Rroxscaffold_1G00012400

Acyl-coenzyme A thioesterase 13-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000478
Physical Location & Seq
Forward (+)
15267074 .. 15268757
1684 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00012400.1

Sequence Viewer

Length: 480 bp
ATGGAGAAGAAGGTGAAGGAGTTTCTGGAGCTGAGCCAGGACGAGTCAGAGGCCGTGTCACGAATCGTTATTCCACCCCAGCGACCAGGCACCGCGAGTTTGTATGAGGATTTCGCTCTCAGAAGCATCCGAGTCGACCGAGTCGAACCCGGACTCGTCGTCTGTACGCTCAAGGTTCCTCCCCGCCTCACCGATAGAGCTGGAAATTTGGCTAAAGGTGCCATTGCAAATGTTGTTGATGTGGTTGGTGGTTATGTAACTTATGTTGAGGGTCTCCCAATGTATGTTTCAGTAGACATATCGATCTCCTATATATCAACTGCAAAGCTTGATGATGAGCTAGAGATCACCTCACAAAGGTTAGGACAAAGAGGTGCTTATTATGGAGCAATAGTGCTTCTGAGAAACAAAGCAACTGGGGAGATTATTGCTGAGGGCCGTCATTCAATGTTTCGTCCACGGTCTACTCACAAACTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
4HBT

Protein Analysis

159

Amino Acids

17.55

Weight (kDa)

7.83

Isoelectric Point (pI)

31.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000478)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29590
fragaria_vesca FvH4_3g37930 FvH4_3g37930 FvH4_3g37970 FvH4_3g37990 FvH4_3g37990 FvH4_3g38000 FvH4_3g38010 FvH4_3g38050 FvH4_3g38060
malus_domestica MD03G1077300.v1.1 MD03G1077400.v1.1 MD03G1077500.v1.1 MD08G1031500.v1.1 MD11G1081500.v1.1 MD11G1081600.v1.1 MD11G1081700.v1.1 MD11G1081800.v1.1 MD11G1081900.v1.1
prunus_persica Prupe.6G061800_v2.0.a1 Prupe.6G061900_v2.0.a1 Prupe.6G062000_v2.0.a1 Prupe.6G062000_v2.0.a1 Prupe.6G062100_v2.0.a1 Prupe.6G062100_v2.0.a1 Prupe.6G062200_v2.0.a1 Prupe.6G062300_v2.0.a1
pyrus_communis pycom03g06110 pycom03g06120 pycom03g06130 pycom11g06960 pycom11g06970 pycom11g06980 pycom11g07020
rosa_chinensis RchiOBHm_Chr5g0068361 RchiOBHm_Chr5g0068381 RchiOBHm_Chr5g0068391 RchiOBHm_Chr5g0068401 RchiOBHm_Chr5g0068411 RchiOBHm_Chr5g0068441
rosa_laevigata RLG00000035969 RLG00000035971 RLG00000035972 RLG00000035973 RLG00000035974
rosa_multiflora Rmu_sc0001418.1_g000002 Rmu_sc0003450.1_g000002 Rmu_sc0003450.1_g000003 Rmu_sc0003450.1_g000004 Rmu_sc0003450.1_g000007 Rmu_sc0005087.1_g000001 Rmu_sc0006054.1_g000001
rosa_roxburghii Rroxscaffold_1G00012370 Rroxscaffold_1G00012380 Rroxscaffold_1G00012390 Rroxscaffold_1G00012400 Rroxscaffold_1G00012420 Rroxscaffold_1G00013110 Rroxscaffold_1G00013120 Rroxscaffold_1G00013130 Rroxscaffold_1G00013150 Rroxscaffold_1G00013160
rosa_rugosa Rorug05G0389200 Rorug05G0389400 Rorug05G0389500 Rorug05G0389600 Rorug05G0389600
rosa_samantha Rh5AG447900 Rh5AG448100 Rh5AG448200 Rh5AG448300 Rh5AG448400 Rh5BG465700 Rh5BG465900 Rh5BG466200 Rh5BG466300 Rh5BG466700 Rh5CG487500 Rh5CG487800 Rh5CG487900 Rh5CG488300 Rh5DG479500 Rh5DG479700 Rh5DG479800 Rh5DG480100
rosa_wichuraiana Rw5G041800 Rw5G041830 Rw5G041840 Rw5G041850 Rw5G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 89, 218
AccI GTMKAC 3 cut(s) 135, 294, 464
AccII CGCG 1 cut(s) 95
AciI CCGC 2 cut(s) 93, 184
AcsI RAATTY 1 cut(s) 205
AfaI GTAC 1 cut(s) 166
AfiI CCNNNNNNNGG 1 cut(s) 357
AgsI TTSAA 1 cut(s) 447
AhdI GACNNNNNGTC 1 cut(s) 158
AjnI CCWGG 2 cut(s) 36, 85
AjuI GAANNNNNNNTTGG 2 cut(s) 271, 303
AluBI AGCT 4 cut(s) 31, 200, 328, 340
AluI AGCT 4 cut(s) 31, 200, 328, 340
Alw26I GTCTC 1 cut(s) 278
AoxI GGCC 2 cut(s) 51, 436
ApoI RAATTY 1 cut(s) 205
AspS9I GGNCC 1 cut(s) 436
AsuC2I CCSGG 1 cut(s) 150
AsuHPI GGTGA 3 cut(s) 25, 181, 340
BanI GGYRCC 2 cut(s) 89, 218
BbvCI CCTCAGC 1 cut(s) 432
BceAI ACGGC 2 cut(s) 38, 423
BcgI CGANNNNNNTGC 2 cut(s) 115, 149
BciT130I CCWGG 2 cut(s) 38, 87
BcnI CCSGG 1 cut(s) 150
BcoDI GTCTC 1 cut(s) 278
BfaI CTAG 1 cut(s) 341
BlpI GCTNAGC 1 cut(s) 32
Bme1390I CCNGG 3 cut(s) 38, 87, 150
BmeRI GACNNNNNGTC 1 cut(s) 158
BmgT120I GGNCC 1 cut(s) 436
BmiI GGNNCC 3 cut(s) 91, 177, 220
BmrFI CCNGG 3 cut(s) 38, 87, 150
BmrI ACTGGG 1 cut(s) 426
BmsI GCATC 1 cut(s) 135
BmuI ACTGGG 1 cut(s) 426
BplI GAGNNNNNCTC 2 cut(s) 335, 367
BpmI CTGGAG 1 cut(s) 47
Bpu10I CCTNAGC 1 cut(s) 432
Bpu1102I GCTNAGC 1 cut(s) 32
BpuEI CTTGAG 1 cut(s) 155
BpuMI CCSGG 1 cut(s) 150
Bsa29I ATCGAT 1 cut(s) 302
BsaI GGTCTC 1 cut(s) 278
BsaJI CCNNGG 1 cut(s) 458
BsaXI ACNNNNNCTCC 2 cut(s) 378, 408
Bsc4I CCNNNNNNNGG 1 cut(s) 357
Bse1I ACTGG 1 cut(s) 421
Bse3DI GCAATG 1 cut(s) 222
BseBI CCWGG 2 cut(s) 38, 87
BseCI ATCGAT 1 cut(s) 302
BseDI CCNNGG 1 cut(s) 458
BseGI GGATG 1 cut(s) 126
BseLI CCNNNNNNNGG 1 cut(s) 357
BseMI GCAATG 1 cut(s) 222
BseMII CTCAG 4 cut(s) 23, 133, 392, 423
BseNI ACTGG 1 cut(s) 421
BseYI CCCAGC 1 cut(s) 78
Bsh1236I CGCG 1 cut(s) 95
Bsh1285I CGRYCG 1 cut(s) 139
BshFI GGCC 2 cut(s) 53, 438
BshNI GGYRCC 2 cut(s) 89, 218
BshVI ATCGAT 1 cut(s) 302
BsiEI CGRYCG 1 cut(s) 139
BsiSI CCGG 1 cut(s) 150
BslI CCNNNNNNNGG 1 cut(s) 357
BsmAI GTCTC 1 cut(s) 278
BsnI GGCC 2 cut(s) 53, 438
Bso31I GGTCTC 1 cut(s) 278
Bsp143I GATC 2 cut(s) 303, 345
Bsp1720I GCTNAGC 1 cut(s) 32
BspACI CCGC 2 cut(s) 93, 184
BspANI GGCC 2 cut(s) 53, 438
BspCNI CTCAG 4 cut(s) 24, 132, 393, 424
BspDI ATCGAT 1 cut(s) 302
BspFNI CGCG 1 cut(s) 95
BspLI GGNNCC 3 cut(s) 91, 177, 220
BspT107I GGYRCC 2 cut(s) 89, 218
BspTNI GGTCTC 1 cut(s) 278
BsrDI GCAATG 1 cut(s) 222
BsrI ACTGG 1 cut(s) 421
BssECI CCNNGG 1 cut(s) 458
BssMI GATC 2 cut(s) 303, 345
Bst2UI CCWGG 2 cut(s) 38, 87
Bst4CI ACNGT 1 cut(s) 462
BstDEI CTNAG 4 cut(s) 32, 119, 401, 432
BstDSI CCRYGG 1 cut(s) 458
BstENI CCTNNNNNAGG 1 cut(s) 355
BstF5I GGATG 1 cut(s) 126
BstFNI CGCG 1 cut(s) 95
BstKTI GATC 2 cut(s) 306, 348
BstMAI GTCTC 1 cut(s) 278
BstMBI GATC 2 cut(s) 303, 345
BstMCI CGRYCG 1 cut(s) 139
BstMWI GCNNNNNNNGC 1 cut(s) 218
BstNI CCWGG 2 cut(s) 38, 87
BstSCI CCNGG 3 cut(s) 36, 85, 148
BstUI CGCG 1 cut(s) 95
Bsu15I ATCGAT 1 cut(s) 302
BsuRI GGCC 2 cut(s) 53, 438
BsuTUI ATCGAT 1 cut(s) 302
BtgI CCRYGG 1 cut(s) 458
BtsCI GGATG 1 cut(s) 126
Cfr13I GGNCC 1 cut(s) 436
ClaI ATCGAT 1 cut(s) 302
Csp6I GTAC 1 cut(s) 165
CviJI RGCY 8 cut(s) 31, 36, 53, 200, 212, 328, 340, 438
CviKI_1 RGCY 8 cut(s) 31, 36, 53, 200, 212, 328, 340, 438
CviQI GTAC 1 cut(s) 165
DdeI CTNAG 4 cut(s) 32, 119, 401, 432
DpnI GATC 2 cut(s) 305, 347
DpnII GATC 2 cut(s) 303, 345
DriI GACNNNNNGTC 1 cut(s) 158
Eam1105I GACNNNNNGTC 1 cut(s) 158
Eco31I GGTCTC 1 cut(s) 278
EcoNI CCTNNNNNAGG 1 cut(s) 355
EcoRII CCWGG 2 cut(s) 36, 85
FaiI YATR 8 cut(s) 105, 255, 264, 285, 299, 312, 314, 384
FalI AAGNNNNNCTT 2 cut(s) 361, 393
FauI CCCGC 1 cut(s) 191
FblI GTMKAC 3 cut(s) 135, 294, 464
FokI GGATG 1 cut(s) 113
FspBI CTAG 1 cut(s) 341
GsaI CCCAGC 1 cut(s) 82
GsuI CTGGAG 1 cut(s) 47
HaeIII GGCC 2 cut(s) 53, 438
HapII CCGG 1 cut(s) 150
HincII GTYRAC 1 cut(s) 136
HindII GTYRAC 1 cut(s) 136
HindIII AAGCTT 1 cut(s) 326
HinfI GANTC 5 cut(s) 44, 63, 132, 141, 153
HpaII CCGG 1 cut(s) 150
HphI GGTGA 3 cut(s) 25, 181, 340
Hpy166II GTNNAC 4 cut(s) 136, 295, 458, 465
Hpy188I TCNGA 4 cut(s) 49, 122, 131, 402
Hpy188III TCNNGA 2 cut(s) 26, 60
Hpy8I GTNNAC 4 cut(s) 136, 295, 458, 465
Hpy99I CGWCG 1 cut(s) 161
HpyAV CCTTC 2 cut(s) 4, 10
HpyCH4III ACNGT 1 cut(s) 462
HpyCH4V TGCA 2 cut(s) 227, 323
HpyF10VI GCNNNNNNNGC 1 cut(s) 218
HpyF3I CTNAG 4 cut(s) 32, 119, 401, 432
Kzo9I GATC 2 cut(s) 303, 345
LmnI GCTCC 2 cut(s) 28, 386
LpnPI CCDG 9 cut(s) 11, 23, 50, 72, 92, 99, 163, 186, 402
LweI GCATC 1 cut(s) 135
MaeI CTAG 1 cut(s) 341
MaeIII GTNAC 2 cut(s) 57, 256
MalI GATC 2 cut(s) 305, 347
MboI GATC 2 cut(s) 303, 345
MboII GAAGA 1 cut(s) 19
MluCI AATT 1 cut(s) 205
MlyI GAGTC 4 cut(s) 53, 141, 147, 150
MnlI CCTC 8 cut(s) 43, 100, 189, 197, 262, 361, 365, 427
MspI CCGG 1 cut(s) 150
MspR9I CCNGG 3 cut(s) 38, 87, 150
MvaI CCWGG 2 cut(s) 38, 87
MvnI CGCG 1 cut(s) 95
MwoI GCNNNNNNNGC 1 cut(s) 218
NciI CCSGG 1 cut(s) 150
NdeII GATC 2 cut(s) 303, 345
NlaIV GGNNCC 3 cut(s) 91, 177, 220
NmuCI GTSAC 1 cut(s) 57
PcsI WCGNNNNNNNCGW 1 cut(s) 141
PfeI GAWTC 1 cut(s) 63
PflFI GACNNNGTC 1 cut(s) 140
PleI GAGTC 4 cut(s) 52, 140, 147, 149
PpsI GAGTC 4 cut(s) 52, 140, 147, 149
Psp6I CCWGG 2 cut(s) 36, 85
PspFI CCCAGC 1 cut(s) 78
PspGI CCWGG 2 cut(s) 36, 85
PspN4I GGNNCC 3 cut(s) 91, 177, 220
PspPI GGNCC 1 cut(s) 436
PsyI GACNNNGTC 1 cut(s) 140
RsaI GTAC 1 cut(s) 166
RsaNI GTAC 1 cut(s) 165
SalI GTCGAC 1 cut(s) 134
Sau3AI GATC 2 cut(s) 303, 345
Sau96I GGNCC 1 cut(s) 436
SchI GAGTC 4 cut(s) 53, 141, 147, 150
ScrFI CCNGG 3 cut(s) 38, 87, 150
SfaNI GCATC 1 cut(s) 135
SmlI CTYRAG 1 cut(s) 170
SmoI CTYRAG 1 cut(s) 170
Sse9I AATT 1 cut(s) 205
SsiI CCGC 2 cut(s) 93, 184
SspMI CTAG 1 cut(s) 341
StyD4I CCNGG 3 cut(s) 36, 85, 148
TaaI ACNGT 1 cut(s) 462
TaqI TCGA 3 cut(s) 135, 144, 302
TaqII GACCGA 1 cut(s) 153
TasI AATT 1 cut(s) 205
TfiI GAWTC 1 cut(s) 63
TseFI GTSAC 1 cut(s) 57
Tsp45I GTSAC 1 cut(s) 57
Tth111I GACNNNGTC 1 cut(s) 140
XagI CCTNNNNNAGG 1 cut(s) 355
XapI RAATTY 1 cut(s) 205
XmiI GTMKAC 3 cut(s) 135, 294, 464
XspI CTAG 1 cut(s) 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.