RchiOBHm_Chr5g0068411

Acyl-coenzyme A thioesterase 13-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000478
Physical Location & Seq
Reverse (-)
74389704 .. 74391650
1947 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ34386

Sequence Viewer

Length: 477 bp
ATGGAGAAGGCAAAGAAGCGTCTGGAGCTGAGCGAGGAAGAGTCACGGTGTGTGTCTCGACTCCCCGTTCCATCTCACTCAGTCGGCTCCGGGTTGAGCTTCTACGAGGATTTCGCTCTCAAAGGCATCCGAGTCGACCGAGTCGAACCCGGTCTCGTCGTCTGTACCTTCAAGGTCCCTCCCCGCCTCACCGATAGAAGTGGGAAGTTGGCAAATGGAGCAATTGCAAATCTTGTCGATGAAGTTGGTTATGCTGTAGTTCACGTTGAGGGTTTACCTATGAGTGTTTCAGTGGACATGTCCATTTCTGTTATGTCCACTGCCAAGCTTAATGATGATTTAGAGATCAGCTCAAAGGTGTTGGGAAAAAAAGGAGGTTATTCTGGAACATTAGTGCTTATGAGAAATAAAGCAACTGGGGAGGTTATTGCTGAAGGTCGGCATTCCTTGTTCGGTAGACATCCTAGCAAACTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
4HBT

Protein Analysis

158

Amino Acids

17.04

Weight (kDa)

8.91

Isoelectric Point (pI)

39.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000478)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29590
fragaria_vesca FvH4_3g37930 FvH4_3g37930 FvH4_3g37970 FvH4_3g37990 FvH4_3g37990 FvH4_3g38000 FvH4_3g38010 FvH4_3g38050 FvH4_3g38060
malus_domestica MD03G1077300.v1.1 MD03G1077400.v1.1 MD03G1077500.v1.1 MD08G1031500.v1.1 MD11G1081500.v1.1 MD11G1081600.v1.1 MD11G1081700.v1.1 MD11G1081800.v1.1 MD11G1081900.v1.1
prunus_persica Prupe.6G061800_v2.0.a1 Prupe.6G061900_v2.0.a1 Prupe.6G062000_v2.0.a1 Prupe.6G062000_v2.0.a1 Prupe.6G062100_v2.0.a1 Prupe.6G062100_v2.0.a1 Prupe.6G062200_v2.0.a1 Prupe.6G062300_v2.0.a1
pyrus_communis pycom03g06110 pycom03g06120 pycom03g06130 pycom11g06960 pycom11g06970 pycom11g06980 pycom11g07020
rosa_chinensis RchiOBHm_Chr5g0068361 RchiOBHm_Chr5g0068381 RchiOBHm_Chr5g0068391 RchiOBHm_Chr5g0068401 RchiOBHm_Chr5g0068411 RchiOBHm_Chr5g0068441
rosa_laevigata RLG00000035969 RLG00000035971 RLG00000035972 RLG00000035973 RLG00000035974
rosa_multiflora Rmu_sc0001418.1_g000002 Rmu_sc0003450.1_g000002 Rmu_sc0003450.1_g000003 Rmu_sc0003450.1_g000004 Rmu_sc0003450.1_g000007 Rmu_sc0005087.1_g000001 Rmu_sc0006054.1_g000001
rosa_roxburghii Rroxscaffold_1G00012370 Rroxscaffold_1G00012380 Rroxscaffold_1G00012390 Rroxscaffold_1G00012400 Rroxscaffold_1G00012420 Rroxscaffold_1G00013110 Rroxscaffold_1G00013120 Rroxscaffold_1G00013130 Rroxscaffold_1G00013150 Rroxscaffold_1G00013160
rosa_rugosa Rorug05G0389200 Rorug05G0389400 Rorug05G0389500 Rorug05G0389600 Rorug05G0389600
rosa_samantha Rh5AG447900 Rh5AG448100 Rh5AG448200 Rh5AG448300 Rh5AG448400 Rh5BG465700 Rh5BG465900 Rh5BG466200 Rh5BG466300 Rh5BG466700 Rh5CG487500 Rh5CG487800 Rh5CG487900 Rh5CG488300 Rh5DG479500 Rh5DG479700 Rh5DG479800 Rh5DG480100
rosa_wichuraiana Rw5G041800 Rw5G041830 Rw5G041840 Rw5G041850 Rw5G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 135, 457
AciI CCGC 1 cut(s) 184
AcuI CTGAAG 1 cut(s) 453
AdeI CACNNNGTG 1 cut(s) 50
AfaI GTAC 1 cut(s) 166
AflIII ACRYGT 1 cut(s) 297
AgsI TTSAA 1 cut(s) 172
AluBI AGCT 4 cut(s) 28, 99, 328, 351
AluI AGCT 4 cut(s) 28, 99, 328, 351
Alw26I GTCTC 2 cut(s) 60, 158
AspS9I GGNCC 1 cut(s) 175
AsuC2I CCSGG 2 cut(s) 91, 150
AsuHPI GGTGA 1 cut(s) 181
AvaII GGWCC 1 cut(s) 175
BccI CCATC 1 cut(s) 79
BcgI CGANNNNNNTGC 2 cut(s) 115, 149
BcnI CCSGG 2 cut(s) 91, 150
BcoDI GTCTC 2 cut(s) 60, 158
BfaI CTAG 1 cut(s) 465
BfmI CTRYAG 1 cut(s) 255
BlpI GCTNAGC 1 cut(s) 29
Bme1390I CCNGG 2 cut(s) 91, 150
Bme18I GGWCC 1 cut(s) 175
BmgT120I GGNCC 1 cut(s) 175
BmiI GGNNCC 2 cut(s) 88, 177
BmrFI CCNGG 2 cut(s) 91, 150
BmrI ACTGGG 1 cut(s) 426
BmsI GCATC 1 cut(s) 135
BmuI ACTGGG 1 cut(s) 426
BplI GAGNNNNNCTC 2 cut(s) 335, 367
BpmI CTGGAG 1 cut(s) 44
Bpu1102I GCTNAGC 1 cut(s) 29
BpuMI CCSGG 2 cut(s) 91, 150
BsaI GGTCTC 1 cut(s) 158
Bse1I ACTGG 1 cut(s) 421
BseGI GGATG 2 cut(s) 126, 460
BseMII CTCAG 2 cut(s) 20, 93
BseNI ACTGG 1 cut(s) 421
Bsh1285I CGRYCG 1 cut(s) 139
BsiEI CGRYCG 1 cut(s) 139
BsiSI CCGG 2 cut(s) 90, 150
BslFI GGGAC 1 cut(s) 161
BsmAI GTCTC 2 cut(s) 60, 158
BsmFI GGGAC 1 cut(s) 161
BsmI GAATGC 1 cut(s) 442
Bso31I GGTCTC 1 cut(s) 158
Bsp143I GATC 1 cut(s) 345
Bsp1720I GCTNAGC 1 cut(s) 29
BspACI CCGC 1 cut(s) 184
BspCNI CTCAG 2 cut(s) 21, 92
BspLI GGNNCC 2 cut(s) 88, 177
BspTNI GGTCTC 1 cut(s) 158
BsrI ACTGG 1 cut(s) 421
BssMI GATC 1 cut(s) 345
Bst4CI ACNGT 1 cut(s) 48
Bst6I CTCTTC 1 cut(s) 33
BstDEI CTNAG 2 cut(s) 29, 79
BstF5I GGATG 2 cut(s) 126, 460
BstKTI GATC 1 cut(s) 348
BstMAI GTCTC 2 cut(s) 60, 158
BstMBI GATC 1 cut(s) 345
BstMCI CGRYCG 1 cut(s) 139
BstMWI GCNNNNNNNGC 2 cut(s) 25, 218
BstNSI RCATGY 1 cut(s) 301
BstSCI CCNGG 2 cut(s) 89, 148
BstSFI CTRYAG 1 cut(s) 255
BtsCI GGATG 2 cut(s) 126, 460
BtsI GCAGTG 1 cut(s) 318
BtsIMutI CAGTG 2 cut(s) 297, 318
Cfr13I GGNCC 1 cut(s) 175
CseI GACGC 1 cut(s) 8
Csp6I GTAC 1 cut(s) 165
CviAII CATG 1 cut(s) 298
CviJI RGCY 5 cut(s) 28, 87, 99, 328, 351
CviKI_1 RGCY 5 cut(s) 28, 87, 99, 328, 351
CviQI GTAC 1 cut(s) 165
DdeI CTNAG 2 cut(s) 29, 79
DpnI GATC 1 cut(s) 347
DpnII GATC 1 cut(s) 345
DraIII CACNNNGTG 1 cut(s) 50
Eam1104I CTCTTC 1 cut(s) 33
EarI CTCTTC 1 cut(s) 33
Eco31I GGTCTC 1 cut(s) 158
Eco47I GGWCC 1 cut(s) 175
Eco57I CTGAAG 1 cut(s) 453
EcoO109I RGGNCCY 1 cut(s) 175
FaeI CATG 1 cut(s) 301
FaiI YATR 5 cut(s) 252, 281, 299, 314, 401
FaqI GGGAC 1 cut(s) 161
FatI CATG 1 cut(s) 297
FauI CCCGC 1 cut(s) 191
FblI GTMKAC 2 cut(s) 135, 457
FokI GGATG 2 cut(s) 113, 447
FspBI CTAG 1 cut(s) 465
GsuI CTGGAG 1 cut(s) 44
HapII CCGG 2 cut(s) 90, 150
HgaI GACGC 1 cut(s) 8
Hin1II CATG 1 cut(s) 301
HincII GTYRAC 1 cut(s) 136
HindII GTYRAC 1 cut(s) 136
HindIII AAGCTT 1 cut(s) 326
HinfI GANTC 4 cut(s) 41, 60, 132, 141
HpaII CCGG 2 cut(s) 90, 150
HphI GGTGA 1 cut(s) 181
Hpy166II GTNNAC 6 cut(s) 136, 262, 275, 295, 318, 458
Hpy188I TCNGA 1 cut(s) 131
Hpy188III TCNNGA 3 cut(s) 23, 57, 384
Hpy8I GTNNAC 6 cut(s) 136, 262, 275, 295, 318, 458
Hpy99I CGWCG 1 cut(s) 161
HpyAV CCTTC 2 cut(s) 178, 428
HpyCH4III ACNGT 1 cut(s) 48
HpyCH4IV ACGT 1 cut(s) 264
HpyCH4V TGCA 1 cut(s) 227
HpyF10VI GCNNNNNNNGC 2 cut(s) 25, 218
HpyF3I CTNAG 2 cut(s) 29, 79
HpySE526I ACGT 1 cut(s) 264
Hsp92II CATG 1 cut(s) 301
Kzo9I GATC 1 cut(s) 345
LmnI GCTCC 3 cut(s) 25, 92, 218
LpnPI CCDG 5 cut(s) 8, 103, 163, 369, 402
LweI GCATC 1 cut(s) 135
MaeI CTAG 1 cut(s) 465
MaeII ACGT 1 cut(s) 264
MaeIII GTNAC 1 cut(s) 42
MalI GATC 1 cut(s) 347
MboI GATC 1 cut(s) 345
MboII GAAGA 1 cut(s) 50
MfeI CAATTG 1 cut(s) 222
MluCI AATT 1 cut(s) 222
MlyI GAGTC 4 cut(s) 50, 54, 141, 150
MnlI CCTC 7 cut(s) 28, 100, 189, 197, 262, 368, 415
MseI TTAA 1 cut(s) 330
MspI CCGG 2 cut(s) 90, 150
MspR9I CCNGG 2 cut(s) 91, 150
MunI CAATTG 1 cut(s) 222
Mva1269I GAATGC 1 cut(s) 442
MwoI GCNNNNNNNGC 2 cut(s) 25, 218
NciI CCSGG 2 cut(s) 91, 150
NdeII GATC 1 cut(s) 345
NlaIII CATG 1 cut(s) 301
NlaIV GGNNCC 2 cut(s) 88, 177
NmuCI GTSAC 1 cut(s) 42
NspI RCATGY 1 cut(s) 301
PciI ACATGT 1 cut(s) 297
PcsI WCGNNNNNNNCGW 1 cut(s) 141
PctI GAATGC 1 cut(s) 442
PflFI GACNNNGTC 1 cut(s) 140
PleI GAGTC 4 cut(s) 49, 54, 140, 149
PpsI GAGTC 4 cut(s) 49, 54, 140, 149
PpuMI RGGWCCY 1 cut(s) 175
PscI ACATGT 1 cut(s) 297
Psp5II RGGWCCY 1 cut(s) 175
PspN4I GGNNCC 2 cut(s) 88, 177
PspPI GGNCC 1 cut(s) 175
PspPPI RGGWCCY 1 cut(s) 175
PsyI GACNNNGTC 1 cut(s) 140
RsaI GTAC 1 cut(s) 166
RsaNI GTAC 1 cut(s) 165
SalI GTCGAC 1 cut(s) 134
SaqAI TTAA 1 cut(s) 330
Sau3AI GATC 1 cut(s) 345
Sau96I GGNCC 1 cut(s) 175
SchI GAGTC 4 cut(s) 50, 54, 141, 150
ScrFI CCNGG 2 cut(s) 91, 150
SfaNI GCATC 1 cut(s) 135
SfcI CTRYAG 1 cut(s) 255
SinI GGWCC 1 cut(s) 175
Sse9I AATT 1 cut(s) 222
SsiI CCGC 1 cut(s) 184
SspMI CTAG 1 cut(s) 465
StyD4I CCNGG 2 cut(s) 89, 148
TaaI ACNGT 1 cut(s) 48
TaiI ACGT 1 cut(s) 267
TaqI TCGA 4 cut(s) 58, 135, 144, 237
TaqII GACCGA 1 cut(s) 153
TasI AATT 1 cut(s) 222
Tru1I TTAA 1 cut(s) 330
Tru9I TTAA 1 cut(s) 330
TscAI CASTG 2 cut(s) 297, 325
TseFI GTSAC 1 cut(s) 42
Tsp45I GTSAC 1 cut(s) 42
TspDTI ATGAA 1 cut(s) 255
TspRI CASTG 2 cut(s) 297, 325
Tth111I GACNNNGTC 1 cut(s) 140
VpaK11BI GGWCC 1 cut(s) 175
XceI RCATGY 1 cut(s) 301
XmiI GTMKAC 2 cut(s) 135, 457
XspI CTAG 1 cut(s) 465
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.