G00013120 Rroxscaffold_1G00013130 Rroxscaffold_1G00013150 Rroxscaffold_1G00013160
rosa_rugosa Rorug05G0389200 Rorug05G0389400 Rorug05G0389500 Rorug05G0389600 Rorug05G0389600
rosa_samantha Rh5AG447900 Rh5AG448100 Rh5AG448200 Rh5AG448300 Rh5AG448400 Rh5BG465700 Rh5BG465900 Rh5BG466200 Rh5BG466300 Rh5BG466700 Rh5CG487500 Rh5CG487800 Rh5CG487900 Rh5CG488300 Rh5DG479500 Rh5DG479700 Rh5DG479800 Rh5DG480100
rosa_wichuraiana Rw5G041800 Rw5G041830 Rw5G041840 Rw5G041850 Rw5G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 86, 251
AccI GTMKAC 1 cut(s) 135
AccII CGCG 3 cut(s) 53, 58, 123
AciI CCGC 3 cut(s) 51, 123, 184
AclI AACGTT 1 cut(s) 285
AcuI CTGAAG 1 cut(s) 453
AcyI GRCGYC 2 cut(s) 87, 252
AfiI CCNNNNNNNGG 1 cut(s) 90
AflIII ACRYGT 1 cut(s) 297
AgsI TTSAA 1 cut(s) 172
AhdI GACNNNNNGTC 1 cut(s) 158
AjiI CACGTC 1 cut(s) 351
AjnI CCWGG 2 cut(s) 148, 231
AjuI GAANNNNNNNTTGG 1 cut(s) 37
AluBI AGCT 2 cut(s) 99, 328
AluI AGCT 2 cut(s) 99, 328
AoxI GGCC 2 cut(s) 48, 92
AspLEI GCGC 2 cut(s) 89, 254
AspS9I GGNCC 2 cut(s) 92, 175
AsuC2I CCSGG 1 cut(s) 91
AsuHPI GGTGA 4 cut(s) 55, 68, 181, 431
AsuNHI GCTAGC 1 cut(s) 464
AvaII GGWCC 1 cut(s) 175
BanI GGYRCC 2 cut(s) 86, 251
BbsI GAAGAC 1 cut(s) 266
BccI CCATC 1 cut(s) 311
BceAI ACGGC 1 cut(s) 239
BcgI CGANNNNNNTGC 2 cut(s) 115, 149
BciT130I CCWGG 2 cut(s) 150, 233
BcnI CCSGG 1 cut(s) 91
BfaI CTAG 1 cut(s) 465
BfoI RGCGCY 2 cut(s) 90, 255
BisI GCNGC 2 cut(s) 51, 124
BlsI GCNGC 2 cut(s) 52, 125
Bme1390I CCNGG 3 cut(s) 91, 150, 233
Bme18I GGWCC 1 cut(s) 175
BmeRI GACNNNNNGTC 1 cut(s) 158
BmgBI CACGTC 1 cut(s) 351
BmgT120I GGNCC 2 cut(s) 92, 175
BmiI GGNNCC 3 cut(s) 88, 177, 253
BmrFI CCNGG 3 cut(s) 91, 150, 233
BmsI GCATC 1 cut(s) 135
BmtI GCTAGC 1 cut(s) 468
BpiI GAAGAC 1 cut(s) 266
BpuMI CCSGG 1 cut(s) 91
BsaHI GRCGYC 2 cut(s) 87, 252
BsaJI CCNNGG 1 cut(s) 21
Bsc4I CCNNNNNNNGG 1 cut(s) 90
Bse118I RCCGGY 1 cut(s) 83
Bse1I ACTGG 1 cut(s) 421
BseBI CCWGG 2 cut(s) 150, 233
BseDI CCNNGG 1 cut(s) 21
BseGI GGATG 1 cut(s) 126
BseLI CCNNNNNNNGG 1 cut(s) 90
BseNI ACTGG 1 cut(s) 421
Bsh1236I CGCG 3 cut(s) 53, 58, 123
Bsh1285I CGRYCG 1 cut(s) 139
BshFI GGCC 2 cut(s) 50, 94
BshNI GGYRCC 2 cut(s) 86, 251
BsiEI CGRYCG 1 cut(s) 139
BsiSI CCGG 2 cut(s) 84, 90
BslFI GGGAC 1 cut(s) 161
BslI CCNNNNNNNGG 1 cut(s) 90
BsmFI GGGAC 1 cut(s) 161
BsmI GAATGC 1 cut(s) 442
BsnI GGCC 2 cut(s) 50, 94
Bsp143I GATC 1 cut(s) 345
Bsp68I TCGCGA 1 cut(s) 58
BspACI CCGC 3 cut(s) 51, 123, 184
BspANI GGCC 2 cut(s) 50, 94
BspFNI CGCG 3 cut(s) 53, 58, 123
BspLI GGNNCC 3 cut(s) 88, 177, 253
BspOI GCTAGC 1 cut(s) 468
BspQI GCTCTTC 1 cut(s) 123
BspT107I GGYRCC 2 cut(s) 86, 251
BsrFI RCCGGY 1 cut(s) 83
BsrI ACTGG 1 cut(s) 421
BssAI RCCGGY 1 cut(s) 83
BssECI CCNNGG 1 cut(s) 21
BssMI GATC 1 cut(s) 345
BssNI GRCGYC 2 cut(s) 87, 252
BssT1I CCWWGG 1 cut(s) 21
Bst2UI CCWGG 2 cut(s) 150, 233
Bst4CI ACNGT 1 cut(s) 67
Bst6I CTCTTC 1 cut(s) 123
BstACI GRCGYC 2 cut(s) 87, 252
BstC8I GCNNGC 3 cut(s) 85, 462, 466
BstF5I GGATG 1 cut(s) 126
BstFNI CGCG 3 cut(s) 53, 58, 123
BstH2I RGCGCY 2 cut(s) 90, 255
BstHHI GCGC 2 cut(s) 89, 254
BstKTI GATC 1 cut(s) 348
BstMBI GATC 1 cut(s) 345
BstMCI CGRYCG 1 cut(s) 139
BstMWI GCNNNNNNNGC 1 cut(s) 218
BstNI CCWGG 2 cut(s) 150, 233
BstNSI RCATGY 2 cut(s) 301, 464
BstSCI CCNGG 3 cut(s) 89, 148, 231
BstUI CGCG 3 cut(s) 53, 58, 123
BstV2I GAAGAC 1 cut(s) 266
BsuRI GGCC 2 cut(s) 50, 94
BtrI CACGTC 1 cut(s) 351
BtsCI GGATG 1 cut(s) 126
BtsIMutI CAGTG 1 cut(s) 297
BtuMI TCGCGA 1 cut(s) 58
Cac8I GCNNGC 3 cut(s) 85, 462, 466
CfoI GCGC 2 cut(s) 89, 254
Cfr10I RCCGGY 1 cut(s) 83
Cfr13I GGNCC 2 cut(s) 92, 175
CseI GACGC 1 cut(s) 42
CsiI ACCWGGT 1 cut(s) 231
CviAII CATG 3 cut(s) 263, 298, 461
CviJI RGCY 6 cut(s) 50, 83, 94, 99, 212, 328
CviKI_1 RGCY 6 cut(s) 50, 83, 94, 99, 212, 328
DinI GGCGCC 2 cut(s) 88, 253
DpnI GATC 1 cut(s) 347
DpnII GATC 1 cut(s) 345
DriI GACNNNNNGTC 1 cut(s) 158
Eam1104I CTCTTC 1 cut(s) 123
Eam1105I GACNNNNNGTC 1 cut(s) 158
EarI CTCTTC 1 cut(s) 123
Eco130I CCWWGG 1 cut(s) 21
Eco47I GGWCC 1 cut(s) 175
Eco57I CTGAAG 1 cut(s) 453
EcoO109I RGGNCCY 1 cut(s) 175
EcoRII CCWGG 2 cut(s) 148, 231
EcoT14I CCWWGG 1 cut(s) 21
EgeI GGCGCC 2 cut(s) 88, 253
EheI GGCGCC 2 cut(s) 88, 253
ErhI CCWWGG 1 cut(s) 21
FaeI CATG 3 cut(s) 266, 301, 464
FaiI YATR 6 cut(s) 264, 281, 299, 314, 401, 462
FalI AAGNNNNNCTT 1 cut(s) 37
FaqI GGGAC 1 cut(s) 161
FatI CATG 3 cut(s) 262, 297, 460
FauI CCCGC 1 cut(s) 191
FblI GTMKAC 1 cut(s) 135
Fnu4HI GCNGC 2 cut(s) 51, 124
FokI GGATG 1 cut(s) 113
Fsp4HI GCNGC 2 cut(s) 51, 124
FspBI CTAG 1 cut(s) 465
GlaI GCGC 2 cut(s) 88, 253
GluI GCNGC 2 cut(s) 51, 124
HaeII RGCGCY 2 cut(s) 90, 255
HaeIII GGCC 2 cut(s) 50, 94
HapII CCGG 2 cut(s) 84, 90
HgaI GACGC 1 cut(s) 42
HhaI GCGC 2 cut(s) 89, 254
Hin1I GRCGYC 2 cut(s) 87, 252
Hin1II CATG 3 cut(s) 266, 301, 464
Hin6I GCGC 2 cut(s) 87, 252
HinP1I GCGC 2 cut(s) 87, 252
HincII GTYRAC 1 cut(s) 136
HindII GTYRAC 1 cut(s) 136
HindIII AAGCTT 1 cut(s) 326
HinfI GANTC 5 cut(s) 41, 60, 132, 141, 153
HpaII CCGG 2 cut(s) 84, 90
HphI GGTGA 4 cut(s) 55, 68, 181, 431
Hpy166II GTNNAC 3 cut(s) 136, 295, 318
Hpy188I TCNGA 3 cut(s) 46, 131, 476
Hpy188III TCNNGA 2 cut(s) 57, 384
Hpy8I GTNNAC 3 cut(s) 136, 295, 318
Hpy99I CGWCG 3 cut(s) 41, 58, 161
HpyAV CCTTC 2 cut(s) 198, 428
HpyCH4III ACNGT 1 cut(s) 67
HpyCH4IV ACGT 2 cut(s) 285, 350
HpyCH4V TGCA 2 cut(s) 221, 227
HpyF10VI GCNNNNNNNGC 1 cut(s) 218
HpySE526I ACGT 2 cut(s) 285, 350
Hsp92I GRCGYC 2 cut(s) 87, 252
Hsp92II CATG 3 cut(s) 266, 301, 464
HspAI GCGC 2 cut(s) 87, 252
KasI GGCGCC 2 cut(s) 86, 251
KroI GCCGGC 1 cut(s) 83
KroNI GCCGGC 1 cut(s) 85
Kzo9I GATC 1 cut(s) 345
LguI GCTCTTC 1 cut(s) 123
LpnPI CCDG 8 cut(s) 97, 103, 135, 162, 218, 245, 369, 402
LweI GCATC 1 cut(s) 135
MabI ACCWGGT 1 cut(s) 231
MaeI CTAG 1 cut(s) 465
MaeII ACGT 2 cut(s) 285, 350
MaeIII GTNAC 2 cut(s) 67, 351
MalI GATC 1 cut(s) 347
MboI GATC 1 cut(s) 345
MboII GAAGA 3 cut(s) 25, 110, 266
MfeI CAATTG 1 cut(s) 222
MluCI AATT 1 cut(s) 222
Mly113I GGCGCC 2 cut(s) 87, 252
MlyI GAGTC 5 cut(s) 50, 54, 141, 147, 150
MnlI CCTC 7 cut(s) 40, 84, 189, 197, 262, 365, 415
MroNI GCCGGC 1 cut(s) 83
MspI CCGG 2 cut(s) 84, 90
MspR9I CCNGG 3 cut(s) 91, 150, 233
MunI CAATTG 1 cut(s) 222
Mva1269I GAATGC 1 cut(s) 442
MvaI CCWGG 2 cut(s) 150, 233
MvnI CGCG 3 cut(s) 53, 58, 123
MwoI GCNNNNNNNGC 1 cut(s) 218
NaeI GCCGGC 1 cut(s) 85
NarI GGCGCC 2 cut(s) 87, 252
NciI CCSGG 1 cut(s) 91
NdeII GATC 1 cut(s) 345
NgoMIV GCCGGC 1 cut(s) 83
NheI GCTAGC 1 cut(s) 464
NlaIII CATG 3 cut(s) 266, 301, 464
NlaIV GGNNCC 3 cut(s) 88, 177, 253
NmeAIII GCCGAG 1 cut(s) 120
NmuCI GTSAC 1 cut(s) 351
NruI TCGCGA 1 cut(s) 58
NspI RCATGY 2 cut(s) 301, 464
PaeI GCATGC 1 cut(s) 464
PciI ACATGT 1 cut(s) 297
PciSI GCTCTTC 1 cut(s) 123
PcsI WCGNNNNNNNCGW 2 cut(s) 127, 141
PctI GAATGC 1 cut(s) 442
PdiI GCCGGC 1 cut(s) 85
PflFI GACNNNGTC 1 cut(s) 140
PkrI GCNGC 2 cut(s) 52, 125
PleI GAGTC 5 cut(s) 49, 54, 140, 147, 149
PluTI GGCGCC 2 cut(s) 90, 255
PpsI GAGTC 5 cut(s) 49, 54, 140, 147, 149
PpuMI RGGWCCY 1 cut(s) 175
PscI ACATGT 1 cut(s) 297
Psp1406I AACGTT 1 cut(s) 285
Psp5II RGGWCCY 1 cut(s) 175
Psp6I CCWGG 2 cut(s) 148, 231
PspGI CCWGG 2 cut(s) 148, 231
PspN4I GGNNCC 3 cut(s) 88, 177, 253
PspPI GGNCC 2 cut(s) 92, 175
PspPPI RGGWCCY 1 cut(s) 175
PsyI GACNNNGTC 1 cut(s) 140
RruI TCGCGA 1 cut(s) 58
SalI GTCGAC 1 cut(s) 134
SapI GCTCTTC 1 cut(s) 123
SatI GCNGC 2 cut(s) 51, 124
Sau3AI GATC 1 cut(s) 345
Sau96I GGNCC 2 cut(s) 92, 175
SchI GAGTC 5 cut(s) 50, 54, 141, 147, 150
ScrFI CCNGG 3 cut(s) 91, 150, 233
SexAI ACCWGGT 1 cut(s) 231
SfaNI GCATC 1 cut(s) 135
SfoI GGCGCC 2 cut(s) 88, 253
SinI GGWCC 1 cut(s) 175
SphI GCATGC 1 cut(s) 464
Sse9I AATT 1 cut(s) 222
SsiI CCGC 3 cut(s) 51, 123, 184
SspDI GGCGCC 2 cut(s) 86, 251
SspMI CTAG 1 cut(s) 465
StyD4I CCNGG 3 cut(s) 89, 148, 231
StyI CCWWGG 1 cut(s) 21
TaaI ACNGT 1 cut(s) 67
TaiI ACGT 2 cut(s) 288, 353
TaqI TCGA 3 cut(s) 135, 144, 237
TaqII GACCGA 1 cut(s) 153
TasI AATT 1 cut(s) 222
TauI GCSGC 2 cut(s) 53, 126
TscAI CASTG 1 cut(s) 297
TseFI GTSAC 1 cut(s) 351
Tsp45I GTSAC 1 cut(s) 351
TspDTI ATGAA 3 cut(s) 251, 255, 296
TspRI CASTG 1 cut(s) 297
Tth111I GACNNNGTC 1 cut(s) 140
VpaK11BI GGWCC 1 cut(s) 175
XceI RCATGY 2 cut(s) 301, 464
XmiI GTMKAC 1 cut(s) 135
XspI CTAG 1 cut(s) 465
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.