Rroxscaffold_1G00012420

Acyl-coenzyme A thioesterase 13-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000478
Physical Location & Seq
Forward (+)
15279719 .. 15281337
1619 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00012420.1

Sequence Viewer

Length: 375 bp
ATGCCCTTAGGAGTGAGTGAGTCGATCAGGGACGGATCCCACAATATTCAGATGGCCAAGGAGTACCTGAATCTGACCGACCAGGACTCAGAGGCCGTATCGCAACTCGACATTGCAGCTCAACGAGTCGGAGTCGGGGTCGGGTTCTACGAGGTCTTCGCTCTTCAAGGCATCCGAGTCGAACCCGGACTCGTCGTTTGTTCTTTCAAGGTCCCTCCCCGCCTCACCGATGAATTAGAGATCACCTCAAAGAGGCTAGGACAAAGAGGACGTTACTTTGGAACAATAGTGGTGCTGAAAAACAAAGCAACTGGGGAGATTATTGCTGAAGGTCGACATTCATTGTTTCGTTCAAATTTTGTTCCCAAACTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
4HBT

Protein Analysis

124

Amino Acids

13.68

Weight (kDa)

7.89

Isoelectric Point (pI)

41.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000478)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29590
fragaria_vesca FvH4_3g37930 FvH4_3g37930 FvH4_3g37970 FvH4_3g37990 FvH4_3g37990 FvH4_3g38000 FvH4_3g38010 FvH4_3g38050 FvH4_3g38060
malus_domestica MD03G1077300.v1.1 MD03G1077400.v1.1 MD03G1077500.v1.1 MD08G1031500.v1.1 MD11G1081500.v1.1 MD11G1081600.v1.1 MD11G1081700.v1.1 MD11G1081800.v1.1 MD11G1081900.v1.1
prunus_persica Prupe.6G061800_v2.0.a1 Prupe.6G061900_v2.0.a1 Prupe.6G062000_v2.0.a1 Prupe.6G062000_v2.0.a1 Prupe.6G062100_v2.0.a1 Prupe.6G062100_v2.0.a1 Prupe.6G062200_v2.0.a1 Prupe.6G062300_v2.0.a1
pyrus_communis pycom03g06110 pycom03g06120 pycom03g06130 pycom11g06960 pycom11g06970 pycom11g06980 pycom11g07020
rosa_chinensis RchiOBHm_Chr5g0068361 RchiOBHm_Chr5g0068381 RchiOBHm_Chr5g0068391 RchiOBHm_Chr5g0068401 RchiOBHm_Chr5g0068411 RchiOBHm_Chr5g0068441
rosa_laevigata RLG00000035969 RLG00000035971 RLG00000035972 RLG00000035973 RLG00000035974
rosa_multiflora Rmu_sc0001418.1_g000002 Rmu_sc0003450.1_g000002 Rmu_sc0003450.1_g000003 Rmu_sc0003450.1_g000004 Rmu_sc0003450.1_g000007 Rmu_sc0005087.1_g000001 Rmu_sc0006054.1_g000001
rosa_roxburghii Rroxscaffold_1G00012370 Rroxscaffold_1G00012380 Rroxscaffold_1G00012390 Rroxscaffold_1G00012400 Rroxscaffold_1G00012420 Rroxscaffold_1G00013110 Rroxscaffold_1G00013120 Rroxscaffold_1G00013130 Rroxscaffold_1G00013150 Rroxscaffold_1G00013160
rosa_rugosa Rorug05G0389200 Rorug05G0389400 Rorug05G0389500 Rorug05G0389600 Rorug05G0389600
rosa_samantha Rh5AG447900 Rh5AG448100 Rh5AG448200 Rh5AG448300 Rh5AG448400 Rh5BG465700 Rh5BG465900 Rh5BG466200 Rh5BG466300 Rh5BG466700 Rh5CG487500 Rh5CG487800 Rh5CG487900 Rh5CG488300 Rh5DG479500 Rh5DG479700 Rh5DG479800 Rh5DG480100
rosa_wichuraiana Rw5G041800 Rw5G041830 Rw5G041840 Rw5G041850 Rw5G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 334
AciI CCGC 1 cut(s) 220
AclWI GGATC 2 cut(s) 30, 43
AcoI YGGCCR 1 cut(s) 54
AcsI RAATTY 1 cut(s) 355
AcuI CTGAAG 1 cut(s) 348
AfaI GTAC 1 cut(s) 65
AfiI CCNNNNNNNGG 1 cut(s) 252
AgsI TTSAA 3 cut(s) 167, 208, 354
AjnI CCWGG 1 cut(s) 81
AluBI AGCT 1 cut(s) 119
AluI AGCT 1 cut(s) 119
AlwI GGATC 2 cut(s) 30, 43
AoxI GGCC 2 cut(s) 54, 93
ApeKI GCWGC 1 cut(s) 116
ApoI RAATTY 1 cut(s) 355
ArsI GACNNNNNNTTYG 2 cut(s) 180, 212
AspS9I GGNCC 1 cut(s) 211
AsuC2I CCSGG 1 cut(s) 186
AsuHPI GGTGA 2 cut(s) 217, 235
AvaII GGWCC 1 cut(s) 211
AxyI CCTNAGG 1 cut(s) 7
BalI TGGCCA 1 cut(s) 56
BamHI GGATCC 1 cut(s) 35
BbsI GAAGAC 1 cut(s) 148
BbvI GCAGC 1 cut(s) 128
BccI CCATC 1 cut(s) 46
BceAI ACGGC 1 cut(s) 80
BcgI CGANNNNNNTGC 2 cut(s) 160, 194
BciT130I CCWGG 1 cut(s) 83
BcnI CCSGG 1 cut(s) 186
BfaI CTAG 1 cut(s) 257
BisI GCNGC 1 cut(s) 117
BlsI GCNGC 1 cut(s) 118
Bme1390I CCNGG 2 cut(s) 83, 186
Bme18I GGWCC 1 cut(s) 211
BmgT120I GGNCC 1 cut(s) 211
BmiI GGNNCC 2 cut(s) 37, 213
BmrFI CCNGG 2 cut(s) 83, 186
BmrI ACTGGG 1 cut(s) 321
BmsI GCATC 1 cut(s) 180
BmuI ACTGGG 1 cut(s) 321
BpiI GAAGAC 1 cut(s) 148
BplI GAGNNNNNCTC 2 cut(s) 230, 262
BpuMI CCSGG 1 cut(s) 186
BsaJI CCNNGG 1 cut(s) 57
BsaXI ACNNNNNCTCC 2 cut(s) 123, 153
Bsc4I CCNNNNNNNGG 1 cut(s) 252
Bse1I ACTGG 1 cut(s) 316
Bse21I CCTNAGG 1 cut(s) 7
Bse3DI GCAATG 1 cut(s) 111
BseBI CCWGG 1 cut(s) 83
BseDI CCNNGG 1 cut(s) 57
BseGI GGATG 1 cut(s) 171
BseLI CCNNNNNNNGG 1 cut(s) 252
BseMI GCAATG 1 cut(s) 111
BseMII CTCAG 1 cut(s) 102
BseNI ACTGG 1 cut(s) 316
BseXI GCAGC 1 cut(s) 128
BshFI GGCC 2 cut(s) 56, 95
BsiSI CCGG 1 cut(s) 186
BslFI GGGAC 2 cut(s) 44, 197
BslI CCNNNNNNNGG 1 cut(s) 252
BsmFI GGGAC 2 cut(s) 44, 197
BsnI GGCC 2 cut(s) 56, 95
Bsp143I GATC 3 cut(s) 24, 35, 240
BspACI CCGC 1 cut(s) 220
BspANI GGCC 2 cut(s) 56, 95
BspCNI CTCAG 1 cut(s) 101
BspLI GGNNCC 2 cut(s) 37, 213
BspPI GGATC 2 cut(s) 30, 43
BspQI GCTCTTC 1 cut(s) 168
BsrDI GCAATG 1 cut(s) 111
BsrI ACTGG 1 cut(s) 316
BssECI CCNNGG 1 cut(s) 57
BssMI GATC 3 cut(s) 24, 35, 240
BssT1I CCWWGG 1 cut(s) 57
Bst2UI CCWGG 1 cut(s) 83
Bst6I CTCTTC 1 cut(s) 168
BstDEI CTNAG 2 cut(s) 7, 88
BstENI CCTNNNNNAGG 1 cut(s) 250
BstF5I GGATG 1 cut(s) 171
BstKTI GATC 3 cut(s) 27, 38, 243
BstMBI GATC 3 cut(s) 24, 35, 240
BstNI CCWGG 1 cut(s) 83
BstSCI CCNGG 2 cut(s) 81, 184
BstV1I GCAGC 1 cut(s) 128
BstV2I GAAGAC 1 cut(s) 148
BstX2I RGATCY 1 cut(s) 35
BstYI RGATCY 1 cut(s) 35
Bsu36I CCTNAGG 1 cut(s) 7
BsuRI GGCC 2 cut(s) 56, 95
BtsCI GGATG 1 cut(s) 171
Cfr13I GGNCC 1 cut(s) 211
Csp6I GTAC 1 cut(s) 64
CviJI RGCY 4 cut(s) 56, 95, 119, 256
CviKI_1 RGCY 4 cut(s) 56, 95, 119, 256
CviQI GTAC 1 cut(s) 64
DdeI CTNAG 2 cut(s) 7, 88
DpnI GATC 3 cut(s) 26, 37, 242
DpnII GATC 3 cut(s) 24, 35, 240
EaeI YGGCCR 1 cut(s) 54
Eam1104I CTCTTC 1 cut(s) 168
EarI CTCTTC 1 cut(s) 168
Eco130I CCWWGG 1 cut(s) 57
Eco47I GGWCC 1 cut(s) 211
Eco57I CTGAAG 1 cut(s) 348
Eco81I CCTNAGG 1 cut(s) 7
EcoNI CCTNNNNNAGG 1 cut(s) 250
EcoO109I RGGNCCY 1 cut(s) 211
EcoRII CCWGG 1 cut(s) 81
EcoT14I CCWWGG 1 cut(s) 57
ErhI CCWWGG 1 cut(s) 57
FaqI GGGAC 2 cut(s) 44, 197
FauI CCCGC 1 cut(s) 227
FblI GTMKAC 1 cut(s) 334
Fnu4HI GCNGC 1 cut(s) 117
FokI GGATG 1 cut(s) 158
Fsp4HI GCNGC 1 cut(s) 117
FspBI CTAG 1 cut(s) 257
GluI GCNGC 1 cut(s) 117
HaeIII GGCC 2 cut(s) 56, 95
HapII CCGG 1 cut(s) 186
HincII GTYRAC 1 cut(s) 335
HindII GTYRAC 1 cut(s) 335
HinfI GANTC 7 cut(s) 20, 70, 86, 126, 132, 177, 189
HpaII CCGG 1 cut(s) 186
HphI GGTGA 2 cut(s) 217, 235
Hpy166II GTNNAC 1 cut(s) 335
Hpy188I TCNGA 6 cut(s) 51, 75, 91, 131, 176, 374
Hpy8I GTNNAC 1 cut(s) 335
Hpy99I CGWCG 1 cut(s) 197
HpyAV CCTTC 1 cut(s) 323
HpyCH4IV ACGT 1 cut(s) 271
HpyCH4V TGCA 1 cut(s) 116
HpyF3I CTNAG 2 cut(s) 7, 88
HpySE526I ACGT 1 cut(s) 271
Kzo9I GATC 3 cut(s) 24, 35, 240
LguI GCTCTTC 1 cut(s) 168
LpnPI CCDG 6 cut(s) 13, 68, 80, 95, 199, 297
Lsp1109I GCAGC 1 cut(s) 128
LweI GCATC 1 cut(s) 180
MaeI CTAG 1 cut(s) 257
MaeII ACGT 1 cut(s) 271
MaeIII GTNAC 1 cut(s) 272
MalI GATC 3 cut(s) 26, 37, 242
MboI GATC 3 cut(s) 24, 35, 240
MboII GAAGA 2 cut(s) 148, 155
MflI RGATCY 1 cut(s) 35
MlsI TGGCCA 1 cut(s) 56
MluCI AATT 2 cut(s) 233, 355
MluNI TGGCCA 1 cut(s) 56
MlyI GAGTC 6 cut(s) 29, 80, 135, 141, 183, 186
MmeI TCCRAC 1 cut(s) 109
MnlI CCTC 7 cut(s) 85, 145, 225, 233, 246, 256, 260
Mox20I TGGCCA 1 cut(s) 56
MscI TGGCCA 1 cut(s) 56
Msp20I TGGCCA 1 cut(s) 56
MspI CCGG 1 cut(s) 186
MspR9I CCNGG 2 cut(s) 83, 186
MvaI CCWGG 1 cut(s) 83
NciI CCSGG 1 cut(s) 186
NdeII GATC 3 cut(s) 24, 35, 240
NlaIV GGNNCC 2 cut(s) 37, 213
PciSI GCTCTTC 1 cut(s) 168
PcsI WCGNNNNNNNCGW 1 cut(s) 147
PfeI GAWTC 1 cut(s) 70
PkrI GCNGC 1 cut(s) 118
PleI GAGTC 6 cut(s) 28, 80, 134, 140, 183, 185
PpsI GAGTC 6 cut(s) 28, 80, 134, 140, 183, 185
PpuMI RGGWCCY 1 cut(s) 211
Psp5II RGGWCCY 1 cut(s) 211
Psp6I CCWGG 1 cut(s) 81
PspGI CCWGG 1 cut(s) 81
PspN4I GGNNCC 2 cut(s) 37, 213
PspPI GGNCC 1 cut(s) 211
PspPPI RGGWCCY 1 cut(s) 211
PsuI RGATCY 1 cut(s) 35
RsaI GTAC 1 cut(s) 65
RsaNI GTAC 1 cut(s) 64
SalI GTCGAC 1 cut(s) 333
SapI GCTCTTC 1 cut(s) 168
SatI GCNGC 1 cut(s) 117
Sau3AI GATC 3 cut(s) 24, 35, 240
Sau96I GGNCC 1 cut(s) 211
SchI GAGTC 6 cut(s) 29, 80, 135, 141, 183, 186
ScrFI CCNGG 2 cut(s) 83, 186
SetI ASST 7 cut(s) 69, 121, 156, 213, 248, 274, 334
SfaNI GCATC 1 cut(s) 180
SinI GGWCC 1 cut(s) 211
Sse9I AATT 2 cut(s) 233, 355
SsiI CCGC 1 cut(s) 220
SspI AATATT 1 cut(s) 46
SspMI CTAG 1 cut(s) 257
StyD4I CCNGG 2 cut(s) 81, 184
StyI CCWWGG 1 cut(s) 57
TaiI ACGT 1 cut(s) 274
TaqI TCGA 4 cut(s) 23, 108, 180, 334
TaqII GACCGA 1 cut(s) 92
TasI AATT 2 cut(s) 233, 355
TfiI GAWTC 1 cut(s) 70
TseI GCWGC 1 cut(s) 116
TspDTI ATGAA 2 cut(s) 246, 330
TspGWI ACGGA 1 cut(s) 48
VpaK11BI GGWCC 1 cut(s) 211
XagI CCTNNNNNAGG 1 cut(s) 250
XapI RAATTY 1 cut(s) 355
XmiI GTMKAC 1 cut(s) 334
XspI CTAG 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.