Prupe.6G062000_v2.0.a1

Acyl-coenzyme A thioesterase 13-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000478
Physical Location & Seq
Forward (+)
4281885 .. 4287815
5931 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G062000.1

Sequence Viewer

Length: 486 bp
ATGGAGACGGAGAAGAAGGTGAACAAGTCTCTGGACGTGACCGAGGACGAGTCAGAGGCCGTGTCGCGACTCGTCGTTCCAGTTATCCCAACCGGCGGGGTGAGCTTCTACGATGCTTTTGTTGTCAGAGGCATCCGAGTCAACCGAGTCGAACCCGGACTGGTCGTCTGTACTTTGAAGGTCCCTCCCCGCTTCACCGATAGAGGTGGAAATTTGGCTAATGGTGCTATTGCAAACCTTGTTGATGTACTTGGTTTTTGCACAGCTTATGTTCCGGGCCACCCTATGAATGTTTCTGTGGACATTTCCATCTCCTACATGTCAACTGCCAAGCTTCATGATGAGTTAGAGATAACTTCAAGACTGTTAGGACGGATAGGACGTTACTCTGGAACAATTGTCATTTTGAGAAATAAAACAACTGGGGAGACAATAGCTGAAGGTCGACAGTCATTCTTTTCTTCTCGTCCCATTGCCAAACTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
4HBT

Protein Analysis

162

Amino Acids

17.48

Weight (kDa)

8.62

Isoelectric Point (pI)

41.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000478)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29590
fragaria_vesca FvH4_3g37930 FvH4_3g37930 FvH4_3g37970 FvH4_3g37990 FvH4_3g37990 FvH4_3g38000 FvH4_3g38010 FvH4_3g38050 FvH4_3g38060
malus_domestica MD03G1077300.v1.1 MD03G1077400.v1.1 MD03G1077500.v1.1 MD08G1031500.v1.1 MD11G1081500.v1.1 MD11G1081600.v1.1 MD11G1081700.v1.1 MD11G1081800.v1.1 MD11G1081900.v1.1
prunus_persica Prupe.6G061800_v2.0.a1 Prupe.6G061900_v2.0.a1 Prupe.6G062000_v2.0.a1 Prupe.6G062000_v2.0.a1 Prupe.6G062100_v2.0.a1 Prupe.6G062100_v2.0.a1 Prupe.6G062200_v2.0.a1 Prupe.6G062300_v2.0.a1
pyrus_communis pycom03g06110 pycom03g06120 pycom03g06130 pycom11g06960 pycom11g06970 pycom11g06980 pycom11g07020
rosa_chinensis RchiOBHm_Chr5g0068361 RchiOBHm_Chr5g0068381 RchiOBHm_Chr5g0068391 RchiOBHm_Chr5g0068401 RchiOBHm_Chr5g0068411 RchiOBHm_Chr5g0068441
rosa_laevigata RLG00000035969 RLG00000035971 RLG00000035972 RLG00000035973 RLG00000035974
rosa_multiflora Rmu_sc0001418.1_g000002 Rmu_sc0003450.1_g000002 Rmu_sc0003450.1_g000003 Rmu_sc0003450.1_g000004 Rmu_sc0003450.1_g000007 Rmu_sc0005087.1_g000001 Rmu_sc0006054.1_g000001
rosa_roxburghii Rroxscaffold_1G00012370 Rroxscaffold_1G00012380 Rroxscaffold_1G00012390 Rroxscaffold_1G00012400 Rroxscaffold_1G00012420 Rroxscaffold_1G00013110 Rroxscaffold_1G00013120 Rroxscaffold_1G00013130 Rroxscaffold_1G00013150 Rroxscaffold_1G00013160
rosa_rugosa Rorug05G0389200 Rorug05G0389400 Rorug05G0389500 Rorug05G0389600 Rorug05G0389600
rosa_samantha Rh5AG447900 Rh5AG448100 Rh5AG448200 Rh5AG448300 Rh5AG448400 Rh5BG465700 Rh5BG465900 Rh5BG466200 Rh5BG466300 Rh5BG466700 Rh5CG487500 Rh5CG487800 Rh5CG487900 Rh5CG488300 Rh5DG479500 Rh5DG479700 Rh5DG479800 Rh5DG480100
rosa_wichuraiana Rw5G041800 Rw5G041830 Rw5G041840 Rw5G041850 Rw5G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 445
AccII CGCG 1 cut(s) 67
AciI CCGC 2 cut(s) 96, 190
AcsI RAATTY 1 cut(s) 211
AcuI CTGAAG 1 cut(s) 459
AfaI GTAC 2 cut(s) 172, 249
AfiI CCNNNNNNNGG 1 cut(s) 95
AflIII ACRYGT 1 cut(s) 318
AgsI TTSAA 2 cut(s) 178, 360
AhdI GACNNNNNGTC 1 cut(s) 164
AjiI CACGTC 1 cut(s) 37
AluBI AGCT 4 cut(s) 105, 266, 334, 437
AluI AGCT 4 cut(s) 105, 266, 334, 437
Alw26I GTCTC 2 cut(s) 33, 422
AoxI GGCC 2 cut(s) 57, 277
ApoI RAATTY 1 cut(s) 211
AspS9I GGNCC 2 cut(s) 181, 277
AsuC2I CCSGG 2 cut(s) 156, 276
AsuHPI GGTGA 3 cut(s) 31, 112, 187
AvaII GGWCC 1 cut(s) 181
BccI CCATC 1 cut(s) 317
BceAI ACGGC 1 cut(s) 44
BcnI CCSGG 2 cut(s) 156, 276
BcoDI GTCTC 2 cut(s) 33, 422
Bme1390I CCNGG 2 cut(s) 156, 276
Bme18I GGWCC 1 cut(s) 181
BmeRI GACNNNNNGTC 1 cut(s) 164
BmgBI CACGTC 1 cut(s) 37
BmgT120I GGNCC 2 cut(s) 181, 277
BmiI GGNNCC 1 cut(s) 183
BmrFI CCNGG 2 cut(s) 156, 276
BmrI ACTGGG 1 cut(s) 432
BmsI GCATC 2 cut(s) 103, 141
BmuI ACTGGG 1 cut(s) 432
BpuMI CCSGG 2 cut(s) 156, 276
BsaJI CCNNGG 1 cut(s) 42
Bsc4I CCNNNNNNNGG 1 cut(s) 95
Bse118I RCCGGY 1 cut(s) 92
Bse1I ACTGG 3 cut(s) 80, 165, 427
Bse3DI GCAATG 1 cut(s) 471
BseDI CCNNGG 1 cut(s) 42
BseGI GGATG 1 cut(s) 132
BseLI CCNNNNNNNGG 1 cut(s) 95
BseMI GCAATG 1 cut(s) 471
BseNI ACTGG 3 cut(s) 80, 165, 427
Bsh1236I CGCG 1 cut(s) 67
BshFI GGCC 2 cut(s) 59, 279
BsiSI CCGG 3 cut(s) 93, 156, 275
BslFI GGGAC 2 cut(s) 167, 453
BslI CCNNNNNNNGG 1 cut(s) 95
BsmAI GTCTC 2 cut(s) 33, 422
BsmFI GGGAC 2 cut(s) 167, 453
BsnI GGCC 2 cut(s) 59, 279
Bsp68I TCGCGA 1 cut(s) 67
BspACI CCGC 2 cut(s) 96, 190
BspANI GGCC 2 cut(s) 59, 279
BspFNI CGCG 1 cut(s) 67
BspHI TCATGA 1 cut(s) 337
BspLI GGNNCC 1 cut(s) 183
BsrDI GCAATG 1 cut(s) 471
BsrFI RCCGGY 1 cut(s) 92
BsrI ACTGG 3 cut(s) 80, 165, 427
BssAI RCCGGY 1 cut(s) 92
BssECI CCNNGG 1 cut(s) 42
Bst4CI ACNGT 2 cut(s) 366, 450
BstF5I GGATG 1 cut(s) 132
BstFNI CGCG 1 cut(s) 67
BstMAI GTCTC 2 cut(s) 33, 422
BstMWI GCNNNNNNNGC 2 cut(s) 102, 224
BstNSI RCATGY 1 cut(s) 322
BstSCI CCNGG 2 cut(s) 154, 274
BstUI CGCG 1 cut(s) 67
BsuRI GGCC 2 cut(s) 59, 279
BtrI CACGTC 1 cut(s) 37
BtsCI GGATG 1 cut(s) 132
BtuMI TCGCGA 1 cut(s) 67
CciI TCATGA 1 cut(s) 337
Cfr10I RCCGGY 1 cut(s) 92
Cfr13I GGNCC 2 cut(s) 181, 277
Csp6I GTAC 2 cut(s) 171, 248
CviAII CATG 2 cut(s) 319, 338
CviJI RGCY 7 cut(s) 59, 105, 218, 266, 279, 334, 437
CviKI_1 RGCY 7 cut(s) 59, 105, 218, 266, 279, 334, 437
CviQI GTAC 2 cut(s) 171, 248
DriI GACNNNNNGTC 1 cut(s) 164
Eam1105I GACNNNNNGTC 1 cut(s) 164
Eco47I GGWCC 1 cut(s) 181
Eco57I CTGAAG 1 cut(s) 459
EcoO109I RGGNCCY 1 cut(s) 181
FaeI CATG 2 cut(s) 322, 341
FaiI YATR 4 cut(s) 270, 287, 320, 339
FaqI GGGAC 2 cut(s) 167, 453
FatI CATG 2 cut(s) 318, 337
FauI CCCGC 2 cut(s) 89, 197
FblI GTMKAC 1 cut(s) 445
FokI GGATG 1 cut(s) 119
HaeIII GGCC 2 cut(s) 59, 279
HapII CCGG 3 cut(s) 93, 156, 275
Hin1II CATG 2 cut(s) 322, 341
HincII GTYRAC 3 cut(s) 142, 324, 446
HindII GTYRAC 3 cut(s) 142, 324, 446
HindIII AAGCTT 1 cut(s) 332
HinfI GANTC 4 cut(s) 50, 69, 138, 147
HpaII CCGG 3 cut(s) 93, 156, 275
HphI GGTGA 3 cut(s) 31, 112, 187
Hpy166II GTNNAC 5 cut(s) 22, 142, 301, 324, 446
Hpy188I TCNGA 4 cut(s) 55, 128, 137, 485
Hpy188III TCNNGA 5 cut(s) 32, 66, 338, 360, 390
Hpy8I GTNNAC 5 cut(s) 22, 142, 301, 324, 446
Hpy99I CGWCG 1 cut(s) 77
HpyAV CCTTC 3 cut(s) 10, 172, 434
HpyCH4III ACNGT 2 cut(s) 366, 450
HpyCH4IV ACGT 2 cut(s) 36, 382
HpyCH4V TGCA 2 cut(s) 233, 261
HpyF10VI GCNNNNNNNGC 2 cut(s) 102, 224
HpySE526I ACGT 2 cut(s) 36, 382
Hsp92II CATG 2 cut(s) 322, 341
LpnPI CCDG 8 cut(s) 17, 93, 106, 146, 169, 288, 375, 408
LweI GCATC 2 cut(s) 103, 141
MaeII ACGT 2 cut(s) 36, 382
MaeIII GTNAC 2 cut(s) 37, 383
MboII GAAGA 2 cut(s) 25, 453
MfeI CAATTG 1 cut(s) 396
MluCI AATT 2 cut(s) 211, 396
MlyI GAGTC 4 cut(s) 59, 63, 147, 156
MnlI CCTC 5 cut(s) 37, 49, 122, 195, 197
MspI CCGG 3 cut(s) 93, 156, 275
MspR9I CCNGG 2 cut(s) 156, 276
MunI CAATTG 1 cut(s) 396
MvnI CGCG 1 cut(s) 67
MwoI GCNNNNNNNGC 2 cut(s) 102, 224
NciI CCSGG 2 cut(s) 156, 276
NlaIII CATG 2 cut(s) 322, 341
NlaIV GGNNCC 1 cut(s) 183
NmuCI GTSAC 1 cut(s) 37
NruI TCGCGA 1 cut(s) 67
NspI RCATGY 1 cut(s) 322
PagI TCATGA 1 cut(s) 337
PciI ACATGT 1 cut(s) 318
PcsI WCGNNNNNNNCGW 1 cut(s) 379
PleI GAGTC 4 cut(s) 58, 63, 146, 155
PpsI GAGTC 4 cut(s) 58, 63, 146, 155
PpuMI RGGWCCY 1 cut(s) 181
PscI ACATGT 1 cut(s) 318
Psp5II RGGWCCY 1 cut(s) 181
PspN4I GGNNCC 1 cut(s) 183
PspPI GGNCC 2 cut(s) 181, 277
PspPPI RGGWCCY 1 cut(s) 181
RruI TCGCGA 1 cut(s) 67
RsaI GTAC 2 cut(s) 172, 249
RsaNI GTAC 2 cut(s) 171, 248
SalI GTCGAC 1 cut(s) 444
Sau96I GGNCC 2 cut(s) 181, 277
SchI GAGTC 4 cut(s) 59, 63, 147, 156
ScrFI CCNGG 2 cut(s) 156, 276
SfaNI GCATC 2 cut(s) 103, 141
SinI GGWCC 1 cut(s) 181
Sse9I AATT 2 cut(s) 211, 396
SsiI CCGC 2 cut(s) 96, 190
StyD4I CCNGG 2 cut(s) 154, 274
TaaI ACNGT 2 cut(s) 366, 450
TaiI ACGT 2 cut(s) 39, 385
TaqI TCGA 2 cut(s) 150, 445
TaqII GACCGA 1 cut(s) 56
TasI AATT 2 cut(s) 211, 396
TatI WGTACW 2 cut(s) 170, 247
TseFI GTSAC 1 cut(s) 37
Tsp45I GTSAC 1 cut(s) 37
TspDTI ATGAA 2 cut(s) 302, 326
TspGWI ACGGA 2 cut(s) 23, 388
VpaK11BI GGWCC 1 cut(s) 181
XapI RAATTY 1 cut(s) 211
XceI RCATGY 1 cut(s) 322
XmiI GTMKAC 1 cut(s) 445
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.