pycom03g06120

Acyl-coenzyme A thioesterase 13-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0000478
Physical Location & Seq
Forward (+)
4855875 .. 4860189
4315 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g06120.3

Sequence Viewer

Length: 594 bp
ATGGTTTTTAATTCAACTAGTTGCTCTTTACATGTCAACGGTCAAGTCGCACTGAGTTGGTTTCCGATCCAATGGAATGAAGGTTATAGATTTGGGGAAAGGGAGGTCAAGATGGAGAAGGCGAAGAAGCGTCTGGAGCTGAACTCGGACGAGTCAGATACCGTGTCGCGAGTCGCCATCCCAGCTCTCCAAATCGGAAAGTCCAGCTTCTACGATGCCTTCGCTCTGAGAGGTATCCGAGTCGAGCGAGTCGAACCCGGTGTCGTCATCTGTTCTTTCAAGGTCCCTCCCCGCCTTATCGATAGAGATGGAAATTTGGCAAATGGTGCAATTGCAAACCTCGTTGATATAGTTGGTGGTTCCTTAGCTTTTATTCCGGGCCTCCCTATGAATGTTTCTGTCGACATATCCGTCTCTTATGTCTCAACTGCCAAGGTTCATGACGAACTAGAGATAACTTCGAGGGTTTTAGGACGAACAGGAGGTTACTGTGGAACAATAGTAACATTCAGAAATAAATCAACGGGAGAGATAATAGCTGAAGGTCGACATTCATTGTTTCGTTCAAATGCTGGTCCCGTTCCCAAACTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
4HBT

Protein Analysis

198

Amino Acids

21.47

Weight (kDa)

8.82

Isoelectric Point (pI)

26.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000478)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29590
fragaria_vesca FvH4_3g37930 FvH4_3g37930 FvH4_3g37970 FvH4_3g37990 FvH4_3g37990 FvH4_3g38000 FvH4_3g38010 FvH4_3g38050 FvH4_3g38060
malus_domestica MD03G1077300.v1.1 MD03G1077400.v1.1 MD03G1077500.v1.1 MD08G1031500.v1.1 MD11G1081500.v1.1 MD11G1081600.v1.1 MD11G1081700.v1.1 MD11G1081800.v1.1 MD11G1081900.v1.1
prunus_persica Prupe.6G061800_v2.0.a1 Prupe.6G061900_v2.0.a1 Prupe.6G062000_v2.0.a1 Prupe.6G062000_v2.0.a1 Prupe.6G062100_v2.0.a1 Prupe.6G062100_v2.0.a1 Prupe.6G062200_v2.0.a1 Prupe.6G062300_v2.0.a1
pyrus_communis pycom03g06110 pycom03g06120 pycom03g06130 pycom11g06960 pycom11g06970 pycom11g06980 pycom11g07020
rosa_chinensis RchiOBHm_Chr5g0068361 RchiOBHm_Chr5g0068381 RchiOBHm_Chr5g0068391 RchiOBHm_Chr5g0068401 RchiOBHm_Chr5g0068411 RchiOBHm_Chr5g0068441
rosa_laevigata RLG00000035969 RLG00000035971 RLG00000035972 RLG00000035973 RLG00000035974
rosa_multiflora Rmu_sc0001418.1_g000002 Rmu_sc0003450.1_g000002 Rmu_sc0003450.1_g000003 Rmu_sc0003450.1_g000004 Rmu_sc0003450.1_g000007 Rmu_sc0005087.1_g000001 Rmu_sc0006054.1_g000001
rosa_roxburghii Rroxscaffold_1G00012370 Rroxscaffold_1G00012380 Rroxscaffold_1G00012390 Rroxscaffold_1G00012400 Rroxscaffold_1G00012420 Rroxscaffold_1G00013110 Rroxscaffold_1G00013120 Rroxscaffold_1G00013130 Rroxscaffold_1G00013150 Rroxscaffold_1G00013160
rosa_rugosa Rorug05G0389200 Rorug05G0389400 Rorug05G0389500 Rorug05G0389600 Rorug05G0389600
rosa_samantha Rh5AG447900 Rh5AG448100 Rh5AG448200 Rh5AG448300 Rh5AG448400 Rh5BG465700 Rh5BG465900 Rh5BG466200 Rh5BG466300 Rh5BG466700 Rh5CG487500 Rh5CG487800 Rh5CG487900 Rh5CG488300 Rh5DG479500 Rh5DG479700 Rh5DG479800 Rh5DG480100
rosa_wichuraiana Rw5G041800 Rw5G041830 Rw5G041840 Rw5G041850 Rw5G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 410
AccI GTMKAC 2 cut(s) 402, 547
AccII CGCG 1 cut(s) 169
AciI CCGC 1 cut(s) 292
AclWI GGATC 1 cut(s) 61
AcsI RAATTY 1 cut(s) 313
AcuI CTGAAG 1 cut(s) 561
AflIII ACRYGT 1 cut(s) 31
AgsI TTSAA 3 cut(s) 15, 280, 567
AhlI ACTAGT 1 cut(s) 17
AluBI AGCT 5 cut(s) 139, 185, 207, 368, 539
AluI AGCT 5 cut(s) 139, 185, 207, 368, 539
Alw26I GTCTC 2 cut(s) 418, 427
AlwI GGATC 1 cut(s) 61
AoxI GGCC 1 cut(s) 379
ApoI RAATTY 1 cut(s) 313
ArsI GACNNNNNNTTYG 2 cut(s) 246, 278
AspS9I GGNCC 3 cut(s) 283, 379, 575
AsuC2I CCSGG 2 cut(s) 258, 378
AvaII GGWCC 2 cut(s) 283, 575
BccI CCATC 3 cut(s) 106, 185, 302
BciVI GTATCC 1 cut(s) 245
BcnI CCSGG 2 cut(s) 258, 378
BcoDI GTCTC 2 cut(s) 418, 427
BcuI ACTAGT 1 cut(s) 17
BfaI CTAG 2 cut(s) 18, 449
BfuI GTATCC 1 cut(s) 245
Bme1390I CCNGG 2 cut(s) 258, 378
Bme18I GGWCC 2 cut(s) 283, 575
BmgT120I GGNCC 3 cut(s) 283, 379, 575
BmiI GGNNCC 3 cut(s) 285, 361, 577
BmrFI CCNGG 2 cut(s) 258, 378
BmsI GCATC 1 cut(s) 205
BplI GAGNNNNNCTC 2 cut(s) 128, 160
BpmI CTGGAG 1 cut(s) 155
Bpu10I CCTNAGC 1 cut(s) 364
BpuMI CCSGG 2 cut(s) 258, 378
Bsa29I ATCGAT 1 cut(s) 300
BsaJI CCNNGG 1 cut(s) 432
BseCI ATCGAT 1 cut(s) 300
BseDI CCNNGG 1 cut(s) 432
BseGI GGATG 1 cut(s) 177
BseMII CTCAG 2 cut(s) 44, 218
BseYI CCCAGC 1 cut(s) 181
Bsh1236I CGCG 1 cut(s) 169
BshFI GGCC 1 cut(s) 381
BshVI ATCGAT 1 cut(s) 300
BsiSI CCGG 2 cut(s) 258, 377
BslFI GGGAC 2 cut(s) 269, 561
BsmAI GTCTC 2 cut(s) 418, 427
BsmBI CGTCTC 1 cut(s) 418
BsmFI GGGAC 2 cut(s) 269, 561
BsnI GGCC 1 cut(s) 381
Bsp143I GATC 1 cut(s) 66
Bsp68I TCGCGA 1 cut(s) 169
BspACI CCGC 1 cut(s) 292
BspANI GGCC 1 cut(s) 381
BspCNI CTCAG 2 cut(s) 45, 219
BspDI ATCGAT 1 cut(s) 300
BspFNI CGCG 1 cut(s) 169
BspHI TCATGA 1 cut(s) 439
BspLI GGNNCC 3 cut(s) 285, 361, 577
BspPI GGATC 1 cut(s) 61
BssECI CCNNGG 1 cut(s) 432
BssMI GATC 1 cut(s) 66
BssT1I CCWWGG 1 cut(s) 432
Bst4CI ACNGT 3 cut(s) 41, 163, 491
BstAPI GCANNNNNTGC 1 cut(s) 326
BstDEI CTNAG 3 cut(s) 53, 227, 364
BstF5I GGATG 1 cut(s) 177
BstFNI CGCG 1 cut(s) 169
BstKTI GATC 1 cut(s) 69
BstMAI GTCTC 2 cut(s) 418, 427
BstMBI GATC 1 cut(s) 66
BstMWI GCNNNNNNNGC 3 cut(s) 136, 182, 326
BstNSI RCATGY 1 cut(s) 35
BstSCI CCNGG 2 cut(s) 256, 376
BstUI CGCG 1 cut(s) 169
Bsu15I ATCGAT 1 cut(s) 300
BsuI GTATCC 1 cut(s) 245
BsuRI GGCC 1 cut(s) 381
BsuTUI ATCGAT 1 cut(s) 300
BtsCI GGATG 1 cut(s) 177
BtsIMutI CAGTG 1 cut(s) 50
BtuMI TCGCGA 1 cut(s) 169
CciI TCATGA 1 cut(s) 439
Cfr13I GGNCC 3 cut(s) 283, 379, 575
ClaI ATCGAT 1 cut(s) 300
CseI GACGC 1 cut(s) 119
CviAII CATG 2 cut(s) 32, 440
CviJI RGCY 6 cut(s) 139, 185, 207, 368, 381, 539
CviKI_1 RGCY 6 cut(s) 139, 185, 207, 368, 381, 539
DdeI CTNAG 3 cut(s) 53, 227, 364
DpnI GATC 1 cut(s) 68
DpnII GATC 1 cut(s) 66
DrdI GACNNNNNNGTC 1 cut(s) 410
DseDI GACNNNNNNGTC 1 cut(s) 410
Eco130I CCWWGG 1 cut(s) 432
Eco47I GGWCC 2 cut(s) 283, 575
Eco57I CTGAAG 1 cut(s) 561
EcoO109I RGGNCCY 1 cut(s) 283
EcoT14I CCWWGG 1 cut(s) 432
ErhI CCWWGG 1 cut(s) 432
Esp3I CGTCTC 1 cut(s) 418
FaeI CATG 2 cut(s) 35, 443
FaiI YATR 7 cut(s) 33, 87, 350, 389, 407, 420, 441
FalI AAGNNNNNCTT 2 cut(s) 191, 223
FaqI GGGAC 2 cut(s) 269, 561
FatI CATG 2 cut(s) 31, 439
FauI CCCGC 1 cut(s) 299
FblI GTMKAC 2 cut(s) 402, 547
FokI GGATG 1 cut(s) 164
FspBI CTAG 2 cut(s) 18, 449
GsaI CCCAGC 1 cut(s) 185
GsuI CTGGAG 1 cut(s) 155
HaeIII GGCC 1 cut(s) 381
HapII CCGG 2 cut(s) 258, 377
HgaI GACGC 1 cut(s) 119
Hin1II CATG 2 cut(s) 35, 443
HincII GTYRAC 3 cut(s) 37, 403, 548
HindII GTYRAC 3 cut(s) 37, 403, 548
HinfI GANTC 4 cut(s) 152, 171, 240, 249
HpaII CCGG 2 cut(s) 258, 377
Hpy166II GTNNAC 3 cut(s) 37, 403, 548
Hpy188I TCNGA 8 cut(s) 66, 148, 157, 197, 228, 239, 512, 593
Hpy188III TCNNGA 4 cut(s) 109, 134, 168, 440
Hpy8I GTNNAC 3 cut(s) 37, 403, 548
HpyAV CCTTC 4 cut(s) 74, 112, 229, 536
HpyCH4III ACNGT 3 cut(s) 41, 163, 491
HpyCH4V TGCA 2 cut(s) 329, 335
HpyF10VI GCNNNNNNNGC 3 cut(s) 136, 182, 326
HpyF3I CTNAG 3 cut(s) 53, 227, 364
Hsp92II CATG 2 cut(s) 35, 443
Kzo9I GATC 1 cut(s) 66
LmnI GCTCC 1 cut(s) 136
LpnPI CCDG 7 cut(s) 119, 195, 217, 271, 390, 465, 558
LweI GCATC 1 cut(s) 205
MaeI CTAG 2 cut(s) 18, 449
MaeIII GTNAC 2 cut(s) 485, 502
MalI GATC 1 cut(s) 68
MboI GATC 1 cut(s) 66
MboII GAAGA 1 cut(s) 136
MfeI CAATTG 1 cut(s) 330
MluCI AATT 3 cut(s) 10, 313, 330
MlyI GAGTC 4 cut(s) 161, 180, 249, 258
MnlI CCTC 7 cut(s) 97, 224, 297, 350, 392, 456, 476
MseI TTAA 1 cut(s) 9
MspI CCGG 2 cut(s) 258, 377
MspR9I CCNGG 2 cut(s) 258, 378
MunI CAATTG 1 cut(s) 330
MvnI CGCG 1 cut(s) 169
MwoI GCNNNNNNNGC 3 cut(s) 136, 182, 326
NciI CCSGG 2 cut(s) 258, 378
NdeII GATC 1 cut(s) 66
NlaIII CATG 2 cut(s) 35, 443
NlaIV GGNNCC 3 cut(s) 285, 361, 577
NruI TCGCGA 1 cut(s) 169
NspI RCATGY 1 cut(s) 35
PagI TCATGA 1 cut(s) 439
PciI ACATGT 1 cut(s) 31
PcsI WCGNNNNNNNCGW 2 cut(s) 249, 408
PleI GAGTC 4 cut(s) 160, 179, 248, 257
PpsI GAGTC 4 cut(s) 160, 179, 248, 257
PpuMI RGGWCCY 1 cut(s) 283
PscI ACATGT 1 cut(s) 31
Psp5II RGGWCCY 1 cut(s) 283
PspFI CCCAGC 1 cut(s) 181
PspN4I GGNNCC 3 cut(s) 285, 361, 577
PspPI GGNCC 3 cut(s) 283, 379, 575
PspPPI RGGWCCY 1 cut(s) 283
RruI TCGCGA 1 cut(s) 169
SalI GTCGAC 2 cut(s) 401, 546
SaqAI TTAA 1 cut(s) 9
Sau3AI GATC 1 cut(s) 66
Sau96I GGNCC 3 cut(s) 283, 379, 575
SchI GAGTC 4 cut(s) 161, 180, 249, 258
ScrFI CCNGG 2 cut(s) 258, 378
SfaNI GCATC 1 cut(s) 205
SinI GGWCC 2 cut(s) 283, 575
SpeI ACTAGT 1 cut(s) 17
Sse9I AATT 3 cut(s) 10, 313, 330
SsiI CCGC 1 cut(s) 292
SspMI CTAG 2 cut(s) 18, 449
StyD4I CCNGG 2 cut(s) 256, 376
StyI CCWWGG 1 cut(s) 432
TaaI ACNGT 3 cut(s) 41, 163, 491
TaqI TCGA 6 cut(s) 243, 252, 300, 402, 461, 547
TasI AATT 3 cut(s) 10, 313, 330
Tru1I TTAA 1 cut(s) 9
Tru9I TTAA 1 cut(s) 9
TscAI CASTG 1 cut(s) 57
TspDTI ATGAA 4 cut(s) 93, 404, 428, 543
TspGWI ACGGA 1 cut(s) 400
TspRI CASTG 1 cut(s) 57
VpaK11BI GGWCC 2 cut(s) 283, 575
XapI RAATTY 1 cut(s) 313
XceI RCATGY 1 cut(s) 35
XmiI GTMKAC 2 cut(s) 402, 547
XspI CTAG 2 cut(s) 18, 449
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.