FvH4_3g38000

Acyl-coenzyme A thioesterase 13-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000478
Physical Location & Seq
Reverse (-)
32532359 .. 32533298
940 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g38000.t1

Sequence Viewer

Length: 480 bp
ATGGAAAAGAAGGAGAATGAATGTGTGGAGCTGAGCCTGCCCGAGTCAGACACCGTGTTGCGAATCGTCATTCCTCCCCAGAGACCTGGTGAGGCGAGCTTCTATGAGAATTTTGCTATCAGAGGCATCCGAGTCGACCAGGCCGAACCTGGACTGGTTGTCTGTACTTTCAAGGTTCCTCCCCGTCTCACTGATAGAGCTGGAAATCTGTCCAACGGGGCAATTGCAAACCTGGTTGATATTGTTGGATCATATGTAACTTATACTGGTGGTCTCATAAGGAATGTGTCGGCAGATATATCCATCTCGTACATGTCAACGGCAAAGCTTGATGATGAGGTAGAGATCACCTCCAAAAGATTAGGACAAAAGGGGGGTTACACAGGGATATTGGTGCTCCTGAGAAACAAAGCAACCGGGGATGTCATTGCTGAAGGTCGACATTCCATGTTTTGTTTAGACTCTGCTTCCAAACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
4HBT

Protein Analysis

160

Amino Acids

17.23

Weight (kDa)

5.48

Isoelectric Point (pI)

30.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
4HBT PF03061 68 - 118 3.9e-06 Thioesterase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000478)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29590
fragaria_vesca FvH4_3g37930 FvH4_3g37930 FvH4_3g37970 FvH4_3g37990 FvH4_3g37990 FvH4_3g38000 FvH4_3g38010 FvH4_3g38050 FvH4_3g38060
malus_domestica MD03G1077300.v1.1 MD03G1077400.v1.1 MD03G1077500.v1.1 MD08G1031500.v1.1 MD11G1081500.v1.1 MD11G1081600.v1.1 MD11G1081700.v1.1 MD11G1081800.v1.1 MD11G1081900.v1.1
prunus_persica Prupe.6G061800_v2.0.a1 Prupe.6G061900_v2.0.a1 Prupe.6G062000_v2.0.a1 Prupe.6G062000_v2.0.a1 Prupe.6G062100_v2.0.a1 Prupe.6G062100_v2.0.a1 Prupe.6G062200_v2.0.a1 Prupe.6G062300_v2.0.a1
pyrus_communis pycom03g06110 pycom03g06120 pycom03g06130 pycom11g06960 pycom11g06970 pycom11g06980 pycom11g07020
rosa_chinensis RchiOBHm_Chr5g0068361 RchiOBHm_Chr5g0068381 RchiOBHm_Chr5g0068391 RchiOBHm_Chr5g0068401 RchiOBHm_Chr5g0068411 RchiOBHm_Chr5g0068441
rosa_laevigata RLG00000035969 RLG00000035971 RLG00000035972 RLG00000035973 RLG00000035974
rosa_multiflora Rmu_sc0001418.1_g000002 Rmu_sc0003450.1_g000002 Rmu_sc0003450.1_g000003 Rmu_sc0003450.1_g000004 Rmu_sc0003450.1_g000007 Rmu_sc0005087.1_g000001 Rmu_sc0006054.1_g000001
rosa_roxburghii Rroxscaffold_1G00012370 Rroxscaffold_1G00012380 Rroxscaffold_1G00012390 Rroxscaffold_1G00012400 Rroxscaffold_1G00012420 Rroxscaffold_1G00013110 Rroxscaffold_1G00013120 Rroxscaffold_1G00013130 Rroxscaffold_1G00013150 Rroxscaffold_1G00013160
rosa_rugosa Rorug05G0389200 Rorug05G0389400 Rorug05G0389500 Rorug05G0389600 Rorug05G0389600
rosa_samantha Rh5AG447900 Rh5AG448100 Rh5AG448200 Rh5AG448300 Rh5AG448400 Rh5BG465700 Rh5BG465900 Rh5BG466200 Rh5BG466300 Rh5BG466700 Rh5CG487500 Rh5CG487800 Rh5CG487900 Rh5CG488300 Rh5DG479500 Rh5DG479700 Rh5DG479800 Rh5DG480100
rosa_wichuraiana Rw5G041800 Rw5G041830 Rw5G041840 Rw5G041850 Rw5G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 135, 439
AclWI GGATC 1 cut(s) 256
AcsI RAATTY 1 cut(s) 109
AcuI CTGAAG 1 cut(s) 453
AfaI GTAC 2 cut(s) 166, 311
AflIII ACRYGT 1 cut(s) 312
AgsI TTSAA 1 cut(s) 172
AhdI GACNNNNNGTC 1 cut(s) 158
AjnI CCWGG 4 cut(s) 85, 138, 148, 231
AluBI AGCT 4 cut(s) 31, 99, 200, 328
AluI AGCT 4 cut(s) 31, 99, 200, 328
Alw21I GWGCWC 1 cut(s) 399
Alw26I GTCTC 3 cut(s) 76, 191, 278
AlwI GGATC 1 cut(s) 256
Ama87I CYCGRG 1 cut(s) 41
AoxI GGCC 1 cut(s) 141
ApoI RAATTY 1 cut(s) 109
AsuC2I CCSGG 1 cut(s) 418
AsuHPI GGTGA 2 cut(s) 101, 340
AvaI CYCGRG 1 cut(s) 41
Bbv12I GWGCWC 1 cut(s) 399
BccI CCATC 1 cut(s) 311
BceAI ACGGC 1 cut(s) 336
BcgI CGANNNNNNTGC 2 cut(s) 115, 149
BciT130I CCWGG 4 cut(s) 87, 140, 150, 233
BcnI CCSGG 1 cut(s) 418
BcoDI GTCTC 3 cut(s) 76, 191, 278
BlpI GCTNAGC 1 cut(s) 32
Bme1390I CCNGG 5 cut(s) 87, 140, 150, 233, 418
BmeRI GACNNNNNGTC 1 cut(s) 158
BmeT110I CYCGRG 1 cut(s) 41
BmiI GGNNCC 1 cut(s) 177
BmrFI CCNGG 5 cut(s) 87, 140, 150, 233, 418
BmsI GCATC 1 cut(s) 135
BplI GAGNNNNNCTC 2 cut(s) 335, 367
Bpu1102I GCTNAGC 1 cut(s) 32
BpuMI CCSGG 1 cut(s) 418
BsaI GGTCTC 2 cut(s) 76, 278
BsaJI CCNNGG 1 cut(s) 417
Bse1I ACTGG 2 cut(s) 159, 271
Bse3DI GCAATG 1 cut(s) 426
BseBI CCWGG 4 cut(s) 87, 140, 150, 233
BseDI CCNNGG 1 cut(s) 417
BseGI GGATG 2 cut(s) 126, 427
BseMI GCAATG 1 cut(s) 426
BseMII CTCAG 2 cut(s) 23, 392
BseNI ACTGG 2 cut(s) 159, 271
BshFI GGCC 1 cut(s) 143
BsiHKAI GWGCWC 1 cut(s) 399
BsiHKCI CYCGRG 1 cut(s) 41
BsiSI CCGG 1 cut(s) 417
BsmAI GTCTC 3 cut(s) 76, 191, 278
BsmBI CGTCTC 1 cut(s) 191
BsnI GGCC 1 cut(s) 143
Bso31I GGTCTC 2 cut(s) 76, 278
BsoBI CYCGRG 1 cut(s) 41
Bsp1286I GDGCHC 1 cut(s) 399
Bsp143I GATC 2 cut(s) 248, 345
Bsp1720I GCTNAGC 1 cut(s) 32
BspANI GGCC 1 cut(s) 143
BspCNI CTCAG 2 cut(s) 24, 393
BspLI GGNNCC 1 cut(s) 177
BspPI GGATC 1 cut(s) 256
BspTNI GGTCTC 2 cut(s) 76, 278
BsrDI GCAATG 1 cut(s) 426
BsrI ACTGG 2 cut(s) 159, 271
BssECI CCNNGG 1 cut(s) 417
BssMI GATC 2 cut(s) 248, 345
Bst2UI CCWGG 4 cut(s) 87, 140, 150, 233
Bst4CI ACNGT 1 cut(s) 55
BstC8I GCNNGC 2 cut(s) 38, 97
BstDEI CTNAG 2 cut(s) 32, 401
BstF5I GGATG 2 cut(s) 126, 427
BstKTI GATC 2 cut(s) 251, 348
BstMAI GTCTC 3 cut(s) 76, 191, 278
BstMBI GATC 2 cut(s) 248, 345
BstMWI GCNNNNNNNGC 1 cut(s) 37
BstNI CCWGG 4 cut(s) 87, 140, 150, 233
BstNSI RCATGY 1 cut(s) 316
BstSCI CCNGG 5 cut(s) 85, 138, 148, 231, 416
BstXI CCANNNNNNTGG 1 cut(s) 86
BsuRI GGCC 1 cut(s) 143
BtsCI GGATG 2 cut(s) 126, 427
BtsIMutI CAGTG 1 cut(s) 189
Cac8I GCNNGC 2 cut(s) 38, 97
CsiI ACCWGGT 2 cut(s) 85, 231
Csp6I GTAC 2 cut(s) 165, 310
CviAII CATG 2 cut(s) 313, 448
CviJI RGCY 6 cut(s) 31, 36, 99, 143, 200, 328
CviKI_1 RGCY 6 cut(s) 31, 36, 99, 143, 200, 328
CviQI GTAC 2 cut(s) 165, 310
DdeI CTNAG 2 cut(s) 32, 401
DpnI GATC 2 cut(s) 250, 347
DpnII GATC 2 cut(s) 248, 345
DriI GACNNNNNGTC 1 cut(s) 158
Eam1105I GACNNNNNGTC 1 cut(s) 158
Eco31I GGTCTC 2 cut(s) 76, 278
Eco57I CTGAAG 1 cut(s) 453
Eco88I CYCGRG 1 cut(s) 41
EcoRII CCWGG 4 cut(s) 85, 138, 148, 231
Esp3I CGTCTC 1 cut(s) 191
FaeI CATG 2 cut(s) 316, 451
FaiI YATR 8 cut(s) 105, 253, 255, 264, 278, 299, 314, 449
FatI CATG 2 cut(s) 312, 447
FauNDI CATATG 1 cut(s) 253
FblI GTMKAC 2 cut(s) 135, 439
FokI GGATG 2 cut(s) 113, 434
HaeIII GGCC 1 cut(s) 143
HapII CCGG 1 cut(s) 417
Hin1II CATG 2 cut(s) 316, 451
HincII GTYRAC 3 cut(s) 136, 318, 440
HindII GTYRAC 3 cut(s) 136, 318, 440
HindIII AAGCTT 1 cut(s) 326
HinfI GANTC 4 cut(s) 44, 63, 132, 461
HpaII CCGG 1 cut(s) 417
HphI GGTGA 2 cut(s) 101, 340
Hpy166II GTNNAC 3 cut(s) 136, 318, 440
Hpy188I TCNGA 3 cut(s) 49, 122, 131
Hpy188III TCNNGA 1 cut(s) 400
Hpy8I GTNNAC 3 cut(s) 136, 318, 440
HpyAV CCTTC 2 cut(s) 4, 428
HpyCH4III ACNGT 1 cut(s) 55
HpyCH4V TGCA 1 cut(s) 227
HpyF10VI GCNNNNNNNGC 1 cut(s) 37
HpyF3I CTNAG 2 cut(s) 32, 401
Hsp92II CATG 2 cut(s) 316, 451
Kzo9I GATC 2 cut(s) 248, 345
LmnI GCTCC 2 cut(s) 28, 402
LweI GCATC 1 cut(s) 135
MabI ACCWGGT 2 cut(s) 85, 231
MaeIII GTNAC 2 cut(s) 256, 377
MalI GATC 2 cut(s) 250, 347
MboI GATC 2 cut(s) 248, 345
MfeI CAATTG 1 cut(s) 222
MhlI GDGCHC 1 cut(s) 399
MluCI AATT 2 cut(s) 109, 222
MlyI GAGTC 3 cut(s) 53, 141, 455
MmeI TCCRAC 2 cut(s) 226, 237
MnlI CCTC 6 cut(s) 84, 85, 116, 189, 331, 361
MspI CCGG 1 cut(s) 417
MspR9I CCNGG 5 cut(s) 87, 140, 150, 233, 418
MunI CAATTG 1 cut(s) 222
MvaI CCWGG 4 cut(s) 87, 140, 150, 233
MwoI GCNNNNNNNGC 1 cut(s) 37
NciI CCSGG 1 cut(s) 418
NdeI CATATG 1 cut(s) 253
NdeII GATC 2 cut(s) 248, 345
NlaIII CATG 2 cut(s) 316, 451
NlaIV GGNNCC 1 cut(s) 177
NspI RCATGY 1 cut(s) 316
PciI ACATGT 1 cut(s) 312
PcsI WCGNNNNNNNCGW 1 cut(s) 141
PfeI GAWTC 1 cut(s) 63
PleI GAGTC 3 cut(s) 52, 140, 455
PpsI GAGTC 3 cut(s) 52, 140, 455
PscI ACATGT 1 cut(s) 312
Psp6I CCWGG 4 cut(s) 85, 138, 148, 231
PspGI CCWGG 4 cut(s) 85, 138, 148, 231
PspN4I GGNNCC 1 cut(s) 177
RsaI GTAC 2 cut(s) 166, 311
RsaNI GTAC 2 cut(s) 165, 310
SalI GTCGAC 2 cut(s) 134, 438
Sau3AI GATC 2 cut(s) 248, 345
SchI GAGTC 3 cut(s) 53, 141, 455
ScrFI CCNGG 5 cut(s) 87, 140, 150, 233, 418
SduI GDGCHC 1 cut(s) 399
SexAI ACCWGGT 2 cut(s) 85, 231
SfaNI GCATC 1 cut(s) 135
Sse9I AATT 2 cut(s) 109, 222
StyD4I CCNGG 5 cut(s) 85, 138, 148, 231, 416
TaaI ACNGT 1 cut(s) 55
TaqI TCGA 2 cut(s) 135, 439
TasI AATT 2 cut(s) 109, 222
TatI WGTACW 1 cut(s) 164
TfiI GAWTC 1 cut(s) 63
TscAI CASTG 1 cut(s) 196
TspDTI ATGAA 1 cut(s) 33
TspRI CASTG 1 cut(s) 196
XapI RAATTY 1 cut(s) 109
XceI RCATGY 1 cut(s) 316
XcmI CCANNNNNNNNNTGG 1 cut(s) 146
XmiI GTMKAC 2 cut(s) 135, 439
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.