MD08G1031500.v1.1

Acyl-coenzyme A thioesterase 13-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0000478
Physical Location & Seq
Reverse (-)
2259114 .. 2259542
429 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1031500.v1.1.491

Sequence Viewer

Length: 429 bp
ATGGAAGGTTATAGATTTGGGGAAAGGGAAGTCAAGATGGAGAAGGCGAAGAAGCGTCTGGAGCTGAACTCGGACGAGTCAGAGACCATGTCGCGAGTTGCCATCCCAGCTCTCCAAATCAGAAAGTCGAGCTTCTACGATGCCTTCGCTCTGAGAAGTATCCAAGTCGAGCGAGTCAAGCCCGATGTTGTCATCTGTTATTTCAAGGTCCCTCCCCGCCTTATCGATAGAGATGGAACTTTGGCAAATGGTGCAATTGCAAACCTTGTTGATATAGTTGGTGGTTCCTTAGCTTATATTCCAGACCTCCCTATGAATGTTTCCGTCGACATATCCATCTCTTATGTCTCAACTGCCAAGGTTGGAATAATGGAGAGGGATTTTCTGGGTTTGAGCTCAATCAGTGGTGGTGCGACTCTGAAGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
4HBT

Protein Analysis

143

Amino Acids

15.65

Weight (kDa)

6.36

Isoelectric Point (pI)

24.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000478)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29590
fragaria_vesca FvH4_3g37930 FvH4_3g37930 FvH4_3g37970 FvH4_3g37990 FvH4_3g37990 FvH4_3g38000 FvH4_3g38010 FvH4_3g38050 FvH4_3g38060
malus_domestica MD03G1077300.v1.1 MD03G1077400.v1.1 MD03G1077500.v1.1 MD08G1031500.v1.1 MD11G1081500.v1.1 MD11G1081600.v1.1 MD11G1081700.v1.1 MD11G1081800.v1.1 MD11G1081900.v1.1
prunus_persica Prupe.6G061800_v2.0.a1 Prupe.6G061900_v2.0.a1 Prupe.6G062000_v2.0.a1 Prupe.6G062000_v2.0.a1 Prupe.6G062100_v2.0.a1 Prupe.6G062100_v2.0.a1 Prupe.6G062200_v2.0.a1 Prupe.6G062300_v2.0.a1
pyrus_communis pycom03g06110 pycom03g06120 pycom03g06130 pycom11g06960 pycom11g06970 pycom11g06980 pycom11g07020
rosa_chinensis RchiOBHm_Chr5g0068361 RchiOBHm_Chr5g0068381 RchiOBHm_Chr5g0068391 RchiOBHm_Chr5g0068401 RchiOBHm_Chr5g0068411 RchiOBHm_Chr5g0068441
rosa_laevigata RLG00000035969 RLG00000035971 RLG00000035972 RLG00000035973 RLG00000035974
rosa_multiflora Rmu_sc0001418.1_g000002 Rmu_sc0003450.1_g000002 Rmu_sc0003450.1_g000003 Rmu_sc0003450.1_g000004 Rmu_sc0003450.1_g000007 Rmu_sc0005087.1_g000001 Rmu_sc0006054.1_g000001
rosa_roxburghii Rroxscaffold_1G00012370 Rroxscaffold_1G00012380 Rroxscaffold_1G00012390 Rroxscaffold_1G00012400 Rroxscaffold_1G00012420 Rroxscaffold_1G00013110 Rroxscaffold_1G00013120 Rroxscaffold_1G00013130 Rroxscaffold_1G00013150 Rroxscaffold_1G00013160
rosa_rugosa Rorug05G0389200 Rorug05G0389400 Rorug05G0389500 Rorug05G0389600 Rorug05G0389600
rosa_samantha Rh5AG447900 Rh5AG448100 Rh5AG448200 Rh5AG448300 Rh5AG448400 Rh5BG465700 Rh5BG465900 Rh5BG466200 Rh5BG466300 Rh5BG466700 Rh5CG487500 Rh5CG487800 Rh5CG487900 Rh5CG488300 Rh5DG479500 Rh5DG479700 Rh5DG479800 Rh5DG480100
rosa_wichuraiana Rw5G041800 Rw5G041830 Rw5G041840 Rw5G041850 Rw5G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 327
AccII CGCG 1 cut(s) 94
AciI CCGC 1 cut(s) 217
AgsI TTSAA 1 cut(s) 205
AluBI AGCT 5 cut(s) 64, 110, 132, 293, 396
AluI AGCT 5 cut(s) 64, 110, 132, 293, 396
Alw21I GWGCWC 1 cut(s) 398
Alw26I GTCTC 2 cut(s) 77, 352
AspS9I GGNCC 1 cut(s) 208
AvaII GGWCC 1 cut(s) 208
BanII GRGCYC 1 cut(s) 398
Bbv12I GWGCWC 1 cut(s) 398
BccI CCATC 4 cut(s) 31, 110, 227, 344
BciVI GTATCC 1 cut(s) 170
BcoDI GTCTC 2 cut(s) 77, 352
BfuI GTATCC 1 cut(s) 170
Bme18I GGWCC 1 cut(s) 208
BmgT120I GGNCC 1 cut(s) 208
BmiI GGNNCC 2 cut(s) 210, 286
BmsI GCATC 1 cut(s) 130
BplI GAGNNNNNCTC 2 cut(s) 53, 85
BpmI CTGGAG 1 cut(s) 80
Bpu10I CCTNAGC 1 cut(s) 289
Bsa29I ATCGAT 1 cut(s) 225
BsaI GGTCTC 1 cut(s) 77
BsaJI CCNNGG 1 cut(s) 357
BseCI ATCGAT 1 cut(s) 225
BseDI CCNNGG 1 cut(s) 357
BseGI GGATG 1 cut(s) 102
BseMII CTCAG 1 cut(s) 143
BseYI CCCAGC 1 cut(s) 106
Bsh1236I CGCG 1 cut(s) 94
BshVI ATCGAT 1 cut(s) 225
BsiHKAI GWGCWC 1 cut(s) 398
BslFI GGGAC 1 cut(s) 194
BsmAI GTCTC 2 cut(s) 77, 352
BsmFI GGGAC 1 cut(s) 194
Bso31I GGTCTC 1 cut(s) 77
Bsp1286I GDGCHC 1 cut(s) 398
Bsp68I TCGCGA 1 cut(s) 94
BspACI CCGC 1 cut(s) 217
BspCNI CTCAG 1 cut(s) 144
BspDI ATCGAT 1 cut(s) 225
BspFNI CGCG 1 cut(s) 94
BspLI GGNNCC 2 cut(s) 210, 286
BspTNI GGTCTC 1 cut(s) 77
BssECI CCNNGG 1 cut(s) 357
BssT1I CCWWGG 1 cut(s) 357
BstAPI GCANNNNNTGC 1 cut(s) 251
BstDEI CTNAG 2 cut(s) 152, 289
BstF5I GGATG 1 cut(s) 102
BstFNI CGCG 1 cut(s) 94
BstMAI GTCTC 2 cut(s) 77, 352
BstMWI GCNNNNNNNGC 4 cut(s) 61, 107, 178, 251
BstUI CGCG 1 cut(s) 94
Bsu15I ATCGAT 1 cut(s) 225
BsuI GTATCC 1 cut(s) 170
BsuTUI ATCGAT 1 cut(s) 225
BtsCI GGATG 1 cut(s) 102
BtsIMutI CAGTG 1 cut(s) 409
BtuMI TCGCGA 1 cut(s) 94
Cfr13I GGNCC 1 cut(s) 208
ClaI ATCGAT 1 cut(s) 225
CseI GACGC 1 cut(s) 44
CviAII CATG 1 cut(s) 88
CviJI RGCY 6 cut(s) 64, 110, 132, 181, 293, 396
CviKI_1 RGCY 6 cut(s) 64, 110, 132, 181, 293, 396
DdeI CTNAG 2 cut(s) 152, 289
Ecl136II GAGCTC 1 cut(s) 396
Eco130I CCWWGG 1 cut(s) 357
Eco24I GRGCYC 1 cut(s) 398
Eco31I GGTCTC 1 cut(s) 77
Eco47I GGWCC 1 cut(s) 208
Eco53kI GAGCTC 1 cut(s) 396
EcoICRI GAGCTC 1 cut(s) 396
EcoO109I RGGNCCY 1 cut(s) 208
EcoT14I CCWWGG 1 cut(s) 357
EcoT38I GRGCYC 1 cut(s) 398
ErhI CCWWGG 1 cut(s) 357
FaeI CATG 1 cut(s) 91
FaiI YATR 7 cut(s) 12, 89, 275, 297, 314, 332, 345
FalI AAGNNNNNCTT 2 cut(s) 116, 148
FaqI GGGAC 1 cut(s) 194
FatI CATG 1 cut(s) 87
FauI CCCGC 1 cut(s) 224
FblI GTMKAC 1 cut(s) 327
FokI GGATG 1 cut(s) 89
FriOI GRGCYC 1 cut(s) 398
GsaI CCCAGC 1 cut(s) 110
GsuI CTGGAG 1 cut(s) 80
HgaI GACGC 1 cut(s) 44
Hin1II CATG 1 cut(s) 91
HincII GTYRAC 1 cut(s) 328
HindII GTYRAC 1 cut(s) 328
HinfI GANTC 3 cut(s) 77, 174, 415
Hpy166II GTNNAC 1 cut(s) 328
Hpy188I TCNGA 5 cut(s) 73, 82, 122, 153, 420
Hpy188III TCNNGA 4 cut(s) 34, 59, 93, 302
Hpy8I GTNNAC 1 cut(s) 328
Hpy99I CGWCG 1 cut(s) 329
HpyAV CCTTC 3 cut(s) 37, 154, 415
HpyCH4V TGCA 2 cut(s) 254, 260
HpyF10VI GCNNNNNNNGC 4 cut(s) 61, 107, 178, 251
HpyF3I CTNAG 2 cut(s) 152, 289
Hsp92II CATG 1 cut(s) 91
LmnI GCTCC 1 cut(s) 61
LpnPI CCDG 4 cut(s) 44, 120, 315, 371
LweI GCATC 1 cut(s) 130
MboII GAAGA 1 cut(s) 61
MfeI CAATTG 1 cut(s) 255
MhlI GDGCHC 1 cut(s) 398
MluCI AATT 1 cut(s) 255
MlyI GAGTC 3 cut(s) 86, 183, 409
MmeI TCCRAC 1 cut(s) 343
MnlI CCTC 3 cut(s) 222, 317, 369
MunI CAATTG 1 cut(s) 255
MvnI CGCG 1 cut(s) 94
MwoI GCNNNNNNNGC 4 cut(s) 61, 107, 178, 251
NlaIII CATG 1 cut(s) 91
NlaIV GGNNCC 2 cut(s) 210, 286
NruI TCGCGA 1 cut(s) 94
PflFI GACNNNGTC 1 cut(s) 88
PleI GAGTC 3 cut(s) 85, 182, 409
PpsI GAGTC 3 cut(s) 85, 182, 409
PpuMI RGGWCCY 1 cut(s) 208
Psp124BI GAGCTC 1 cut(s) 398
Psp5II RGGWCCY 1 cut(s) 208
PspFI CCCAGC 1 cut(s) 106
PspN4I GGNNCC 2 cut(s) 210, 286
PspPI GGNCC 1 cut(s) 208
PspPPI RGGWCCY 1 cut(s) 208
PsyI GACNNNGTC 1 cut(s) 88
RruI TCGCGA 1 cut(s) 94
SacI GAGCTC 1 cut(s) 398
SalI GTCGAC 1 cut(s) 326
Sau96I GGNCC 1 cut(s) 208
SchI GAGTC 3 cut(s) 86, 183, 409
SduI GDGCHC 1 cut(s) 398
SfaNI GCATC 1 cut(s) 130
SinI GGWCC 1 cut(s) 208
Sse9I AATT 1 cut(s) 255
SsiI CCGC 1 cut(s) 217
SstI GAGCTC 1 cut(s) 398
StyI CCWWGG 1 cut(s) 357
TaqI TCGA 4 cut(s) 128, 168, 225, 327
TasI AATT 1 cut(s) 255
TscAI CASTG 1 cut(s) 409
TspDTI ATGAA 1 cut(s) 329
TspGWI ACGGA 1 cut(s) 313
TspRI CASTG 1 cut(s) 409
Tth111I GACNNNGTC 1 cut(s) 88
VpaK11BI GGWCC 1 cut(s) 208
XmiI GTMKAC 1 cut(s) 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.