MD11G1081700.v1.1

Acyl-coenzyme A thioesterase 13-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0000478
Physical Location & Seq
Forward (+)
6967150 .. 6969807
2658 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1081700.v1.1.491

Sequence Viewer

Length: 507 bp
ATGGATCCGAATGAGCAAGGTAATACTAATATGGGGAGGGCGAAGAGGTTTCTGGGGCTGACTCAGGACGAGTCAGAGGCCGTGTCGCGACTCGCGGTTCCAGAACAGGCAGCAGGCGCGGGAAAGAGCTTCTATGACGCCTTCGCTGTTGCGGGAATCCGAGTCGACCGAGTCGAACCCGGACTCGTCGTCTGTTCCTTCAAGGTCCCTCCCCGCCTCACCGATAGAAGTGGAAACTTGGCAAATGGTGCAATTGCAAGCCTTGTCGATCTTGTTGGAATTTCTCTGGAATTTGGCGAGGGACTCCTTAGTGTTTCAATCGACATGTCTATCTCGTATTTCTCTACAGCGAAGATTAATGACGAGCTAGAGATCACCTCAAAAAGAATAGGAAGAAGAGGAGGTTATACGGGAACGGTGGTAGTTTTGAGAAACAAAACAACGGGGGAGATTATTGCCGAAGGTCGACATTCGTTGCTCCGTTCACGTCGTTCTAGCAAACTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
4HBT

Protein Analysis

169

Amino Acids

18.02

Weight (kDa)

9.2

Isoelectric Point (pI)

41.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000478)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29590
fragaria_vesca FvH4_3g37930 FvH4_3g37930 FvH4_3g37970 FvH4_3g37990 FvH4_3g37990 FvH4_3g38000 FvH4_3g38010 FvH4_3g38050 FvH4_3g38060
malus_domestica MD03G1077300.v1.1 MD03G1077400.v1.1 MD03G1077500.v1.1 MD08G1031500.v1.1 MD11G1081500.v1.1 MD11G1081600.v1.1 MD11G1081700.v1.1 MD11G1081800.v1.1 MD11G1081900.v1.1
prunus_persica Prupe.6G061800_v2.0.a1 Prupe.6G061900_v2.0.a1 Prupe.6G062000_v2.0.a1 Prupe.6G062000_v2.0.a1 Prupe.6G062100_v2.0.a1 Prupe.6G062100_v2.0.a1 Prupe.6G062200_v2.0.a1 Prupe.6G062300_v2.0.a1
pyrus_communis pycom03g06110 pycom03g06120 pycom03g06130 pycom11g06960 pycom11g06970 pycom11g06980 pycom11g07020
rosa_chinensis RchiOBHm_Chr5g0068361 RchiOBHm_Chr5g0068381 RchiOBHm_Chr5g0068391 RchiOBHm_Chr5g0068401 RchiOBHm_Chr5g0068411 RchiOBHm_Chr5g0068441
rosa_laevigata RLG00000035969 RLG00000035971 RLG00000035972 RLG00000035973 RLG00000035974
rosa_multiflora Rmu_sc0001418.1_g000002 Rmu_sc0003450.1_g000002 Rmu_sc0003450.1_g000003 Rmu_sc0003450.1_g000004 Rmu_sc0003450.1_g000007 Rmu_sc0005087.1_g000001 Rmu_sc0006054.1_g000001
rosa_roxburghii Rroxscaffold_1G00012370 Rroxscaffold_1G00012380 Rroxscaffold_1G00012390 Rroxscaffold_1G00012400 Rroxscaffold_1G00012420 Rroxscaffold_1G00013110 Rroxscaffold_1G00013120 Rroxscaffold_1G00013130 Rroxscaffold_1G00013150 Rroxscaffold_1G00013160
rosa_rugosa Rorug05G0389200 Rorug05G0389400 Rorug05G0389500 Rorug05G0389600 Rorug05G0389600
rosa_samantha Rh5AG447900 Rh5AG448100 Rh5AG448200 Rh5AG448300 Rh5AG448400 Rh5BG465700 Rh5BG465900 Rh5BG466200 Rh5BG466300 Rh5BG466700 Rh5CG487500 Rh5CG487800 Rh5CG487900 Rh5CG488300 Rh5DG479500 Rh5DG479700 Rh5DG479800 Rh5DG480100
rosa_wichuraiana Rw5G041800 Rw5G041830 Rw5G041840 Rw5G041850 Rw5G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 165, 466
AccII CGCG 3 cut(s) 88, 95, 119
AciI CCGC 4 cut(s) 95, 119, 152, 214
AclWI GGATC 1 cut(s) 12
AcsI RAATTY 2 cut(s) 279, 290
AcyI GRCGYC 1 cut(s) 138
AflIII ACRYGT 1 cut(s) 324
AgsI TTSAA 2 cut(s) 202, 318
AhdI GACNNNNNGTC 1 cut(s) 188
AjiI CACGTC 1 cut(s) 488
AluBI AGCT 2 cut(s) 129, 367
AluI AGCT 2 cut(s) 129, 367
AlwI GGATC 1 cut(s) 12
AoxI GGCC 1 cut(s) 78
ApeKI GCWGC 1 cut(s) 110
ApoI RAATTY 2 cut(s) 279, 290
AseI ATTAAT 1 cut(s) 357
AspLEI GCGC 1 cut(s) 119
AspS9I GGNCC 1 cut(s) 205
AsuC2I CCSGG 1 cut(s) 180
AsuHPI GGTGA 2 cut(s) 211, 367
AvaII GGWCC 1 cut(s) 205
BamHI GGATCC 1 cut(s) 4
BbvI GCAGC 1 cut(s) 122
BceAI ACGGC 1 cut(s) 65
BcnI CCSGG 1 cut(s) 180
BfaI CTAG 2 cut(s) 368, 495
BfmI CTRYAG 1 cut(s) 345
BisI GCNGC 1 cut(s) 111
BlsI GCNGC 1 cut(s) 112
Bme1390I CCNGG 1 cut(s) 180
Bme18I GGWCC 1 cut(s) 205
BmeRI GACNNNNNGTC 1 cut(s) 188
BmgBI CACGTC 1 cut(s) 488
BmgT120I GGNCC 1 cut(s) 205
BmiI GGNNCC 3 cut(s) 6, 99, 207
BmrFI CCNGG 1 cut(s) 180
BplI GAGNNNNNCTC 2 cut(s) 362, 394
BpuMI CCSGG 1 cut(s) 180
BsaHI GRCGYC 1 cut(s) 138
BseMII CTCAG 1 cut(s) 77
BseRI GAGGAG 1 cut(s) 414
BseXI GCAGC 1 cut(s) 122
Bsh1236I CGCG 3 cut(s) 88, 95, 119
Bsh1285I CGRYCG 1 cut(s) 169
BshFI GGCC 1 cut(s) 80
BsiEI CGRYCG 1 cut(s) 169
BsiSI CCGG 1 cut(s) 180
BslFI GGGAC 2 cut(s) 191, 315
BsmFI GGGAC 2 cut(s) 191, 315
BsnI GGCC 1 cut(s) 80
Bsp143I GATC 3 cut(s) 4, 268, 372
Bsp68I TCGCGA 1 cut(s) 88
BspACI CCGC 4 cut(s) 95, 119, 152, 214
BspANI GGCC 1 cut(s) 80
BspCNI CTCAG 1 cut(s) 76
BspFNI CGCG 3 cut(s) 88, 95, 119
BspLI GGNNCC 3 cut(s) 6, 99, 207
BspPI GGATC 1 cut(s) 12
BssMI GATC 3 cut(s) 4, 268, 372
BssNI GRCGYC 1 cut(s) 138
Bst4CI ACNGT 1 cut(s) 418
Bst6I CTCTTC 2 cut(s) 38, 391
BstACI GRCGYC 1 cut(s) 138
BstAPI GCANNNNNTGC 1 cut(s) 248
BstC8I GCNNGC 2 cut(s) 115, 259
BstDEI CTNAG 2 cut(s) 63, 308
BstFNI CGCG 3 cut(s) 88, 95, 119
BstHHI GCGC 1 cut(s) 119
BstKTI GATC 3 cut(s) 7, 271, 375
BstMBI GATC 3 cut(s) 4, 268, 372
BstMCI CGRYCG 1 cut(s) 169
BstMWI GCNNNNNNNGC 2 cut(s) 116, 248
BstNSI RCATGY 1 cut(s) 328
BstSCI CCNGG 1 cut(s) 178
BstSFI CTRYAG 1 cut(s) 345
BstUI CGCG 3 cut(s) 88, 95, 119
BstV1I GCAGC 1 cut(s) 122
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 1 cut(s) 80
BtrI CACGTC 1 cut(s) 488
BtuMI TCGCGA 1 cut(s) 88
Cac8I GCNNGC 2 cut(s) 115, 259
CfoI GCGC 1 cut(s) 119
Cfr13I GGNCC 1 cut(s) 205
CseI GACGC 1 cut(s) 146
CviAII CATG 1 cut(s) 325
CviJI RGCY 5 cut(s) 58, 80, 129, 261, 367
CviKI_1 RGCY 5 cut(s) 58, 80, 129, 261, 367
DdeI CTNAG 2 cut(s) 63, 308
DpnI GATC 3 cut(s) 6, 270, 374
DpnII GATC 3 cut(s) 4, 268, 372
DriI GACNNNNNGTC 1 cut(s) 188
Eam1104I CTCTTC 2 cut(s) 38, 391
Eam1105I GACNNNNNGTC 1 cut(s) 188
EarI CTCTTC 2 cut(s) 38, 391
Eco47I GGWCC 1 cut(s) 205
EcoO109I RGGNCCY 1 cut(s) 205
FaeI CATG 1 cut(s) 328
FaiI YATR 4 cut(s) 32, 135, 326, 408
FaqI GGGAC 2 cut(s) 191, 315
FatI CATG 1 cut(s) 324
FauI CCCGC 3 cut(s) 112, 145, 221
FblI GTMKAC 2 cut(s) 165, 466
Fnu4HI GCNGC 1 cut(s) 111
Fsp4HI GCNGC 1 cut(s) 111
FspBI CTAG 2 cut(s) 368, 495
GlaI GCGC 1 cut(s) 118
GluI GCNGC 1 cut(s) 111
HaeIII GGCC 1 cut(s) 80
HapII CCGG 1 cut(s) 180
HgaI GACGC 1 cut(s) 146
HhaI GCGC 1 cut(s) 119
Hin1I GRCGYC 1 cut(s) 138
Hin1II CATG 1 cut(s) 328
Hin6I GCGC 1 cut(s) 117
HinP1I GCGC 1 cut(s) 117
HincII GTYRAC 2 cut(s) 166, 467
HindII GTYRAC 2 cut(s) 166, 467
HinfI GANTC 8 cut(s) 61, 71, 90, 156, 162, 171, 183, 303
HpaII CCGG 1 cut(s) 180
HphI GGTGA 2 cut(s) 211, 367
Hpy166II GTNNAC 3 cut(s) 166, 467, 485
Hpy188I TCNGA 4 cut(s) 9, 76, 161, 506
Hpy188III TCNNGA 4 cut(s) 65, 87, 101, 287
Hpy8I GTNNAC 3 cut(s) 166, 467, 485
Hpy99I CGWCG 2 cut(s) 191, 492
HpyAV CCTTC 3 cut(s) 151, 208, 455
HpyCH4III ACNGT 1 cut(s) 418
HpyCH4IV ACGT 1 cut(s) 487
HpyCH4V TGCA 2 cut(s) 251, 257
HpyF10VI GCNNNNNNNGC 2 cut(s) 116, 248
HpyF3I CTNAG 2 cut(s) 63, 308
HpySE526I ACGT 1 cut(s) 487
Hsp92I GRCGYC 1 cut(s) 138
Hsp92II CATG 1 cut(s) 328
HspAI GCGC 1 cut(s) 117
Kzo9I GATC 3 cut(s) 4, 268, 372
LmnI GCTCC 1 cut(s) 483
LpnPI CCDG 7 cut(s) 38, 50, 92, 99, 114, 193, 272
Lsp1109I GCAGC 1 cut(s) 122
MaeI CTAG 2 cut(s) 368, 495
MaeII ACGT 1 cut(s) 487
MalI GATC 3 cut(s) 6, 270, 374
MboI GATC 3 cut(s) 4, 268, 372
MboII GAAGA 4 cut(s) 55, 364, 405, 408
MfeI CAATTG 1 cut(s) 252
MflI RGATCY 1 cut(s) 4
MluCI AATT 3 cut(s) 252, 279, 290
MlyI GAGTC 7 cut(s) 55, 80, 84, 171, 177, 180, 297
MmeI TCCRAC 1 cut(s) 256
MnlI CCTC 9 cut(s) 30, 39, 70, 219, 227, 292, 388, 392, 395
MseI TTAA 1 cut(s) 357
MspI CCGG 1 cut(s) 180
MspR9I CCNGG 1 cut(s) 180
MunI CAATTG 1 cut(s) 252
MvnI CGCG 3 cut(s) 88, 95, 119
MwoI GCNNNNNNNGC 2 cut(s) 116, 248
NciI CCSGG 1 cut(s) 180
NdeII GATC 3 cut(s) 4, 268, 372
NlaIII CATG 1 cut(s) 328
NlaIV GGNNCC 3 cut(s) 6, 99, 207
NruI TCGCGA 1 cut(s) 88
NspI RCATGY 1 cut(s) 328
PciI ACATGT 1 cut(s) 324
PcsI WCGNNNNNNNCGW 1 cut(s) 171
PfeI GAWTC 1 cut(s) 156
PflFI GACNNNGTC 1 cut(s) 170
PkrI GCNGC 1 cut(s) 112
PleI GAGTC 7 cut(s) 55, 79, 84, 170, 177, 179, 297
PpsI GAGTC 7 cut(s) 55, 79, 84, 170, 177, 179, 297
PpuMI RGGWCCY 1 cut(s) 205
PscI ACATGT 1 cut(s) 324
PshBI ATTAAT 1 cut(s) 357
Psp5II RGGWCCY 1 cut(s) 205
PspN4I GGNNCC 3 cut(s) 6, 99, 207
PspPI GGNCC 1 cut(s) 205
PspPPI RGGWCCY 1 cut(s) 205
PsuI RGATCY 1 cut(s) 4
PsyI GACNNNGTC 1 cut(s) 170
RruI TCGCGA 1 cut(s) 88
SalI GTCGAC 2 cut(s) 164, 465
SaqAI TTAA 1 cut(s) 357
SatI GCNGC 1 cut(s) 111
Sau3AI GATC 3 cut(s) 4, 268, 372
Sau96I GGNCC 1 cut(s) 205
SchI GAGTC 7 cut(s) 55, 80, 84, 171, 177, 180, 297
ScrFI CCNGG 1 cut(s) 180
SetI ASST 9 cut(s) 22, 50, 131, 207, 369, 380, 406, 466, 490
SfcI CTRYAG 1 cut(s) 345
SinI GGWCC 1 cut(s) 205
Sse9I AATT 3 cut(s) 252, 279, 290
SsiI CCGC 4 cut(s) 95, 119, 152, 214
SspMI CTAG 2 cut(s) 368, 495
StyD4I CCNGG 1 cut(s) 178
TaaI ACNGT 1 cut(s) 418
TaiI ACGT 1 cut(s) 490
TaqI TCGA 5 cut(s) 165, 174, 267, 321, 466
TaqII GACCGA 1 cut(s) 183
TasI AATT 3 cut(s) 252, 279, 290
TfiI GAWTC 1 cut(s) 156
Tru1I TTAA 1 cut(s) 357
Tru9I TTAA 1 cut(s) 357
TseI GCWGC 1 cut(s) 110
TspGWI ACGGA 1 cut(s) 470
Tth111I GACNNNGTC 1 cut(s) 170
VpaK11BI GGWCC 1 cut(s) 205
VspI ATTAAT 1 cut(s) 357
XapI RAATTY 2 cut(s) 279, 290
XceI RCATGY 1 cut(s) 328
XmiI GTMKAC 2 cut(s) 165, 466
XspI CTAG 2 cut(s) 368, 495
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.