Rroxscaffold_1G00013150

Acyl-coenzyme A thioesterase 13-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000478
Physical Location & Seq
Forward (+)
16188031 .. 16200437
12407 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00013150.1

Sequence Viewer

Length: 480 bp
ATGGAGAACGAGGCAAAGAAGTTTTTGGAGCTGAGAGAGCAAGAGTCGGAGACTGTGTCGGGACTGGCCTTACCAGAATTCCGGCTCGGTGAGGCAACCATCTATGATCATTTGGCTCTAAGAGGCATCCGAGTCGACCGAGTCGAACCAGGGCTGGTTGTGTGTACTTTCAAGGTCCCTCTACGACTCCTTGATAGAGATGGAAATTTTGCAAGTGGTGCAATTGCAAACCTGGTTGATGTAGTTGGTAGTTGCGTGGTATATGTTTCCGATGCACCTATGAATGTCACGATGGAGATGTCCATATCGTATTTGTCTACGGCAAAGCTTAATGATGAGTTAGAGATAACTTCAAGGTTGTTAGGACAGAAAGGAGGTTACTCTGGAATAATAGTTCTTCTAAGAAACAAGGTAACCGGAAGGATTATTTCAGAGGGTCGTCATTCCTTGTTTCGTTCTCATACACATGGCAAACTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
4HBT

Protein Analysis

159

Amino Acids

17.53

Weight (kDa)

6.43

Isoelectric Point (pI)

28.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000478)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29590
fragaria_vesca FvH4_3g37930 FvH4_3g37930 FvH4_3g37970 FvH4_3g37990 FvH4_3g37990 FvH4_3g38000 FvH4_3g38010 FvH4_3g38050 FvH4_3g38060
malus_domestica MD03G1077300.v1.1 MD03G1077400.v1.1 MD03G1077500.v1.1 MD08G1031500.v1.1 MD11G1081500.v1.1 MD11G1081600.v1.1 MD11G1081700.v1.1 MD11G1081800.v1.1 MD11G1081900.v1.1
prunus_persica Prupe.6G061800_v2.0.a1 Prupe.6G061900_v2.0.a1 Prupe.6G062000_v2.0.a1 Prupe.6G062000_v2.0.a1 Prupe.6G062100_v2.0.a1 Prupe.6G062100_v2.0.a1 Prupe.6G062200_v2.0.a1 Prupe.6G062300_v2.0.a1
pyrus_communis pycom03g06110 pycom03g06120 pycom03g06130 pycom11g06960 pycom11g06970 pycom11g06980 pycom11g07020
rosa_chinensis RchiOBHm_Chr5g0068361 RchiOBHm_Chr5g0068381 RchiOBHm_Chr5g0068391 RchiOBHm_Chr5g0068401 RchiOBHm_Chr5g0068411 RchiOBHm_Chr5g0068441
rosa_laevigata RLG00000035969 RLG00000035971 RLG00000035972 RLG00000035973 RLG00000035974
rosa_multiflora Rmu_sc0001418.1_g000002 Rmu_sc0003450.1_g000002 Rmu_sc0003450.1_g000003 Rmu_sc0003450.1_g000004 Rmu_sc0003450.1_g000007 Rmu_sc0005087.1_g000001 Rmu_sc0006054.1_g000001
rosa_roxburghii Rroxscaffold_1G00012370 Rroxscaffold_1G00012380 Rroxscaffold_1G00012390 Rroxscaffold_1G00012400 Rroxscaffold_1G00012420 Rroxscaffold_1G00013110 Rroxscaffold_1G00013120 Rroxscaffold_1G00013130 Rroxscaffold_1G00013150 Rroxscaffold_1G00013160
rosa_rugosa Rorug05G0389200 Rorug05G0389400 Rorug05G0389500 Rorug05G0389600 Rorug05G0389600
rosa_samantha Rh5AG447900 Rh5AG448100 Rh5AG448200 Rh5AG448300 Rh5AG448400 Rh5BG465700 Rh5BG465900 Rh5BG466200 Rh5BG466300 Rh5BG466700 Rh5CG487500 Rh5CG487800 Rh5CG487900 Rh5CG488300 Rh5DG479500 Rh5DG479700 Rh5DG479800 Rh5DG480100
rosa_wichuraiana Rw5G041800 Rw5G041830 Rw5G041840 Rw5G041850 Rw5G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 135, 317
AcsI RAATTY 2 cut(s) 77, 205
AfaI GTAC 1 cut(s) 166
AgsI TTSAA 2 cut(s) 172, 354
AjnI CCWGG 2 cut(s) 148, 231
AloI GAACNNNNNNTCC 2 cut(s) 378, 410
AluBI AGCT 2 cut(s) 31, 328
AluI AGCT 2 cut(s) 31, 328
Alw26I GTCTC 1 cut(s) 44
AoxI GGCC 1 cut(s) 66
ApoI RAATTY 2 cut(s) 77, 205
AspS9I GGNCC 1 cut(s) 175
AsuHPI GGTGA 1 cut(s) 101
AvaII GGWCC 1 cut(s) 175
BccI CCATC 3 cut(s) 107, 194, 286
BceAI ACGGC 1 cut(s) 336
BcgI CGANNNNNNTGC 2 cut(s) 115, 149
BciT130I CCWGG 2 cut(s) 150, 233
BclI TGATCA 1 cut(s) 106
BcoDI GTCTC 1 cut(s) 44
Bme1390I CCNGG 2 cut(s) 150, 233
Bme18I GGWCC 1 cut(s) 175
BmgT120I GGNCC 1 cut(s) 175
BmiI GGNNCC 1 cut(s) 177
BmrFI CCNGG 2 cut(s) 150, 233
BmsI GCATC 2 cut(s) 135, 262
BsaJI CCNNGG 1 cut(s) 149
BsaWI WCCGGW 1 cut(s) 416
BsaXI ACNNNNNCTCC 2 cut(s) 41, 71
Bse1I ACTGG 1 cut(s) 69
BseBI CCWGG 2 cut(s) 150, 233
BseDI CCNNGG 1 cut(s) 149
BseGI GGATG 1 cut(s) 126
BseMII CTCAG 1 cut(s) 23
BseNI ACTGG 1 cut(s) 69
Bsh1285I CGRYCG 1 cut(s) 139
BshFI GGCC 1 cut(s) 68
BsiEI CGRYCG 1 cut(s) 139
BsiSI CCGG 2 cut(s) 82, 417
BslFI GGGAC 2 cut(s) 75, 161
BsmAI GTCTC 1 cut(s) 44
BsmFI GGGAC 2 cut(s) 75, 161
BsnI GGCC 1 cut(s) 68
Bsp143I GATC 1 cut(s) 106
BspANI GGCC 1 cut(s) 68
BspCNI CTCAG 1 cut(s) 24
BspLI GGNNCC 1 cut(s) 177
BsrI ACTGG 1 cut(s) 69
BssECI CCNNGG 1 cut(s) 149
BssMI GATC 1 cut(s) 106
Bst2UI CCWGG 2 cut(s) 150, 233
Bst4CI ACNGT 1 cut(s) 55
BstAPI GCANNNNNTGC 1 cut(s) 218
BstDEI CTNAG 3 cut(s) 32, 119, 401
BstEII GGTNACC 1 cut(s) 412
BstF5I GGATG 1 cut(s) 126
BstKTI GATC 1 cut(s) 109
BstMAI GTCTC 1 cut(s) 44
BstMBI GATC 1 cut(s) 106
BstMCI CGRYCG 1 cut(s) 139
BstMWI GCNNNNNNNGC 2 cut(s) 37, 218
BstNI CCWGG 2 cut(s) 150, 233
BstPI GGTNACC 1 cut(s) 412
BstSCI CCNGG 2 cut(s) 148, 231
BsuRI GGCC 1 cut(s) 68
BtsCI GGATG 1 cut(s) 126
Cfr13I GGNCC 1 cut(s) 175
CsiI ACCWGGT 1 cut(s) 231
Csp6I GTAC 1 cut(s) 165
CviAII CATG 1 cut(s) 467
CviJI RGCY 6 cut(s) 31, 68, 85, 116, 154, 328
CviKI_1 RGCY 6 cut(s) 31, 68, 85, 116, 154, 328
CviQI GTAC 1 cut(s) 165
DdeI CTNAG 3 cut(s) 32, 119, 401
DpnI GATC 1 cut(s) 108
DpnII GATC 1 cut(s) 106
Eco47I GGWCC 1 cut(s) 175
Eco91I GGTNACC 1 cut(s) 412
EcoO109I RGGNCCY 1 cut(s) 175
EcoO65I GGTNACC 1 cut(s) 412
EcoRI GAATTC 1 cut(s) 77
EcoRII CCWGG 2 cut(s) 148, 231
FaeI CATG 1 cut(s) 470
FaiI YATR 8 cut(s) 105, 262, 264, 281, 305, 462, 468, 478
FaqI GGGAC 2 cut(s) 75, 161
FatI CATG 1 cut(s) 466
FbaI TGATCA 1 cut(s) 106
FblI GTMKAC 2 cut(s) 135, 317
FokI GGATG 1 cut(s) 113
HaeIII GGCC 1 cut(s) 68
HapII CCGG 2 cut(s) 82, 417
Hin1II CATG 1 cut(s) 470
HincII GTYRAC 1 cut(s) 136
HindII GTYRAC 1 cut(s) 136
HindIII AAGCTT 1 cut(s) 326
HinfI GANTC 4 cut(s) 44, 132, 141, 186
HpaII CCGG 2 cut(s) 82, 417
HphI GGTGA 1 cut(s) 101
Hpy166II GTNNAC 3 cut(s) 136, 165, 318
Hpy188I TCNGA 4 cut(s) 49, 131, 271, 433
Hpy188III TCNNGA 3 cut(s) 60, 289, 384
Hpy8I GTNNAC 3 cut(s) 136, 165, 318
HpyAV CCTTC 1 cut(s) 414
HpyCH4III ACNGT 1 cut(s) 55
HpyCH4V TGCA 4 cut(s) 212, 221, 227, 275
HpyF10VI GCNNNNNNNGC 2 cut(s) 37, 218
HpyF3I CTNAG 3 cut(s) 32, 119, 401
Hsp92II CATG 1 cut(s) 470
Ksp22I TGATCA 1 cut(s) 106
Kzo9I GATC 1 cut(s) 106
LmnI GCTCC 1 cut(s) 28
LweI GCATC 2 cut(s) 135, 262
MabI ACCWGGT 1 cut(s) 231
MaeIII GTNAC 3 cut(s) 286, 377, 412
MalI GATC 1 cut(s) 108
MboI GATC 1 cut(s) 106
MboII GAAGA 1 cut(s) 389
MfeI CAATTG 1 cut(s) 222
MluCI AATT 3 cut(s) 77, 205, 222
MlyI GAGTC 4 cut(s) 53, 141, 150, 180
MmeI TCCRAC 1 cut(s) 27
MnlI CCTC 6 cut(s) 4, 85, 116, 189, 368, 427
MseI TTAA 1 cut(s) 330
MslI CAYNNNNRTG 1 cut(s) 465
MspI CCGG 2 cut(s) 82, 417
MspR9I CCNGG 2 cut(s) 150, 233
MunI CAATTG 1 cut(s) 222
MvaI CCWGG 2 cut(s) 150, 233
MwoI GCNNNNNNNGC 2 cut(s) 37, 218
NdeII GATC 1 cut(s) 106
NlaIII CATG 1 cut(s) 470
NlaIV GGNNCC 1 cut(s) 177
NmuCI GTSAC 1 cut(s) 286
PcsI WCGNNNNNNNCGW 1 cut(s) 141
PflFI GACNNNGTC 2 cut(s) 55, 140
PleI GAGTC 4 cut(s) 52, 140, 149, 180
PpsI GAGTC 4 cut(s) 52, 140, 149, 180
PpuMI RGGWCCY 1 cut(s) 175
Psp5II RGGWCCY 1 cut(s) 175
Psp6I CCWGG 2 cut(s) 148, 231
PspEI GGTNACC 1 cut(s) 412
PspGI CCWGG 2 cut(s) 148, 231
PspN4I GGNNCC 1 cut(s) 177
PspPI GGNCC 1 cut(s) 175
PspPPI RGGWCCY 1 cut(s) 175
PsyI GACNNNGTC 2 cut(s) 55, 140
RsaI GTAC 1 cut(s) 166
RsaNI GTAC 1 cut(s) 165
RseI CAYNNNNRTG 1 cut(s) 465
SalI GTCGAC 1 cut(s) 134
SaqAI TTAA 1 cut(s) 330
Sau3AI GATC 1 cut(s) 106
Sau96I GGNCC 1 cut(s) 175
SchI GAGTC 4 cut(s) 53, 141, 150, 180
ScrFI CCNGG 2 cut(s) 150, 233
SetI ASST 8 cut(s) 33, 177, 234, 280, 330, 359, 379, 414
SexAI ACCWGGT 1 cut(s) 231
SfaNI GCATC 2 cut(s) 135, 262
SinI GGWCC 1 cut(s) 175
SmiMI CAYNNNNRTG 1 cut(s) 465
Sse9I AATT 3 cut(s) 77, 205, 222
StyD4I CCNGG 2 cut(s) 148, 231
TaaI ACNGT 1 cut(s) 55
TaqI TCGA 2 cut(s) 135, 144
TaqII GACCGA 1 cut(s) 153
TasI AATT 3 cut(s) 77, 205, 222
TatI WGTACW 1 cut(s) 164
Tru1I TTAA 1 cut(s) 330
Tru9I TTAA 1 cut(s) 330
TseFI GTSAC 1 cut(s) 286
Tsp45I GTSAC 1 cut(s) 286
TspDTI ATGAA 1 cut(s) 296
Tth111I GACNNNGTC 2 cut(s) 55, 140
VpaK11BI GGWCC 1 cut(s) 175
XapI RAATTY 2 cut(s) 77, 205
XmiI GTMKAC 2 cut(s) 135, 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.