Rorug05G0389500

Acyl-coenzyme A thioesterase 13-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000478
Physical Location & Seq
Reverse (-)
52996218 .. 52998107
1890 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0389500.1

Sequence Viewer

Length: 519 bp
ATGGCAACGCCGAAACAGTTATGGGAGCAGCAGCAATTGCAGATGCAGCGTGTCAAGAACTCCGGTGCCATTGTTAGTTACAATGGGAGTCCGGTTGATGACAAGGAAGAAGAGATGTCAAGGTCTGCATTGGCTATTTTTCGTGTCAAGGAGGAAGAGATTGAGAGGAAGAAGATGGAGGTGAGAGACAAGGTTCAAGCTCAGCTGGGACGAGCTGAAGAAGCAAGTAGGCGCTTAGCTGAGATTCGTGAAGAGCTTGAAGCACTGACAGATCCCATGAGAAAGGAAGTTGCAAATATTCGGAAGAGAATAGATATAGTTAACAAAGATTTAAAGCCGCTGGGACAGAGCTGCCAGAGGAAGGAAAAGGAATACAAGGAAGCAGTTGAGGCTTTGAATGAGAAGAACAGAGAGAAAGCTCAACTACTTTCCAGATTGATGGAGCTTGTGGGTGAAAGTGAGAAAATGAGGATGAAGAAGCTGGAGGAGCTGAACAAACATGTTGAAACTCTGCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
4HBT

Protein Analysis

172

Amino Acids

20.19

Weight (kDa)

8.89

Isoelectric Point (pI)

61.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transcrip_act PF04949 21 - 170 2.9e-72 Transcriptional activator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000478)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29590
fragaria_vesca FvH4_3g37930 FvH4_3g37930 FvH4_3g37970 FvH4_3g37990 FvH4_3g37990 FvH4_3g38000 FvH4_3g38010 FvH4_3g38050 FvH4_3g38060
malus_domestica MD03G1077300.v1.1 MD03G1077400.v1.1 MD03G1077500.v1.1 MD08G1031500.v1.1 MD11G1081500.v1.1 MD11G1081600.v1.1 MD11G1081700.v1.1 MD11G1081800.v1.1 MD11G1081900.v1.1
prunus_persica Prupe.6G061800_v2.0.a1 Prupe.6G061900_v2.0.a1 Prupe.6G062000_v2.0.a1 Prupe.6G062000_v2.0.a1 Prupe.6G062100_v2.0.a1 Prupe.6G062100_v2.0.a1 Prupe.6G062200_v2.0.a1 Prupe.6G062300_v2.0.a1
pyrus_communis pycom03g06110 pycom03g06120 pycom03g06130 pycom11g06960 pycom11g06970 pycom11g06980 pycom11g07020
rosa_chinensis RchiOBHm_Chr5g0068361 RchiOBHm_Chr5g0068381 RchiOBHm_Chr5g0068391 RchiOBHm_Chr5g0068401 RchiOBHm_Chr5g0068411 RchiOBHm_Chr5g0068441
rosa_laevigata RLG00000035969 RLG00000035971 RLG00000035972 RLG00000035973 RLG00000035974
rosa_multiflora Rmu_sc0001418.1_g000002 Rmu_sc0003450.1_g000002 Rmu_sc0003450.1_g000003 Rmu_sc0003450.1_g000004 Rmu_sc0003450.1_g000007 Rmu_sc0005087.1_g000001 Rmu_sc0006054.1_g000001
rosa_roxburghii Rroxscaffold_1G00012370 Rroxscaffold_1G00012380 Rroxscaffold_1G00012390 Rroxscaffold_1G00012400 Rroxscaffold_1G00012420 Rroxscaffold_1G00013110 Rroxscaffold_1G00013120 Rroxscaffold_1G00013130 Rroxscaffold_1G00013150 Rroxscaffold_1G00013160
rosa_rugosa Rorug05G0389200 Rorug05G0389400 Rorug05G0389500 Rorug05G0389600 Rorug05G0389600
rosa_samantha Rh5AG447900 Rh5AG448100 Rh5AG448200 Rh5AG448300 Rh5AG448400 Rh5BG465700 Rh5BG465900 Rh5BG466200 Rh5BG466300 Rh5BG466700 Rh5CG487500 Rh5CG487800 Rh5CG487900 Rh5CG488300 Rh5DG479500 Rh5DG479700 Rh5DG479800 Rh5DG480100
rosa_wichuraiana Rw5G041800 Rw5G041830 Rw5G041840 Rw5G041850 Rw5G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 65
AciI CCGC 1 cut(s) 338
AclWI GGATC 1 cut(s) 266
AcuI CTGAAG 1 cut(s) 237
AfiI CCNNNNNNNGG 1 cut(s) 361
AflIII ACRYGT 1 cut(s) 499
AgsI TTSAA 4 cut(s) 197, 260, 397, 506
Alw26I GTCTC 1 cut(s) 180
AlwI GGATC 1 cut(s) 266
ApeKI GCWGC 4 cut(s) 28, 31, 46, 351
AspLEI GCGC 1 cut(s) 234
AsuHPI GGTGA 2 cut(s) 193, 464
BanI GGYRCC 1 cut(s) 65
BbvI GCAGC 4 cut(s) 40, 43, 58, 338
BccI CCATC 2 cut(s) 169, 433
BcoDI GTCTC 1 cut(s) 180
BfoI RGCGCY 1 cut(s) 235
BisI GCNGC 5 cut(s) 29, 32, 47, 338, 352
BlpI GCTNAGC 2 cut(s) 201, 235
BlsI GCNGC 5 cut(s) 30, 33, 48, 339, 353
BmiI GGNNCC 1 cut(s) 67
BmsI GCATC 1 cut(s) 33
BpmI CTGGAG 1 cut(s) 503
Bpu1102I GCTNAGC 2 cut(s) 201, 235
BsaWI WCCGGW 2 cut(s) 62, 91
Bsc4I CCNNNNNNNGG 1 cut(s) 361
BseGI GGATG 1 cut(s) 477
BseLI CCNNNNNNNGG 1 cut(s) 361
BseMII CTCAG 2 cut(s) 215, 231
BseRI GAGGAG 1 cut(s) 500
BseXI GCAGC 4 cut(s) 40, 43, 58, 338
BseYI CCCAGC 2 cut(s) 205, 340
BshNI GGYRCC 1 cut(s) 65
BsiSI CCGG 2 cut(s) 63, 92
BslFI GGGAC 2 cut(s) 222, 357
BslI CCNNNNNNNGG 1 cut(s) 361
BsmAI GTCTC 1 cut(s) 180
BsmFI GGGAC 2 cut(s) 222, 357
Bsp143I GATC 1 cut(s) 271
Bsp1720I GCTNAGC 2 cut(s) 201, 235
BspACI CCGC 1 cut(s) 338
BspCNI CTCAG 2 cut(s) 214, 232
BspLI GGNNCC 1 cut(s) 67
BspPI GGATC 1 cut(s) 266
BspQI GCTCTTC 1 cut(s) 246
BspT107I GGYRCC 1 cut(s) 65
BssMI GATC 1 cut(s) 271
Bst4CI ACNGT 1 cut(s) 18
Bst6I CTCTTC 4 cut(s) 105, 150, 246, 299
BstAPI GCANNNNNTGC 1 cut(s) 37
BstDEI CTNAG 3 cut(s) 201, 235, 240
BstF5I GGATG 1 cut(s) 477
BstH2I RGCGCY 1 cut(s) 235
BstHHI GCGC 1 cut(s) 234
BstKTI GATC 1 cut(s) 274
BstMAI GTCTC 1 cut(s) 180
BstMBI GATC 1 cut(s) 271
BstMWI GCNNNNNNNGC 5 cut(s) 37, 46, 221, 389, 487
BstNSI RCATGY 1 cut(s) 503
BstV1I GCAGC 4 cut(s) 40, 43, 58, 338
BstX2I RGATCY 1 cut(s) 271
BstXI CCANNNNNNTGG 1 cut(s) 439
BstYI RGATCY 1 cut(s) 271
BtsCI GGATG 1 cut(s) 477
BtsIMutI CAGTG 1 cut(s) 263
CfoI GCGC 1 cut(s) 234
CviAII CATG 2 cut(s) 277, 500
DdeI CTNAG 3 cut(s) 201, 235, 240
DpnI GATC 1 cut(s) 273
DpnII GATC 1 cut(s) 271
DraI TTTAAA 1 cut(s) 333
Eam1104I CTCTTC 4 cut(s) 105, 150, 246, 299
EarI CTCTTC 4 cut(s) 105, 150, 246, 299
Eco57I CTGAAG 1 cut(s) 237
FaeI CATG 2 cut(s) 280, 503
FaiI YATR 4 cut(s) 22, 278, 317, 501
FaqI GGGAC 2 cut(s) 222, 357
FatI CATG 2 cut(s) 276, 499
Fnu4HI GCNGC 5 cut(s) 29, 32, 47, 338, 352
FokI GGATG 1 cut(s) 484
Fsp4HI GCNGC 5 cut(s) 29, 32, 47, 338, 352
GlaI GCGC 1 cut(s) 233
GluI GCNGC 5 cut(s) 29, 32, 47, 338, 352
GsaI CCCAGC 2 cut(s) 209, 344
GsuI CTGGAG 1 cut(s) 503
HaeII RGCGCY 1 cut(s) 235
HapII CCGG 2 cut(s) 63, 92
HhaI GCGC 1 cut(s) 234
Hin1II CATG 2 cut(s) 280, 503
Hin6I GCGC 1 cut(s) 232
HinP1I GCGC 1 cut(s) 232
HincII GTYRAC 1 cut(s) 322
HindII GTYRAC 1 cut(s) 322
HinfI GANTC 2 cut(s) 88, 244
HpaI GTTAAC 1 cut(s) 322
HpaII CCGG 2 cut(s) 63, 92
HphI GGTGA 2 cut(s) 193, 464
Hpy166II GTNNAC 1 cut(s) 322
Hpy188I TCNGA 1 cut(s) 303
Hpy188III TCNNGA 3 cut(s) 55, 248, 432
Hpy8I GTNNAC 1 cut(s) 322
HpyAV CCTTC 1 cut(s) 355
HpyCH4III ACNGT 1 cut(s) 18
HpyCH4V TGCA 4 cut(s) 40, 46, 128, 293
HpyF10VI GCNNNNNNNGC 5 cut(s) 37, 46, 221, 389, 487
HpyF3I CTNAG 3 cut(s) 201, 235, 240
Hsp92II CATG 2 cut(s) 280, 503
HspAI GCGC 1 cut(s) 232
KspAI GTTAAC 1 cut(s) 322
Kzo9I GATC 1 cut(s) 271
LguI GCTCTTC 1 cut(s) 246
LmnI GCTCC 3 cut(s) 25, 442, 487
LpnPI CCDG 7 cut(s) 76, 105, 191, 326, 368, 445, 467
Lsp1109I GCAGC 4 cut(s) 40, 43, 58, 338
LweI GCATC 1 cut(s) 33
MaeIII GTNAC 1 cut(s) 77
MalI GATC 1 cut(s) 273
MboI GATC 1 cut(s) 271
MfeI CAATTG 1 cut(s) 35
MflI RGATCY 1 cut(s) 271
MluCI AATT 1 cut(s) 35
MlyI GAGTC 1 cut(s) 97
MnlI CCTC 7 cut(s) 145, 159, 172, 351, 382, 462, 478
MseI TTAA 3 cut(s) 321, 332, 517
MspA1I CMGCKG 2 cut(s) 205, 340
MspI CCGG 2 cut(s) 63, 92
MunI CAATTG 1 cut(s) 35
MwoI GCNNNNNNNGC 5 cut(s) 37, 46, 221, 389, 487
NdeII GATC 1 cut(s) 271
NlaIII CATG 2 cut(s) 280, 503
NlaIV GGNNCC 1 cut(s) 67
NspI RCATGY 1 cut(s) 503
PciI ACATGT 1 cut(s) 499
PciSI GCTCTTC 1 cut(s) 246
PfeI GAWTC 1 cut(s) 244
PkrI GCNGC 5 cut(s) 30, 33, 48, 339, 353
PleI GAGTC 1 cut(s) 96
PpsI GAGTC 1 cut(s) 96
PscI ACATGT 1 cut(s) 499
PspFI CCCAGC 2 cut(s) 205, 340
PspN4I GGNNCC 1 cut(s) 67
PsuI RGATCY 1 cut(s) 271
PvuII CAGCTG 1 cut(s) 205
SapI GCTCTTC 1 cut(s) 246
SaqAI TTAA 3 cut(s) 321, 332, 517
SatI GCNGC 5 cut(s) 29, 32, 47, 338, 352
Sau3AI GATC 1 cut(s) 271
SchI GAGTC 1 cut(s) 97
SfaNI GCATC 1 cut(s) 33
Sse9I AATT 1 cut(s) 35
SsiI CCGC 1 cut(s) 338
SspI AATATT 1 cut(s) 298
TaaI ACNGT 1 cut(s) 18
TasI AATT 1 cut(s) 35
TauI GCSGC 1 cut(s) 340
TfiI GAWTC 1 cut(s) 244
Tru1I TTAA 3 cut(s) 321, 332, 517
Tru9I TTAA 3 cut(s) 321, 332, 517
TscAI CASTG 1 cut(s) 270
TseI GCWGC 4 cut(s) 28, 31, 46, 351
TspDTI ATGAA 1 cut(s) 488
TspRI CASTG 1 cut(s) 270
XceI RCATGY 1 cut(s) 503
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.