MD11G1081600.v1.1

Acyl-coenzyme A thioesterase 13-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0000478
Physical Location & Seq
Forward (+)
6949339 .. 6951200
1862 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1081600.v1.1.491

Sequence Viewer

Length: 492 bp
ATGAGAGAAGAGAGTTTGGCTCCGAAATTGGAGGATGCAAAGAAGTATCTGGAGGTGACGCAGGACGAGTTAGAGGCCGTGTCGCGACTCGTTTTTCCAAGCGACAGACTCATATACGATAATTTCGTTGAGTCAGGCATCCGAGTTGACCGAGTCCAACCCGGATTCGTCGTCTGCACTTTCAAAGTCCCTCCCCGCCTCACCGATAGAGCTGGAAATCTGGCGAATGGTGCAATTGCAACCCTTGTTGATGTAGTTGGTGCCTCTACTGTTTTTGTTCCACATATCCCTATGACCGTTTCAGTGGACATGTCCATCTCGTACATGGCAAAGGCGAAGCTTAATGATGAGCTAGAGATCACCTCAAAACGGTTAGGACAAAGAGGACGTTACTATGGAACCTATGTACTTCTACGAAACAAAGCATCTGGGGAGATTATTGCTGAAGGTCGACATTCGTTGTTTCGTCCATCTTCTACCAGCAAACTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
4HBT

Protein Analysis

164

Amino Acids

18.11

Weight (kDa)

8.68

Isoelectric Point (pI)

35.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
4HBT PF03061 72 - 123 9.2e-06 Thioesterase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000478)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29590
fragaria_vesca FvH4_3g37930 FvH4_3g37930 FvH4_3g37970 FvH4_3g37990 FvH4_3g37990 FvH4_3g38000 FvH4_3g38010 FvH4_3g38050 FvH4_3g38060
malus_domestica MD03G1077300.v1.1 MD03G1077400.v1.1 MD03G1077500.v1.1 MD08G1031500.v1.1 MD11G1081500.v1.1 MD11G1081600.v1.1 MD11G1081700.v1.1 MD11G1081800.v1.1 MD11G1081900.v1.1
prunus_persica Prupe.6G061800_v2.0.a1 Prupe.6G061900_v2.0.a1 Prupe.6G062000_v2.0.a1 Prupe.6G062000_v2.0.a1 Prupe.6G062100_v2.0.a1 Prupe.6G062100_v2.0.a1 Prupe.6G062200_v2.0.a1 Prupe.6G062300_v2.0.a1
pyrus_communis pycom03g06110 pycom03g06120 pycom03g06130 pycom11g06960 pycom11g06970 pycom11g06980 pycom11g07020
rosa_chinensis RchiOBHm_Chr5g0068361 RchiOBHm_Chr5g0068381 RchiOBHm_Chr5g0068391 RchiOBHm_Chr5g0068401 RchiOBHm_Chr5g0068411 RchiOBHm_Chr5g0068441
rosa_laevigata RLG00000035969 RLG00000035971 RLG00000035972 RLG00000035973 RLG00000035974
rosa_multiflora Rmu_sc0001418.1_g000002 Rmu_sc0003450.1_g000002 Rmu_sc0003450.1_g000003 Rmu_sc0003450.1_g000004 Rmu_sc0003450.1_g000007 Rmu_sc0005087.1_g000001 Rmu_sc0006054.1_g000001
rosa_roxburghii Rroxscaffold_1G00012370 Rroxscaffold_1G00012380 Rroxscaffold_1G00012390 Rroxscaffold_1G00012400 Rroxscaffold_1G00012420 Rroxscaffold_1G00013110 Rroxscaffold_1G00013120 Rroxscaffold_1G00013130 Rroxscaffold_1G00013150 Rroxscaffold_1G00013160
rosa_rugosa Rorug05G0389200 Rorug05G0389400 Rorug05G0389500 Rorug05G0389600 Rorug05G0389600
rosa_samantha Rh5AG447900 Rh5AG448100 Rh5AG448200 Rh5AG448300 Rh5AG448400 Rh5BG465700 Rh5BG465900 Rh5BG466200 Rh5BG466300 Rh5BG466700 Rh5CG487500 Rh5CG487800 Rh5CG487900 Rh5CG488300 Rh5DG479500 Rh5DG479700 Rh5DG479800 Rh5DG480100
rosa_wichuraiana Rw5G041800 Rw5G041830 Rw5G041840 Rw5G041850 Rw5G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 260
AccI GTMKAC 1 cut(s) 451
AccII CGCG 1 cut(s) 85
AciI CCGC 1 cut(s) 196
AcuI CTGAAG 1 cut(s) 465
AfaI GTAC 2 cut(s) 323, 408
AfiI CCNNNNNNNGG 1 cut(s) 369
AflIII ACRYGT 1 cut(s) 309
AgsI TTSAA 1 cut(s) 184
AluBI AGCT 3 cut(s) 212, 340, 352
AluI AGCT 3 cut(s) 212, 340, 352
AoxI GGCC 1 cut(s) 75
AsuC2I CCSGG 1 cut(s) 162
AsuHPI GGTGA 3 cut(s) 67, 193, 352
BanI GGYRCC 1 cut(s) 260
BccI CCATC 2 cut(s) 323, 478
BceAI ACGGC 1 cut(s) 62
BcnI CCSGG 1 cut(s) 162
BfaI CTAG 1 cut(s) 353
Bme1390I CCNGG 1 cut(s) 162
BmiI GGNNCC 3 cut(s) 21, 262, 400
BmrFI CCNGG 1 cut(s) 162
BmsI GCATC 3 cut(s) 25, 147, 434
BplI GAGNNNNNCTC 3 cut(s) 36, 347, 379
BpmI CTGGAG 1 cut(s) 71
BpuMI CCSGG 1 cut(s) 162
Bsc4I CCNNNNNNNGG 1 cut(s) 369
BseGI GGATG 2 cut(s) 40, 138
BseLI CCNNNNNNNGG 1 cut(s) 369
BsgI GTGCAG 1 cut(s) 160
Bsh1236I CGCG 1 cut(s) 85
BshFI GGCC 1 cut(s) 77
BshNI GGYRCC 1 cut(s) 260
BsiSI CCGG 1 cut(s) 162
BslFI GGGAC 1 cut(s) 173
BslI CCNNNNNNNGG 1 cut(s) 369
BsmFI GGGAC 1 cut(s) 173
BsnI GGCC 1 cut(s) 77
Bsp143I GATC 1 cut(s) 357
Bsp68I TCGCGA 1 cut(s) 85
BspACI CCGC 1 cut(s) 196
BspANI GGCC 1 cut(s) 77
BspFNI CGCG 1 cut(s) 85
BspLI GGNNCC 3 cut(s) 21, 262, 400
BspT107I GGYRCC 1 cut(s) 260
BssMI GATC 1 cut(s) 357
Bst4CI ACNGT 3 cut(s) 271, 298, 372
Bst6I CTCTTC 1 cut(s) 3
BstF5I GGATG 2 cut(s) 40, 138
BstFNI CGCG 1 cut(s) 85
BstKTI GATC 1 cut(s) 360
BstMBI GATC 1 cut(s) 357
BstMWI GCNNNNNNNGC 1 cut(s) 230
BstNSI RCATGY 1 cut(s) 313
BstSCI CCNGG 1 cut(s) 160
BstUI CGCG 1 cut(s) 85
BsuRI GGCC 1 cut(s) 77
BtsCI GGATG 2 cut(s) 40, 138
BtsIMutI CAGTG 1 cut(s) 309
BtuMI TCGCGA 1 cut(s) 85
CseI GACGC 1 cut(s) 67
Csp6I GTAC 2 cut(s) 322, 407
CviAII CATG 2 cut(s) 310, 325
CviJI RGCY 5 cut(s) 20, 77, 212, 340, 352
CviKI_1 RGCY 5 cut(s) 20, 77, 212, 340, 352
CviQI GTAC 2 cut(s) 322, 407
DpnI GATC 1 cut(s) 359
DpnII GATC 1 cut(s) 357
Eam1104I CTCTTC 1 cut(s) 3
EarI CTCTTC 1 cut(s) 3
Eco57I CTGAAG 1 cut(s) 465
FaeI CATG 2 cut(s) 313, 328
FaiI YATR 8 cut(s) 113, 115, 285, 293, 311, 326, 396, 405
FaqI GGGAC 1 cut(s) 173
FatI CATG 2 cut(s) 309, 324
FauI CCCGC 1 cut(s) 203
FblI GTMKAC 1 cut(s) 451
FokI GGATG 2 cut(s) 47, 125
FspBI CTAG 1 cut(s) 353
GsuI CTGGAG 1 cut(s) 71
HaeIII GGCC 1 cut(s) 77
HapII CCGG 1 cut(s) 162
HgaI GACGC 1 cut(s) 67
Hin1II CATG 2 cut(s) 313, 328
HincII GTYRAC 2 cut(s) 148, 452
HindII GTYRAC 2 cut(s) 148, 452
HindIII AAGCTT 1 cut(s) 338
HinfI GANTC 5 cut(s) 87, 108, 131, 153, 165
HpaII CCGG 1 cut(s) 162
HphI GGTGA 3 cut(s) 67, 193, 352
Hpy166II GTNNAC 3 cut(s) 148, 307, 452
Hpy188I TCNGA 3 cut(s) 24, 143, 491
Hpy188III TCNNGA 2 cut(s) 50, 84
Hpy8I GTNNAC 3 cut(s) 148, 307, 452
Hpy99I CGWCG 1 cut(s) 173
HpyAV CCTTC 1 cut(s) 440
HpyCH4III ACNGT 3 cut(s) 271, 298, 372
HpyCH4IV ACGT 1 cut(s) 388
HpyCH4V TGCA 4 cut(s) 38, 177, 233, 239
HpyF10VI GCNNNNNNNGC 1 cut(s) 230
HpySE526I ACGT 1 cut(s) 388
Hsp92II CATG 2 cut(s) 313, 328
Kzo9I GATC 1 cut(s) 357
LmnI GCTCC 1 cut(s) 25
LpnPI CCDG 7 cut(s) 35, 47, 120, 175, 198, 206, 414
LweI GCATC 3 cut(s) 25, 147, 434
MaeI CTAG 1 cut(s) 353
MaeII ACGT 1 cut(s) 388
MaeIII GTNAC 2 cut(s) 55, 389
MalI GATC 1 cut(s) 359
MboI GATC 1 cut(s) 357
MboII GAAGA 2 cut(s) 20, 465
MfeI CAATTG 1 cut(s) 234
MluCI AATT 3 cut(s) 26, 121, 234
MlyI GAGTC 4 cut(s) 81, 102, 140, 162
MmeI TCCRAC 1 cut(s) 181
MnlI CCTC 8 cut(s) 25, 46, 67, 201, 209, 274, 373, 377
MseI TTAA 1 cut(s) 342
MspI CCGG 1 cut(s) 162
MspR9I CCNGG 1 cut(s) 162
MunI CAATTG 1 cut(s) 234
MvnI CGCG 1 cut(s) 85
MwoI GCNNNNNNNGC 1 cut(s) 230
NciI CCSGG 1 cut(s) 162
NdeII GATC 1 cut(s) 357
NlaIII CATG 2 cut(s) 313, 328
NlaIV GGNNCC 3 cut(s) 21, 262, 400
NmuCI GTSAC 1 cut(s) 55
NruI TCGCGA 1 cut(s) 85
NspI RCATGY 1 cut(s) 313
PciI ACATGT 1 cut(s) 309
PcsI WCGNNNNNNNCGW 1 cut(s) 123
PfeI GAWTC 1 cut(s) 165
PflFI GACNNNGTC 1 cut(s) 152
PleI GAGTC 4 cut(s) 81, 102, 139, 161
PpsI GAGTC 4 cut(s) 81, 102, 139, 161
PscI ACATGT 1 cut(s) 309
PspN4I GGNNCC 3 cut(s) 21, 262, 400
PsyI GACNNNGTC 1 cut(s) 152
RruI TCGCGA 1 cut(s) 85
RsaI GTAC 2 cut(s) 323, 408
RsaNI GTAC 2 cut(s) 322, 407
SalI GTCGAC 1 cut(s) 450
SaqAI TTAA 1 cut(s) 342
Sau3AI GATC 1 cut(s) 357
SchI GAGTC 4 cut(s) 81, 102, 140, 162
ScrFI CCNGG 1 cut(s) 162
SetI ASST 8 cut(s) 57, 214, 342, 354, 365, 391, 404, 451
SfaNI GCATC 3 cut(s) 25, 147, 434
Sse9I AATT 3 cut(s) 26, 121, 234
SsiI CCGC 1 cut(s) 196
SspMI CTAG 1 cut(s) 353
StyD4I CCNGG 1 cut(s) 160
TaaI ACNGT 3 cut(s) 271, 298, 372
TaiI ACGT 1 cut(s) 391
TaqI TCGA 1 cut(s) 451
TaqII GACCGA 1 cut(s) 165
TasI AATT 3 cut(s) 26, 121, 234
TatI WGTACW 1 cut(s) 406
TfiI GAWTC 1 cut(s) 165
Tru1I TTAA 1 cut(s) 342
Tru9I TTAA 1 cut(s) 342
TscAI CASTG 1 cut(s) 309
TseFI GTSAC 1 cut(s) 55
Tsp45I GTSAC 1 cut(s) 55
TspRI CASTG 1 cut(s) 309
Tth111I GACNNNGTC 1 cut(s) 152
XceI RCATGY 1 cut(s) 313
XcmI CCANNNNNNNNNTGG 1 cut(s) 322
XmiI GTMKAC 1 cut(s) 451
XspI CTAG 1 cut(s) 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.