Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000364

Physical Location & Seq

Genomic Coordinates Reverse (-)

13377685 .. 13378504

Gene Structure 820 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G26485.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGAGATTTCAGAAAAATGGATAAGACACTATAGTAGCACACACAAAATCCTTCTAGTTGGAGAAGGAAACTTCTCATTCTCACTATGTCTAGCTTCAGCTTTTGGCTCGGCCATGAACATAACTGCGACCTCTCTCGATTCTGAAGATGAACTGAGCATAAAATATATGGATGCGGTGGATAACATAAACATATTGAAGAGATACGGGTGTGATATTCAGCACGAGGTTGACGTGCACACAATGAGCTTCGATAATAGTTTGAGTCTGCAACGTTATGACCGCATTGTCTTCAATTTTCCTCACGCAGGGTCTCGTTTCTTTGGTCGTGAATTGTCCTCTAGGGCCATCGAGAGCCACAAAGAGTTAGTGAGAGGATTTCTTGAGAACGCTAAGGAGATGTTGGAAGAGGACGGAGAGATCCATATTACACACAAGACAACGTATCCATTTAGCGATTGGGGGATAAAGAAGCTGGGTAAAGGAGAAGGTTTGAAGCTGCTTAAGAAATCGAAGTTCGAGCTGAGTCATTATCCGGGTTATATCACCAAGAGAGGGAGTGGTGGACGTAGGAGTGATGATTATTTCCCTGTTGGTGAATGTTCTACTTACATGTTTACCCAATCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008649 GO:0008757 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016436 GO:0016740 GO:0016741 GO:0022613 GO:0031167 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0070042 GO:0070475 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:0140102 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2431

Protein Analysis

209

Amino Acids

23.85

Weight (kDa)

6.31

Isoelectric Point (pI)

58.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BMT5-like	PF10354	18 - 185	3.4e-53	rRNA (uridine-N3-)-methyltransferase BTM5-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26485
fragaria_vesca	FvH4_3g14860 FvH4_3g14860 FvH4_3g14861 FvH4_3g14862 FvH4_3g14862 FvH4_3g14880 FvH4_3g14880 FvH4_3g14890 FvH4_3g14891 FvH4_3g14892 FvH4_3g14901 FvH4_3g14902
malus_domestica	MD05G1233500.v1.1 MD05G1233600.v1.1 MD10G1209900.v1.1 MD10G1210000.v1.1 MD10G1210100.v1.1 MD10G1210300.v1.1 MD10G1210400.v1.1
prunus_persica	Prupe.4G132900_v2.0.a1 Prupe.4G133200_v2.0.a1 Prupe.4G133200_v2.0.a1 Prupe.4G133200_v2.0.a1 Prupe.4G133300_v2.0.a1 Prupe.4G133300_v2.0.a1 Prupe.4G133400_v2.0.a1 Prupe.4G133500_v2.0.a1 Prupe.4G133500_v2.0.a1 Prupe.4G133600_v2.0.a1 Prupe.4G133600_v2.0.a1
pyrus_communis	pycom05g21110 pycom05g21120 pycom10g17840
rosa_chinensis	RchiOBHm_Chr5g0024361 RchiOBHm_Chr5g0024391 RchiOBHm_Chr5g0024411 RchiOBHm_Chr5g0024431 RchiOBHm_Chr5g0024451 RchiOBHm_Chr5g0024461 RchiOBHm_Chr5g0024471 RchiOBHm_Chr5g0024481 RchiOBHm_Chr5g0024501 RchiOBHm_Chr5g0024511
rosa_laevigata	RLG00000032799 RLG00000032800 RLG00000032801 RLG00000032802 RLG00000032803
rosa_multiflora	Rmu_sc0000761.1_g000010 Rmu_sc0000761.1_g000014 Rmu_sc0000761.1_g000018 Rmu_sc0000761.1_g000025 Rmu_sc0005861.1_g000002 Rmu_sc0005861.1_g000004 Rmu_sc0005861.1_g000007 Rmu_sc0011809.1_g000001 Rmu_sc0011809.1_g000006
rosa_roxburghii	Rroxscaffold_1G00054740 Rroxscaffold_1G00054750 Rroxscaffold_1G00054760 Rroxscaffold_1G00054770 Rroxscaffold_1G00054780 Rroxscaffold_1G00054790 Rroxscaffold_1G00054840 Rroxscaffold_1G00055860 Rroxscaffold_3G00237770 Rroxscaffold_6G00389330
rosa_rugosa	Rorug05G0083300 Rorug05G0083400 Rorug05G0083400
rosa_samantha	Rh5AG174100 Rh5AG174300 Rh5AG174600 Rh5AG174700 Rh5AG175000 Rh5AG175300 Rh5BG171000 Rh5BG171400 Rh5BG171500 Rh5BG171600 Rh5BG171700 Rh5BG172100 Rh5BG172300 Rh5BG172500 Rh5CG187400 Rh5CG187700 Rh5CG187900 Rh5CG188000 Rh5CG188200 Rh5CG188400 Rh5CG188500 Rh5CG188600 Rh5DG173200 Rh5DG173400 Rh5DG173500 Rh5DG173700 Rh5DG173900 Rh5DG174000 Rh5DG174100
rosa_wichuraiana	Rw5G015700 Rw5G015730 Rw5G015740 Rw5G015770 Rw5G015790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	287
AciI	CCGC	2 cut(s)	176, 283
AclI	AACGTT	1 cut(s)	274
AclWI	GGATC	1 cut(s)	415
AcoI	YGGCCR	1 cut(s)	111
AcuI	CTGAAG	2 cut(s)	81, 165
AfiI	CCNNNNNNNGG	2 cut(s)	308, 555
AflII	CTTAAG	1 cut(s)	503
AflIII	ACRYGT	1 cut(s)	612
AgsI	TTSAA	3 cut(s)	199, 295, 496
AjiI	CACGTC	1 cut(s)	235
AluBI	AGCT	6 cut(s)	95, 101, 249, 475, 499, 523
AluI	AGCT	6 cut(s)	95, 101, 249, 475, 499, 523
Alw21I	GWGCWC	1 cut(s)	240
Alw26I	GTCTC	1 cut(s)	318
Alw44I	GTGCAC	1 cut(s)	236
AlwI	GGATC	1 cut(s)	415
AoxI	GGCC	2 cut(s)	111, 345
ApaLI	GTGCAC	1 cut(s)	236
ApeKI	GCWGC	1 cut(s)	499
AspS9I	GGNCC	1 cut(s)	345
AsuC2I	CCSGG	1 cut(s)	537
AsuHPI	GGTGA	2 cut(s)	538, 608
BaeGI	GKGCMC	1 cut(s)	240
BaeI	ACNNNNGTAYC	2 cut(s)	196, 229
BauI	CACGAG	1 cut(s)	224
BbsI	GAAGAC	1 cut(s)	283
Bbv12I	GWGCWC	1 cut(s)	240
BbvI	GCAGC	1 cut(s)	486
BccI	CCATC	1 cut(s)	356
BciVI	GTATCC	1 cut(s)	456
BcnI	CCSGG	1 cut(s)	537
BcoDI	GTCTC	1 cut(s)	318
BfaI	CTAG	3 cut(s)	56, 92, 342
BfmI	CTRYAG	1 cut(s)	31
BfrI	CTTAAG	1 cut(s)	503
BfuI	GTATCC	1 cut(s)	456
BisI	GCNGC	1 cut(s)	500
BlsI	GCNGC	1 cut(s)	501
Bme1390I	CCNGG	1 cut(s)	537
BmgBI	CACGTC	1 cut(s)	235
BmgT120I	GGNCC	1 cut(s)	345
BmrFI	CCNGG	1 cut(s)	537
BmsI	GCATC	1 cut(s)	163
BpiI	GAAGAC	1 cut(s)	283
Bpu10I	CCTNAGC	1 cut(s)	393
BpuEI	CTTGAG	1 cut(s)	404
BpuMI	CCSGG	1 cut(s)	537
BsaI	GGTCTC	1 cut(s)	318
Bsc4I	CCNNNNNNNGG	2 cut(s)	308, 555
BseGI	GGATG	1 cut(s)	178
BseLI	CCNNNNNNNGG	2 cut(s)	308, 555
BseMII	CTCAG	2 cut(s)	146, 515
BseSI	GKGCMC	1 cut(s)	240
BseXI	GCAGC	1 cut(s)	486
BseYI	CCCAGC	1 cut(s)	475
BshFI	GGCC	2 cut(s)	113, 347
BsiHKAI	GWGCWC	1 cut(s)	240
BsiSI	CCGG	1 cut(s)	536
BslI	CCNNNNNNNGG	2 cut(s)	308, 555
BsmAI	GTCTC	1 cut(s)	318
BsnI	GGCC	2 cut(s)	113, 347
Bso31I	GGTCTC	1 cut(s)	318
Bsp1286I	GDGCHC	1 cut(s)	240
Bsp143I	GATC	1 cut(s)	420
BspACI	CCGC	2 cut(s)	176, 283
BspANI	GGCC	2 cut(s)	113, 347
BspCNI	CTCAG	2 cut(s)	147, 516
BspPI	GGATC	1 cut(s)	415
BspTI	CTTAAG	1 cut(s)	503
BspTNI	GGTCTC	1 cut(s)	318
BssMI	GATC	1 cut(s)	420
BssSI	CACGAG	1 cut(s)	224
Bst2BI	CACGAG	1 cut(s)	224
Bst6I	CTCTTC	2 cut(s)	194, 402
BstAFI	CTTAAG	1 cut(s)	503
BstDEI	CTNAG	3 cut(s)	155, 393, 524
BstENI	CCTNNNNNAGG	1 cut(s)	306
BstF5I	GGATG	1 cut(s)	178
BstKTI	GATC	1 cut(s)	423
BstMAI	GTCTC	1 cut(s)	318
BstMBI	GATC	1 cut(s)	420
BstNSI	RCATGY	1 cut(s)	616
BstSCI	CCNGG	1 cut(s)	535
BstSFI	CTRYAG	1 cut(s)	31
BstSLI	GKGCMC	1 cut(s)	240
BstV1I	GCAGC	1 cut(s)	486
BstV2I	GAAGAC	1 cut(s)	283
BstX2I	RGATCY	1 cut(s)	420
BstYI	RGATCY	1 cut(s)	420
BsuI	GTATCC	1 cut(s)	456
BsuRI	GGCC	2 cut(s)	113, 347
BtrI	CACGTC	1 cut(s)	235
BtsCI	GGATG	1 cut(s)	178
Cfr13I	GGNCC	1 cut(s)	345
CviAII	CATG	2 cut(s)	115, 613
DdeI	CTNAG	3 cut(s)	155, 393, 524
DpnI	GATC	1 cut(s)	422
DpnII	GATC	1 cut(s)	420
DrdI	GACNNNNNNGTC	1 cut(s)	287
DseDI	GACNNNNNNGTC	1 cut(s)	287
EaeI	YGGCCR	1 cut(s)	111
Eam1104I	CTCTTC	2 cut(s)	194, 402
EarI	CTCTTC	2 cut(s)	194, 402
Eco31I	GGTCTC	1 cut(s)	318
Eco57I	CTGAAG	2 cut(s)	81, 165
EcoNI	CCTNNNNNAGG	1 cut(s)	306
FaeI	CATG	2 cut(s)	118, 616
FatI	CATG	2 cut(s)	114, 612
Fnu4HI	GCNGC	1 cut(s)	500
FokI	GGATG	1 cut(s)	185
Fsp4HI	GCNGC	1 cut(s)	500
FspBI	CTAG	3 cut(s)	56, 92, 342
GluI	GCNGC	1 cut(s)	500
GsaI	CCCAGC	1 cut(s)	479
HaeIII	GGCC	2 cut(s)	113, 347
HapII	CCGG	1 cut(s)	536
Hin1II	CATG	2 cut(s)	118, 616
HincII	GTYRAC	1 cut(s)	232
HindII	GTYRAC	1 cut(s)	232
HinfI	GANTC	3 cut(s)	140, 265, 526
HpaII	CCGG	1 cut(s)	536
HphI	GGTGA	2 cut(s)	538, 608
Hpy166II	GTNNAC	4 cut(s)	232, 238, 566, 618
Hpy188I	TCNGA	2 cut(s)	13, 145
Hpy188III	TCNNGA	4 cut(s)	137, 329, 352, 383
Hpy8I	GTNNAC	4 cut(s)	232, 238, 566, 618
HpyAV	CCTTC	3 cut(s)	59, 62, 482
HpyCH4IV	ACGT	4 cut(s)	234, 274, 443, 568
HpyCH4V	TGCA	2 cut(s)	238, 271
HpyF3I	CTNAG	3 cut(s)	155, 393, 524
HpySE526I	ACGT	4 cut(s)	234, 274, 443, 568
Hsp92II	CATG	2 cut(s)	118, 616
Kzo9I	GATC	1 cut(s)	420
LpnPI	CCDG	4 cut(s)	294, 461, 549, 603
Lsp1109I	GCAGC	1 cut(s)	486
LweI	GCATC	1 cut(s)	163
MaeI	CTAG	3 cut(s)	56, 92, 342
MaeII	ACGT	4 cut(s)	234, 274, 443, 568
MalI	GATC	1 cut(s)	422
MboI	GATC	1 cut(s)	420
MboII	GAAGA	4 cut(s)	158, 211, 283, 419
MflI	RGATCY	1 cut(s)	420
MhlI	GDGCHC	1 cut(s)	240
MluCI	AATT	2 cut(s)	295, 332
MlyI	GAGTC	2 cut(s)	274, 535
MmeI	TCCRAC	2 cut(s)	40, 384
MnlI	CCTC	7 cut(s)	142, 220, 312, 349, 368, 403, 548
MseI	TTAA	1 cut(s)	504
MspCI	CTTAAG	1 cut(s)	503
MspI	CCGG	1 cut(s)	536
MspR9I	CCNGG	1 cut(s)	537
NciI	CCSGG	1 cut(s)	537
NdeII	GATC	1 cut(s)	420
NlaIII	CATG	2 cut(s)	118, 616
NmeAIII	GCCGAG	1 cut(s)	89
NspI	RCATGY	1 cut(s)	616
PciI	ACATGT	1 cut(s)	612
PcsI	WCGNNNNNNNCGW	1 cut(s)	231
PfeI	GAWTC	1 cut(s)	140
PkrI	GCNGC	1 cut(s)	501
PleI	GAGTC	2 cut(s)	273, 534
PpsI	GAGTC	2 cut(s)	273, 534
PscI	ACATGT	1 cut(s)	612
Psp1406I	AACGTT	1 cut(s)	274
PspFI	CCCAGC	1 cut(s)	475
PspPI	GGNCC	1 cut(s)	345
PsuI	RGATCY	1 cut(s)	420
SaqAI	TTAA	1 cut(s)	504
SatI	GCNGC	1 cut(s)	500
Sau3AI	GATC	1 cut(s)	420
Sau96I	GGNCC	1 cut(s)	345
SchI	GAGTC	2 cut(s)	274, 535
ScrFI	CCNGG	1 cut(s)	537
SduI	GDGCHC	1 cut(s)	240
SfaNI	GCATC	1 cut(s)	163
SfcI	CTRYAG	1 cut(s)	31
SmlI	CTYRAG	2 cut(s)	383, 503
SmoI	CTYRAG	2 cut(s)	383, 503
Sse9I	AATT	2 cut(s)	295, 332
SsiI	CCGC	2 cut(s)	176, 283
SspMI	CTAG	3 cut(s)	56, 92, 342
StyD4I	CCNGG	1 cut(s)	535
TaiI	ACGT	4 cut(s)	237, 277, 446, 571
TaqI	TCGA	5 cut(s)	138, 252, 351, 512, 519
TasI	AATT	2 cut(s)	295, 332
TfiI	GAWTC	1 cut(s)	140
Tru1I	TTAA	1 cut(s)	504
Tru9I	TTAA	1 cut(s)	504
TseI	GCWGC	1 cut(s)	499
TspDTI	ATGAA	2 cut(s)	131, 165
TspGWI	ACGGA	1 cut(s)	429
Vha464I	CTTAAG	1 cut(s)	503
VneI	GTGCAC	1 cut(s)	236
XagI	CCTNNNNNAGG	1 cut(s)	306
XceI	RCATGY	1 cut(s)	616
XcmI	CCANNNNNNNNNTGG	1 cut(s)	456
XspI	CTAG	3 cut(s)	56, 92, 342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.