MD11G1081900.v1.1

Acyl-coenzyme A thioesterase 13-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0000478
Physical Location & Seq
Forward (+)
6980559 .. 6983236
2678 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1081900.v1.1.491

Sequence Viewer

Length: 510 bp
ATGGATACGAATGAACGAGGTAGTGCTAATATGGAGAGGGCGAAGATGTTCCTGGGGCTGACGCCGGACGAGTCAGAGGCTGTGTCGCGACTCGCTGTTCCAGAACGGCAGGCCGGCGAGGGAAAGAGCTTCTACGACGCTTTCGCTCTTGCGGGAATGCGAGTCGTCCGAGTCGAACCCGGACTCGTCGTATGTTCTTTCAAGGTCCCTCCCCGACTCACTGACAGAAGTGGAAACTTGGCAAATGGTGCGATTGCAAACCTTGTCGATGTCGTTGGAATTTCTTTAGAATATGGCGAGGGACTCCCTATGATTGTTACAATCGACATGTCTATCTCGTATCTTTCTACAGCGAAGATTGATGACGAGCTCGAGATCACCTCAAAAAGATTAGGAAACAGAGGAGGTTATACTGGAACGGTGGTAGTTTTGAGAAACAAAACAACAGGGGAGATTATTGCTGAAGGTCGACTTTCGATGTTCCGTGCACTTGGTTCTAGCAAACTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
4HBT

Protein Analysis

170

Amino Acids

18.15

Weight (kDa)

5.62

Isoelectric Point (pI)

23.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000478)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29590
fragaria_vesca FvH4_3g37930 FvH4_3g37930 FvH4_3g37970 FvH4_3g37990 FvH4_3g37990 FvH4_3g38000 FvH4_3g38010 FvH4_3g38050 FvH4_3g38060
malus_domestica MD03G1077300.v1.1 MD03G1077400.v1.1 MD03G1077500.v1.1 MD08G1031500.v1.1 MD11G1081500.v1.1 MD11G1081600.v1.1 MD11G1081700.v1.1 MD11G1081800.v1.1 MD11G1081900.v1.1
prunus_persica Prupe.6G061800_v2.0.a1 Prupe.6G061900_v2.0.a1 Prupe.6G062000_v2.0.a1 Prupe.6G062000_v2.0.a1 Prupe.6G062100_v2.0.a1 Prupe.6G062100_v2.0.a1 Prupe.6G062200_v2.0.a1 Prupe.6G062300_v2.0.a1
pyrus_communis pycom03g06110 pycom03g06120 pycom03g06130 pycom11g06960 pycom11g06970 pycom11g06980 pycom11g07020
rosa_chinensis RchiOBHm_Chr5g0068361 RchiOBHm_Chr5g0068381 RchiOBHm_Chr5g0068391 RchiOBHm_Chr5g0068401 RchiOBHm_Chr5g0068411 RchiOBHm_Chr5g0068441
rosa_laevigata RLG00000035969 RLG00000035971 RLG00000035972 RLG00000035973 RLG00000035974
rosa_multiflora Rmu_sc0001418.1_g000002 Rmu_sc0003450.1_g000002 Rmu_sc0003450.1_g000003 Rmu_sc0003450.1_g000004 Rmu_sc0003450.1_g000007 Rmu_sc0005087.1_g000001 Rmu_sc0006054.1_g000001
rosa_roxburghii Rroxscaffold_1G00012370 Rroxscaffold_1G00012380 Rroxscaffold_1G00012390 Rroxscaffold_1G00012400 Rroxscaffold_1G00012420 Rroxscaffold_1G00013110 Rroxscaffold_1G00013120 Rroxscaffold_1G00013130 Rroxscaffold_1G00013150 Rroxscaffold_1G00013160
rosa_rugosa Rorug05G0389200 Rorug05G0389400 Rorug05G0389500 Rorug05G0389600 Rorug05G0389600
rosa_samantha Rh5AG447900 Rh5AG448100 Rh5AG448200 Rh5AG448300 Rh5AG448400 Rh5BG465700 Rh5BG465900 Rh5BG466200 Rh5BG466300 Rh5BG466700 Rh5CG487500 Rh5CG487800 Rh5CG487900 Rh5CG488300 Rh5DG479500 Rh5DG479700 Rh5DG479800 Rh5DG480100
rosa_wichuraiana Rw5G041800 Rw5G041830 Rw5G041840 Rw5G041850 Rw5G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 469
AccII CGCG 1 cut(s) 88
AciI CCGC 1 cut(s) 152
AcsI RAATTY 1 cut(s) 279
AcuI CTGAAG 1 cut(s) 483
AcyI GRCGYC 1 cut(s) 62
AflIII ACRYGT 1 cut(s) 327
AgsI TTSAA 1 cut(s) 202
AjnI CCWGG 1 cut(s) 51
AluBI AGCT 2 cut(s) 129, 370
AluI AGCT 2 cut(s) 129, 370
Alw21I GWGCWC 2 cut(s) 372, 490
Alw44I GTGCAC 1 cut(s) 486
AlwNI CAGNNNCTG 1 cut(s) 80
Ama87I CYCGRG 1 cut(s) 371
AoxI GGCC 1 cut(s) 111
ApaLI GTGCAC 1 cut(s) 486
ApoI RAATTY 1 cut(s) 279
Asp700I GAANNNNTTC 1 cut(s) 47
AspS9I GGNCC 1 cut(s) 205
AsuC2I CCSGG 1 cut(s) 180
AsuHPI GGTGA 1 cut(s) 370
AvaI CYCGRG 1 cut(s) 371
AvaII GGWCC 1 cut(s) 205
BaeGI GKGCMC 1 cut(s) 490
BanII GRGCYC 1 cut(s) 372
Bbv12I GWGCWC 2 cut(s) 372, 490
BceAI ACGGC 1 cut(s) 122
BciT130I CCWGG 1 cut(s) 53
BcnI CCSGG 1 cut(s) 180
BfaI CTAG 1 cut(s) 498
BfmI CTRYAG 1 cut(s) 348
Bme1390I CCNGG 2 cut(s) 53, 180
Bme18I GGWCC 1 cut(s) 205
BmeT110I CYCGRG 1 cut(s) 371
BmgT120I GGNCC 1 cut(s) 205
BmiI GGNNCC 1 cut(s) 207
BmrFI CCNGG 2 cut(s) 53, 180
BplI GAGNNNNNCTC 2 cut(s) 365, 397
BpuMI CCSGG 1 cut(s) 180
BsaHI GRCGYC 1 cut(s) 62
BsaJI CCNNGG 1 cut(s) 52
Bse118I RCCGGY 1 cut(s) 113
Bse1I ACTGG 1 cut(s) 418
BseBI CCWGG 1 cut(s) 53
BseDI CCNNGG 1 cut(s) 52
BseNI ACTGG 1 cut(s) 418
BseRI GAGGAG 1 cut(s) 417
BseSI GKGCMC 1 cut(s) 490
Bsh1236I CGCG 1 cut(s) 88
BshFI GGCC 1 cut(s) 113
BsiHKAI GWGCWC 2 cut(s) 372, 490
BsiHKCI CYCGRG 1 cut(s) 371
BsiSI CCGG 3 cut(s) 65, 114, 180
BslFI GGGAC 2 cut(s) 191, 315
BsmFI GGGAC 2 cut(s) 191, 315
BsmI GAATGC 1 cut(s) 162
BsnI GGCC 1 cut(s) 113
BsoBI CYCGRG 1 cut(s) 371
Bsp1286I GDGCHC 2 cut(s) 372, 490
Bsp143I GATC 1 cut(s) 375
Bsp68I TCGCGA 1 cut(s) 88
BspACI CCGC 1 cut(s) 152
BspANI GGCC 1 cut(s) 113
BspFNI CGCG 1 cut(s) 88
BspLI GGNNCC 1 cut(s) 207
BsrFI RCCGGY 1 cut(s) 113
BsrI ACTGG 1 cut(s) 418
BssAI RCCGGY 1 cut(s) 113
BssECI CCNNGG 1 cut(s) 52
BssMI GATC 1 cut(s) 375
BssNI GRCGYC 1 cut(s) 62
Bst2UI CCWGG 1 cut(s) 53
Bst4CI ACNGT 2 cut(s) 421, 507
BstACI GRCGYC 1 cut(s) 62
BstAPI GCANNNNNTGC 1 cut(s) 248
BstC8I GCNNGC 2 cut(s) 111, 115
BstFNI CGCG 1 cut(s) 88
BstKTI GATC 1 cut(s) 378
BstMBI GATC 1 cut(s) 375
BstMWI GCNNNNNNNGC 1 cut(s) 248
BstNI CCWGG 1 cut(s) 53
BstNSI RCATGY 1 cut(s) 331
BstSCI CCNGG 2 cut(s) 51, 178
BstSFI CTRYAG 1 cut(s) 348
BstSLI GKGCMC 1 cut(s) 490
BstUI CGCG 1 cut(s) 88
BsuRI GGCC 1 cut(s) 113
BtsIMutI CAGTG 1 cut(s) 219
BtuMI TCGCGA 1 cut(s) 88
Cac8I GCNNGC 2 cut(s) 111, 115
CaiI CAGNNNCTG 1 cut(s) 80
Cfr10I RCCGGY 1 cut(s) 113
Cfr13I GGNCC 1 cut(s) 205
CseI GACGC 2 cut(s) 70, 146
CviAII CATG 1 cut(s) 328
CviJI RGCY 5 cut(s) 58, 80, 113, 129, 370
CviKI_1 RGCY 5 cut(s) 58, 80, 113, 129, 370
DpnI GATC 1 cut(s) 377
DpnII GATC 1 cut(s) 375
Ecl136II GAGCTC 1 cut(s) 370
Eco24I GRGCYC 1 cut(s) 372
Eco47I GGWCC 1 cut(s) 205
Eco53kI GAGCTC 1 cut(s) 370
Eco57I CTGAAG 1 cut(s) 483
Eco88I CYCGRG 1 cut(s) 371
EcoICRI GAGCTC 1 cut(s) 370
EcoO109I RGGNCCY 1 cut(s) 205
EcoRII CCWGG 1 cut(s) 51
EcoT38I GRGCYC 1 cut(s) 372
FaeI CATG 1 cut(s) 331
FaiI YATR 6 cut(s) 32, 193, 294, 311, 329, 411
FalI AAGNNNNNCTT 2 cut(s) 456, 488
FaqI GGGAC 2 cut(s) 191, 315
FatI CATG 1 cut(s) 327
FauI CCCGC 1 cut(s) 145
FblI GTMKAC 1 cut(s) 469
FriOI GRGCYC 1 cut(s) 372
FspBI CTAG 1 cut(s) 498
HaeIII GGCC 1 cut(s) 113
HapII CCGG 3 cut(s) 65, 114, 180
HgaI GACGC 2 cut(s) 70, 146
Hin1I GRCGYC 1 cut(s) 62
Hin1II CATG 1 cut(s) 331
HincII GTYRAC 1 cut(s) 470
HindII GTYRAC 1 cut(s) 470
HinfI GANTC 7 cut(s) 71, 90, 162, 171, 183, 216, 303
HpaII CCGG 3 cut(s) 65, 114, 180
HphI GGTGA 1 cut(s) 370
Hpy166II GTNNAC 2 cut(s) 470, 488
Hpy188I TCNGA 2 cut(s) 76, 170
Hpy188III TCNNGA 3 cut(s) 87, 101, 373
Hpy8I GTNNAC 2 cut(s) 470, 488
Hpy99I CGWCG 2 cut(s) 140, 191
HpyAV CCTTC 1 cut(s) 458
HpyCH4III ACNGT 2 cut(s) 421, 507
HpyCH4V TGCA 2 cut(s) 257, 488
HpyF10VI GCNNNNNNNGC 1 cut(s) 248
Hsp92I GRCGYC 1 cut(s) 62
Hsp92II CATG 1 cut(s) 331
KroI GCCGGC 1 cut(s) 113
KroNI GCCGGC 1 cut(s) 115
Kzo9I GATC 1 cut(s) 375
LpnPI CCDG 9 cut(s) 38, 65, 78, 95, 114, 127, 193, 399, 432
MaeI CTAG 1 cut(s) 498
MaeIII GTNAC 1 cut(s) 316
MalI GATC 1 cut(s) 377
MboI GATC 1 cut(s) 375
MboII GAAGA 2 cut(s) 55, 367
MhlI GDGCHC 2 cut(s) 372, 490
MluCI AATT 1 cut(s) 279
MlyI GAGTC 7 cut(s) 80, 84, 171, 177, 180, 210, 297
MmeI TCCRAC 1 cut(s) 256
MnlI CCTC 9 cut(s) 11, 30, 70, 112, 219, 292, 391, 395, 398
MroNI GCCGGC 1 cut(s) 113
MroXI GAANNNNTTC 1 cut(s) 47
MspI CCGG 3 cut(s) 65, 114, 180
MspR9I CCNGG 2 cut(s) 53, 180
Mva1269I GAATGC 1 cut(s) 162
MvaI CCWGG 1 cut(s) 53
MvnI CGCG 1 cut(s) 88
MwoI GCNNNNNNNGC 1 cut(s) 248
NaeI GCCGGC 1 cut(s) 115
NciI CCSGG 1 cut(s) 180
NdeII GATC 1 cut(s) 375
NgoMIV GCCGGC 1 cut(s) 113
NlaIII CATG 1 cut(s) 331
NlaIV GGNNCC 1 cut(s) 207
NruI TCGCGA 1 cut(s) 88
NspI RCATGY 1 cut(s) 331
PaeR7I CTCGAG 1 cut(s) 371
PciI ACATGT 1 cut(s) 327
PcsI WCGNNNNNNNCGW 1 cut(s) 171
PctI GAATGC 1 cut(s) 162
PdiI GCCGGC 1 cut(s) 115
PdmI GAANNNNTTC 1 cut(s) 47
PleI GAGTC 7 cut(s) 79, 84, 170, 177, 179, 210, 297
PpsI GAGTC 7 cut(s) 79, 84, 170, 177, 179, 210, 297
PpuMI RGGWCCY 1 cut(s) 205
PscI ACATGT 1 cut(s) 327
Psp124BI GAGCTC 1 cut(s) 372
Psp5II RGGWCCY 1 cut(s) 205
Psp6I CCWGG 1 cut(s) 51
PspGI CCWGG 1 cut(s) 51
PspN4I GGNNCC 1 cut(s) 207
PspPI GGNCC 1 cut(s) 205
PspPPI RGGWCCY 1 cut(s) 205
PstNI CAGNNNCTG 1 cut(s) 80
RruI TCGCGA 1 cut(s) 88
SacI GAGCTC 1 cut(s) 372
SalI GTCGAC 1 cut(s) 468
Sau3AI GATC 1 cut(s) 375
Sau96I GGNCC 1 cut(s) 205
SchI GAGTC 7 cut(s) 80, 84, 171, 177, 180, 210, 297
ScrFI CCNGG 2 cut(s) 53, 180
SduI GDGCHC 2 cut(s) 372, 490
SetI ASST 8 cut(s) 22, 131, 207, 264, 372, 383, 409, 469
SfcI CTRYAG 1 cut(s) 348
Sfr274I CTCGAG 1 cut(s) 371
SinI GGWCC 1 cut(s) 205
SlaI CTCGAG 1 cut(s) 371
SmlI CTYRAG 1 cut(s) 371
SmoI CTYRAG 1 cut(s) 371
Sse9I AATT 1 cut(s) 279
SsiI CCGC 1 cut(s) 152
SspMI CTAG 1 cut(s) 498
SstI GAGCTC 1 cut(s) 372
StyD4I CCNGG 2 cut(s) 51, 178
TaaI ACNGT 2 cut(s) 421, 507
TaqI TCGA 6 cut(s) 174, 267, 324, 372, 469, 476
TasI AATT 1 cut(s) 279
TscAI CASTG 1 cut(s) 226
TspDTI ATGAA 1 cut(s) 27
TspGWI ACGGA 1 cut(s) 473
TspRI CASTG 1 cut(s) 226
VneI GTGCAC 1 cut(s) 486
VpaK11BI GGWCC 1 cut(s) 205
XapI RAATTY 1 cut(s) 279
XceI RCATGY 1 cut(s) 331
XhoI CTCGAG 1 cut(s) 371
XmiI GTMKAC 1 cut(s) 469
XmnI GAANNNNTTC 1 cut(s) 47
XspI CTAG 1 cut(s) 498
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.