FvH4_3g37930

Acyl-coenzyme A thioesterase 13-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000478
Physical Location & Seq
Reverse (-)
32483076 .. 32489857
6782 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g37930.t1

Sequence Viewer

Length: 480 bp
ATGCAGAAGGCGAAGGAGCACTTGGGTCTAACAGACCAAGACTCGGAGGCCGTGTCGCAACTCGACATTGCAGCTAAACGAGTCGGGGACGAGTCTTGCTTCTACGAGGATTTCGCTCTTAGAGGCATCCGAGTCGACCGAGTCGAACCCGGACTCGTCGTCTGCACTTTCAAGGTCCCTCCCCGCCTCACCGACAGAGATGGAAATTTTGCCAGTGGTGCAATTGCAAACCTTGTTGATGTAGTTGGTAATTCTTCAGTCTATTCTCTGGGTCAAACTATGAATGTTTCAGTAGACATGACCATCTCGTATATTTCAAAGGCAAAGATCAATGATGAACTAGAGATCACCTCAAAGCGGTTGGGACAAAGAGGACGTTATTTAGGAACAATGGTGCTCATGAGAAACAAAGCAACTGGGGAGATTATTGCTGAAGGTCGACATTCATTGTTTCGTTCTAGTTTTGTTCCCAAACTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
4HBT

Protein Analysis

160

Amino Acids

17.5

Weight (kDa)

7.76

Isoelectric Point (pI)

28.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000478)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29590
fragaria_vesca FvH4_3g37930 FvH4_3g37930 FvH4_3g37970 FvH4_3g37990 FvH4_3g37990 FvH4_3g38000 FvH4_3g38010 FvH4_3g38050 FvH4_3g38060
malus_domestica MD03G1077300.v1.1 MD03G1077400.v1.1 MD03G1077500.v1.1 MD08G1031500.v1.1 MD11G1081500.v1.1 MD11G1081600.v1.1 MD11G1081700.v1.1 MD11G1081800.v1.1 MD11G1081900.v1.1
prunus_persica Prupe.6G061800_v2.0.a1 Prupe.6G061900_v2.0.a1 Prupe.6G062000_v2.0.a1 Prupe.6G062000_v2.0.a1 Prupe.6G062100_v2.0.a1 Prupe.6G062100_v2.0.a1 Prupe.6G062200_v2.0.a1 Prupe.6G062300_v2.0.a1
pyrus_communis pycom03g06110 pycom03g06120 pycom03g06130 pycom11g06960 pycom11g06970 pycom11g06980 pycom11g07020
rosa_chinensis RchiOBHm_Chr5g0068361 RchiOBHm_Chr5g0068381 RchiOBHm_Chr5g0068391 RchiOBHm_Chr5g0068401 RchiOBHm_Chr5g0068411 RchiOBHm_Chr5g0068441
rosa_laevigata RLG00000035969 RLG00000035971 RLG00000035972 RLG00000035973 RLG00000035974
rosa_multiflora Rmu_sc0001418.1_g000002 Rmu_sc0003450.1_g000002 Rmu_sc0003450.1_g000003 Rmu_sc0003450.1_g000004 Rmu_sc0003450.1_g000007 Rmu_sc0005087.1_g000001 Rmu_sc0006054.1_g000001
rosa_roxburghii Rroxscaffold_1G00012370 Rroxscaffold_1G00012380 Rroxscaffold_1G00012390 Rroxscaffold_1G00012400 Rroxscaffold_1G00012420 Rroxscaffold_1G00013110 Rroxscaffold_1G00013120 Rroxscaffold_1G00013130 Rroxscaffold_1G00013150 Rroxscaffold_1G00013160
rosa_rugosa Rorug05G0389200 Rorug05G0389400 Rorug05G0389500 Rorug05G0389600 Rorug05G0389600
rosa_samantha Rh5AG447900 Rh5AG448100 Rh5AG448200 Rh5AG448300 Rh5AG448400 Rh5BG465700 Rh5BG465900 Rh5BG466200 Rh5BG466300 Rh5BG466700 Rh5CG487500 Rh5CG487800 Rh5CG487900 Rh5CG488300 Rh5DG479500 Rh5DG479700 Rh5DG479800 Rh5DG480100
rosa_wichuraiana Rw5G041800 Rw5G041830 Rw5G041840 Rw5G041850 Rw5G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 3 cut(s) 135, 294, 439
AciI CCGC 2 cut(s) 184, 358
AcsI RAATTY 1 cut(s) 205
AcuI CTGAAG 2 cut(s) 240, 453
AfiI CCNNNNNNNGG 2 cut(s) 43, 357
AgsI TTSAA 2 cut(s) 172, 318
AhdI GACNNNNNGTC 1 cut(s) 158
AjuI GAANNNNNNNTTGG 1 cut(s) 37
AluBI AGCT 1 cut(s) 74
AluI AGCT 1 cut(s) 74
Alw21I GWGCWC 2 cut(s) 21, 399
AoxI GGCC 1 cut(s) 48
ApeKI GCWGC 1 cut(s) 71
ApoI RAATTY 1 cut(s) 205
AspS9I GGNCC 1 cut(s) 175
AsuC2I CCSGG 1 cut(s) 150
AsuHPI GGTGA 2 cut(s) 181, 340
AvaII GGWCC 1 cut(s) 175
Bbv12I GWGCWC 2 cut(s) 21, 399
BbvI GCAGC 1 cut(s) 83
BccI CCATC 2 cut(s) 194, 311
BceAI ACGGC 1 cut(s) 35
BcgI CGANNNNNNTGC 2 cut(s) 115, 149
BcnI CCSGG 1 cut(s) 150
BfaI CTAG 2 cut(s) 341, 459
BisI GCNGC 1 cut(s) 72
BlsI GCNGC 1 cut(s) 73
Bme1390I CCNGG 1 cut(s) 150
Bme18I GGWCC 1 cut(s) 175
BmeRI GACNNNNNGTC 1 cut(s) 158
BmgT120I GGNCC 1 cut(s) 175
BmiI GGNNCC 1 cut(s) 177
BmrFI CCNGG 1 cut(s) 150
BmrI ACTGGG 1 cut(s) 426
BmsI GCATC 1 cut(s) 135
BmuI ACTGGG 1 cut(s) 426
BplI GAGNNNNNCTC 2 cut(s) 335, 367
BpuMI CCSGG 1 cut(s) 150
BsaXI ACNNNNNCTCC 2 cut(s) 38, 68
Bsc4I CCNNNNNNNGG 2 cut(s) 43, 357
Bse1I ACTGG 2 cut(s) 213, 421
Bse3DI GCAATG 1 cut(s) 66
BseGI GGATG 1 cut(s) 126
BseLI CCNNNNNNNGG 2 cut(s) 43, 357
BseMI GCAATG 1 cut(s) 66
BseNI ACTGG 2 cut(s) 213, 421
BseXI GCAGC 1 cut(s) 83
BsgI GTGCAG 1 cut(s) 148
Bsh1285I CGRYCG 1 cut(s) 139
BshFI GGCC 1 cut(s) 50
BsiEI CGRYCG 1 cut(s) 139
BsiHKAI GWGCWC 2 cut(s) 21, 399
BsiSI CCGG 1 cut(s) 150
BslFI GGGAC 3 cut(s) 101, 161, 378
BslI CCNNNNNNNGG 2 cut(s) 43, 357
BsmFI GGGAC 3 cut(s) 101, 161, 378
BsnI GGCC 1 cut(s) 50
Bsp1286I GDGCHC 2 cut(s) 21, 399
Bsp143I GATC 2 cut(s) 327, 345
BspACI CCGC 2 cut(s) 184, 358
BspANI GGCC 1 cut(s) 50
BspHI TCATGA 1 cut(s) 399
BspLI GGNNCC 1 cut(s) 177
BsrDI GCAATG 1 cut(s) 66
BsrI ACTGG 2 cut(s) 213, 421
BssMI GATC 2 cut(s) 327, 345
BstDEI CTNAG 1 cut(s) 119
BstF5I GGATG 1 cut(s) 126
BstKTI GATC 2 cut(s) 330, 348
BstMBI GATC 2 cut(s) 327, 345
BstMCI CGRYCG 1 cut(s) 139
BstMWI GCNNNNNNNGC 1 cut(s) 218
BstSCI CCNGG 1 cut(s) 148
BstV1I GCAGC 1 cut(s) 83
BsuRI GGCC 1 cut(s) 50
BtsCI GGATG 1 cut(s) 126
BtsIMutI CAGTG 1 cut(s) 220
CciI TCATGA 1 cut(s) 399
Cfr13I GGNCC 1 cut(s) 175
CviAII CATG 2 cut(s) 298, 400
CviJI RGCY 2 cut(s) 50, 74
CviKI_1 RGCY 2 cut(s) 50, 74
DdeI CTNAG 1 cut(s) 119
DpnI GATC 2 cut(s) 329, 347
DpnII GATC 2 cut(s) 327, 345
DriI GACNNNNNGTC 1 cut(s) 158
Eam1105I GACNNNNNGTC 1 cut(s) 158
Eco47I GGWCC 1 cut(s) 175
Eco57I CTGAAG 2 cut(s) 240, 453
EcoO109I RGGNCCY 1 cut(s) 175
FaeI CATG 2 cut(s) 301, 403
FaiI YATR 4 cut(s) 281, 299, 312, 401
FalI AAGNNNNNCTT 1 cut(s) 37
FaqI GGGAC 3 cut(s) 101, 161, 378
FatI CATG 2 cut(s) 297, 399
FauI CCCGC 1 cut(s) 191
FblI GTMKAC 3 cut(s) 135, 294, 439
Fnu4HI GCNGC 1 cut(s) 72
FokI GGATG 1 cut(s) 113
Fsp4HI GCNGC 1 cut(s) 72
FspBI CTAG 2 cut(s) 341, 459
GluI GCNGC 1 cut(s) 72
HaeIII GGCC 1 cut(s) 50
HapII CCGG 1 cut(s) 150
Hin1II CATG 2 cut(s) 301, 403
HincII GTYRAC 2 cut(s) 136, 440
HindII GTYRAC 2 cut(s) 136, 440
HinfI GANTC 6 cut(s) 41, 81, 92, 132, 141, 153
HpaII CCGG 1 cut(s) 150
HphI GGTGA 2 cut(s) 181, 340
Hpy166II GTNNAC 3 cut(s) 136, 295, 440
Hpy188I TCNGA 3 cut(s) 46, 131, 479
Hpy188III TCNNGA 1 cut(s) 400
Hpy8I GTNNAC 3 cut(s) 136, 295, 440
Hpy99I CGWCG 1 cut(s) 161
HpyAV CCTTC 2 cut(s) 7, 428
HpyCH4IV ACGT 1 cut(s) 376
HpyCH4V TGCA 5 cut(s) 4, 71, 165, 221, 227
HpyF10VI GCNNNNNNNGC 1 cut(s) 218
HpyF3I CTNAG 1 cut(s) 119
HpySE526I ACGT 1 cut(s) 376
Hsp92II CATG 2 cut(s) 301, 403
Kzo9I GATC 2 cut(s) 327, 345
LmnI GCTCC 1 cut(s) 16
LpnPI CCDG 4 cut(s) 163, 226, 254, 402
Lsp1109I GCAGC 1 cut(s) 83
LweI GCATC 1 cut(s) 135
MaeI CTAG 2 cut(s) 341, 459
MaeII ACGT 1 cut(s) 376
MalI GATC 2 cut(s) 329, 347
MboI GATC 2 cut(s) 327, 345
MboII GAAGA 1 cut(s) 246
MfeI CAATTG 1 cut(s) 222
MhlI GDGCHC 2 cut(s) 21, 399
MluCI AATT 3 cut(s) 205, 222, 250
MlyI GAGTC 6 cut(s) 35, 90, 101, 141, 147, 150
MnlI CCTC 7 cut(s) 40, 100, 116, 189, 197, 361, 365
MspI CCGG 1 cut(s) 150
MspR9I CCNGG 1 cut(s) 150
MunI CAATTG 1 cut(s) 222
MwoI GCNNNNNNNGC 1 cut(s) 218
NciI CCSGG 1 cut(s) 150
NdeII GATC 2 cut(s) 327, 345
NlaIII CATG 2 cut(s) 301, 403
NlaIV GGNNCC 1 cut(s) 177
PagI TCATGA 1 cut(s) 399
PcsI WCGNNNNNNNCGW 1 cut(s) 141
PflFI GACNNNGTC 1 cut(s) 140
PkrI GCNGC 1 cut(s) 73
PleI GAGTC 6 cut(s) 35, 89, 100, 140, 147, 149
PpsI GAGTC 6 cut(s) 35, 89, 100, 140, 147, 149
PpuMI RGGWCCY 1 cut(s) 175
Psp5II RGGWCCY 1 cut(s) 175
PspN4I GGNNCC 1 cut(s) 177
PspPI GGNCC 1 cut(s) 175
PspPPI RGGWCCY 1 cut(s) 175
PsyI GACNNNGTC 1 cut(s) 140
SalI GTCGAC 2 cut(s) 134, 438
SatI GCNGC 1 cut(s) 72
Sau3AI GATC 2 cut(s) 327, 345
Sau96I GGNCC 1 cut(s) 175
SchI GAGTC 6 cut(s) 35, 90, 101, 141, 147, 150
ScrFI CCNGG 1 cut(s) 150
SduI GDGCHC 2 cut(s) 21, 399
SetI ASST 6 cut(s) 76, 177, 234, 353, 379, 439
SfaNI GCATC 1 cut(s) 135
SinI GGWCC 1 cut(s) 175
Sse9I AATT 3 cut(s) 205, 222, 250
SsiI CCGC 2 cut(s) 184, 358
SspMI CTAG 2 cut(s) 341, 459
StyD4I CCNGG 1 cut(s) 148
TaiI ACGT 1 cut(s) 379
TaqI TCGA 4 cut(s) 63, 135, 144, 439
TaqII GACCGA 1 cut(s) 153
TasI AATT 3 cut(s) 205, 222, 250
TscAI CASTG 1 cut(s) 220
TseI GCWGC 1 cut(s) 71
TspDTI ATGAA 3 cut(s) 296, 351, 435
TspRI CASTG 1 cut(s) 220
Tth111I GACNNNGTC 1 cut(s) 140
VpaK11BI GGWCC 1 cut(s) 175
XapI RAATTY 1 cut(s) 205
XmiI GTMKAC 3 cut(s) 135, 294, 439
XspI CTAG 2 cut(s) 341, 459
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.