Prupe.6G062100_v2.0.a1

Acyl-coenzyme A thioesterase 13-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000478
Physical Location & Seq
Forward (+)
4304768 .. 4306176
1409 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G062100.1

Sequence Viewer

Length: 492 bp
ATGGAGATGAGGAAGGTGAACAAGTCTCTGCAGCTAACCCAGGAAGAGTCAGAGTCCGTCTCGCAACTCGTCATTCCAGCTAAAGGATACGGCGAGTCGAGCTTCTACGAGGCTTTTGCTCTTCGAGGCATCCGACTGGATCGAGTCGAACCAGGAGTACTCGTCGTCTGTTCTTTCAAGGTCCCTTCCCGTCTCGCCGATAGAAGTGGAAATTTGGCTAATGGTGCAATTGCAAACCTTGTTGATATAGTTGGTGCTGCCGTAGCTTATGTTCCAGGCCAATCTTTGAATGTTTCTGTGGACATTTCCATCTCCTACATTTCAACTGCCAAACTTCATGATGAGCTAGAGATAACTTCAAGAATGTTAGGACGAGTAGGAGGTTGTTCTGGAACAATAGTCATTTTGAGAAATAAAACAACTGGGGAAATTATAGCTGAAGGTCGACATTCATTGTTTCGTTCACATGTTGGTCCCATTCCCAAACTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
4HBT

Protein Analysis

164

Amino Acids

17.51

Weight (kDa)

8.62

Isoelectric Point (pI)

34.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000478)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29590
fragaria_vesca FvH4_3g37930 FvH4_3g37930 FvH4_3g37970 FvH4_3g37990 FvH4_3g37990 FvH4_3g38000 FvH4_3g38010 FvH4_3g38050 FvH4_3g38060
malus_domestica MD03G1077300.v1.1 MD03G1077400.v1.1 MD03G1077500.v1.1 MD08G1031500.v1.1 MD11G1081500.v1.1 MD11G1081600.v1.1 MD11G1081700.v1.1 MD11G1081800.v1.1 MD11G1081900.v1.1
prunus_persica Prupe.6G061800_v2.0.a1 Prupe.6G061900_v2.0.a1 Prupe.6G062000_v2.0.a1 Prupe.6G062000_v2.0.a1 Prupe.6G062100_v2.0.a1 Prupe.6G062100_v2.0.a1 Prupe.6G062200_v2.0.a1 Prupe.6G062300_v2.0.a1
pyrus_communis pycom03g06110 pycom03g06120 pycom03g06130 pycom11g06960 pycom11g06970 pycom11g06980 pycom11g07020
rosa_chinensis RchiOBHm_Chr5g0068361 RchiOBHm_Chr5g0068381 RchiOBHm_Chr5g0068391 RchiOBHm_Chr5g0068401 RchiOBHm_Chr5g0068411 RchiOBHm_Chr5g0068441
rosa_laevigata RLG00000035969 RLG00000035971 RLG00000035972 RLG00000035973 RLG00000035974
rosa_multiflora Rmu_sc0001418.1_g000002 Rmu_sc0003450.1_g000002 Rmu_sc0003450.1_g000003 Rmu_sc0003450.1_g000004 Rmu_sc0003450.1_g000007 Rmu_sc0005087.1_g000001 Rmu_sc0006054.1_g000001
rosa_roxburghii Rroxscaffold_1G00012370 Rroxscaffold_1G00012380 Rroxscaffold_1G00012390 Rroxscaffold_1G00012400 Rroxscaffold_1G00012420 Rroxscaffold_1G00013110 Rroxscaffold_1G00013120 Rroxscaffold_1G00013130 Rroxscaffold_1G00013150 Rroxscaffold_1G00013160
rosa_rugosa Rorug05G0389200 Rorug05G0389400 Rorug05G0389500 Rorug05G0389600 Rorug05G0389600
rosa_samantha Rh5AG447900 Rh5AG448100 Rh5AG448200 Rh5AG448300 Rh5AG448400 Rh5BG465700 Rh5BG465900 Rh5BG466200 Rh5BG466300 Rh5BG466700 Rh5CG487500 Rh5CG487800 Rh5CG487900 Rh5CG488300 Rh5DG479500 Rh5DG479700 Rh5DG479800 Rh5DG480100
rosa_wichuraiana Rw5G041800 Rw5G041830 Rw5G041840 Rw5G041850 Rw5G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 445
AclWI GGATC 1 cut(s) 147
AcsI RAATTY 1 cut(s) 211
AcuI CTGAAG 1 cut(s) 459
AfaI GTAC 1 cut(s) 159
AfiI CCNNNNNNNGG 1 cut(s) 83
AflIII ACRYGT 1 cut(s) 466
AgsI TTSAA 4 cut(s) 178, 289, 324, 360
AjnI CCWGG 3 cut(s) 39, 151, 274
AluBI AGCT 6 cut(s) 34, 80, 102, 266, 346, 437
AluI AGCT 6 cut(s) 34, 80, 102, 266, 346, 437
Alw26I GTCTC 3 cut(s) 30, 64, 197
AlwI GGATC 1 cut(s) 147
AoxI GGCC 1 cut(s) 277
ApeKI GCWGC 2 cut(s) 31, 257
ApoI RAATTY 1 cut(s) 211
AspS9I GGNCC 2 cut(s) 181, 473
AsuHPI GGTGA 1 cut(s) 28
AvaII GGWCC 2 cut(s) 181, 473
BbvI GCAGC 2 cut(s) 43, 244
BccI CCATC 1 cut(s) 317
BceAI ACGGC 2 cut(s) 106, 245
BcgI CGANNNNNNTGC 2 cut(s) 98, 132
BciT130I CCWGG 3 cut(s) 41, 153, 276
BciVI GTATCC 1 cut(s) 80
BcoDI GTCTC 3 cut(s) 30, 64, 197
BfaI CTAG 1 cut(s) 347
BfmI CTRYAG 1 cut(s) 29
BfuI GTATCC 1 cut(s) 80
BisI GCNGC 2 cut(s) 32, 258
BlsI GCNGC 2 cut(s) 33, 259
BmcAI AGTACT 1 cut(s) 159
Bme1390I CCNGG 3 cut(s) 41, 153, 276
Bme18I GGWCC 2 cut(s) 181, 473
BmgT120I GGNCC 2 cut(s) 181, 473
BmiI GGNNCC 2 cut(s) 183, 475
BmrFI CCNGG 3 cut(s) 41, 153, 276
BmrI ACTGGG 1 cut(s) 432
BmsI GCATC 1 cut(s) 138
BmuI ACTGGG 1 cut(s) 432
BplI GAGNNNNNCTC 2 cut(s) 44, 76
BsaJI CCNNGG 1 cut(s) 39
BsaXI ACNNNNNCTCC 2 cut(s) 147, 177
Bsc4I CCNNNNNNNGG 1 cut(s) 83
Bse1I ACTGG 2 cut(s) 141, 427
BseBI CCWGG 3 cut(s) 41, 153, 276
BseDI CCNNGG 1 cut(s) 39
BseGI GGATG 1 cut(s) 129
BseLI CCNNNNNNNGG 1 cut(s) 83
BseNI ACTGG 2 cut(s) 141, 427
BseXI GCAGC 2 cut(s) 43, 244
BshFI GGCC 1 cut(s) 279
BslFI GGGAC 2 cut(s) 167, 459
BslI CCNNNNNNNGG 1 cut(s) 83
BsmAI GTCTC 3 cut(s) 30, 64, 197
BsmBI CGTCTC 2 cut(s) 64, 197
BsmFI GGGAC 2 cut(s) 167, 459
BsnI GGCC 1 cut(s) 279
Bsp143I GATC 1 cut(s) 139
BspANI GGCC 1 cut(s) 279
BspHI TCATGA 1 cut(s) 337
BspLI GGNNCC 2 cut(s) 183, 475
BspMAI CTGCAG 1 cut(s) 33
BspPI GGATC 1 cut(s) 147
BspQI GCTCTTC 1 cut(s) 126
BsrI ACTGG 2 cut(s) 141, 427
BssECI CCNNGG 1 cut(s) 39
BssMI GATC 1 cut(s) 139
Bst2UI CCWGG 3 cut(s) 41, 153, 276
Bst6I CTCTTC 2 cut(s) 39, 126
BstF5I GGATG 1 cut(s) 129
BstKTI GATC 1 cut(s) 142
BstMAI GTCTC 3 cut(s) 30, 64, 197
BstMBI GATC 1 cut(s) 139
BstMWI GCNNNNNNNGC 3 cut(s) 99, 224, 263
BstNI CCWGG 3 cut(s) 41, 153, 276
BstNSI RCATGY 1 cut(s) 470
BstSCI CCNGG 3 cut(s) 39, 151, 274
BstSFI CTRYAG 1 cut(s) 29
BstV1I GCAGC 2 cut(s) 43, 244
BsuI GTATCC 1 cut(s) 80
BsuRI GGCC 1 cut(s) 279
BtsCI GGATG 1 cut(s) 129
CciI TCATGA 1 cut(s) 337
Cfr13I GGNCC 2 cut(s) 181, 473
Csp6I GTAC 1 cut(s) 158
CviAII CATG 2 cut(s) 338, 467
CviJI RGCY 9 cut(s) 34, 80, 102, 113, 218, 266, 279, 346, 437
CviKI_1 RGCY 9 cut(s) 34, 80, 102, 113, 218, 266, 279, 346, 437
CviQI GTAC 1 cut(s) 158
DpnI GATC 1 cut(s) 141
DpnII GATC 1 cut(s) 139
Eam1104I CTCTTC 2 cut(s) 39, 126
EarI CTCTTC 2 cut(s) 39, 126
Eco47I GGWCC 2 cut(s) 181, 473
Eco57I CTGAAG 1 cut(s) 459
EcoO109I RGGNCCY 1 cut(s) 181
EcoRII CCWGG 3 cut(s) 39, 151, 274
Esp3I CGTCTC 2 cut(s) 64, 197
FaeI CATG 2 cut(s) 341, 470
FaiI YATR 5 cut(s) 248, 270, 339, 434, 468
FaqI GGGAC 2 cut(s) 167, 459
FatI CATG 2 cut(s) 337, 466
FblI GTMKAC 1 cut(s) 445
Fnu4HI GCNGC 2 cut(s) 32, 258
FokI GGATG 1 cut(s) 116
Fsp4HI GCNGC 2 cut(s) 32, 258
FspBI CTAG 1 cut(s) 347
GluI GCNGC 2 cut(s) 32, 258
HaeIII GGCC 1 cut(s) 279
Hin1II CATG 2 cut(s) 341, 470
HincII GTYRAC 1 cut(s) 446
HindII GTYRAC 1 cut(s) 446
HinfI GANTC 4 cut(s) 47, 53, 95, 144
HphI GGTGA 1 cut(s) 28
Hpy166II GTNNAC 4 cut(s) 19, 301, 446, 464
Hpy188I TCNGA 3 cut(s) 52, 134, 491
Hpy188III TCNNGA 3 cut(s) 338, 360, 390
Hpy8I GTNNAC 4 cut(s) 19, 301, 446, 464
Hpy99I CGWCG 1 cut(s) 167
HpyAV CCTTC 3 cut(s) 7, 195, 434
HpyCH4V TGCA 3 cut(s) 31, 227, 233
HpyF10VI GCNNNNNNNGC 3 cut(s) 99, 224, 263
Hsp92II CATG 2 cut(s) 341, 470
Kzo9I GATC 1 cut(s) 139
LguI GCTCTTC 1 cut(s) 126
Lsp1109I GCAGC 2 cut(s) 43, 244
LweI GCATC 1 cut(s) 138
MaeI CTAG 1 cut(s) 347
MalI GATC 1 cut(s) 141
MboI GATC 1 cut(s) 139
MboII GAAGA 2 cut(s) 56, 113
MfeI CAATTG 1 cut(s) 228
MluCI AATT 3 cut(s) 211, 228, 429
MlyI GAGTC 4 cut(s) 56, 62, 104, 153
MmeI TCCRAC 1 cut(s) 157
MnlI CCTC 4 cut(s) 3, 103, 119, 374
MspR9I CCNGG 3 cut(s) 41, 153, 276
MunI CAATTG 1 cut(s) 228
MvaI CCWGG 3 cut(s) 41, 153, 276
MwoI GCNNNNNNNGC 3 cut(s) 99, 224, 263
NdeII GATC 1 cut(s) 139
NlaIII CATG 2 cut(s) 341, 470
NlaIV GGNNCC 2 cut(s) 183, 475
NspI RCATGY 1 cut(s) 470
PagI TCATGA 1 cut(s) 337
PciI ACATGT 1 cut(s) 466
PciSI GCTCTTC 1 cut(s) 126
PcsI WCGNNNNNNNCGW 1 cut(s) 130
PkrI GCNGC 2 cut(s) 33, 259
PleI GAGTC 4 cut(s) 55, 61, 103, 152
PpsI GAGTC 4 cut(s) 55, 61, 103, 152
PpuMI RGGWCCY 1 cut(s) 181
PscI ACATGT 1 cut(s) 466
Psp5II RGGWCCY 1 cut(s) 181
Psp6I CCWGG 3 cut(s) 39, 151, 274
PspGI CCWGG 3 cut(s) 39, 151, 274
PspN4I GGNNCC 2 cut(s) 183, 475
PspPI GGNCC 2 cut(s) 181, 473
PspPPI RGGWCCY 1 cut(s) 181
PsrI GAACNNNNNNTAC 4 cut(s) 141, 173, 255, 287
PstI CTGCAG 1 cut(s) 33
RsaI GTAC 1 cut(s) 159
RsaNI GTAC 1 cut(s) 158
SalI GTCGAC 1 cut(s) 444
SapI GCTCTTC 1 cut(s) 126
SatI GCNGC 2 cut(s) 32, 258
Sau3AI GATC 1 cut(s) 139
Sau96I GGNCC 2 cut(s) 181, 473
ScaI AGTACT 1 cut(s) 159
SchI GAGTC 4 cut(s) 56, 62, 104, 153
ScrFI CCNGG 3 cut(s) 41, 153, 276
SfaNI GCATC 1 cut(s) 138
SfcI CTRYAG 1 cut(s) 29
SinI GGWCC 2 cut(s) 181, 473
Sse9I AATT 3 cut(s) 211, 228, 429
SspMI CTAG 1 cut(s) 347
StyD4I CCNGG 3 cut(s) 39, 151, 274
TaqI TCGA 5 cut(s) 98, 124, 142, 147, 445
TasI AATT 3 cut(s) 211, 228, 429
TatI WGTACW 1 cut(s) 157
TseI GCWGC 2 cut(s) 31, 257
TspDTI ATGAA 2 cut(s) 326, 441
TspGWI ACGGA 1 cut(s) 46
VpaK11BI GGWCC 2 cut(s) 181, 473
XapI RAATTY 1 cut(s) 211
XceI RCATGY 1 cut(s) 470
XmiI GTMKAC 1 cut(s) 445
XspI CTAG 1 cut(s) 347
ZrmI AGTACT 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.