Rh5CG187900

Belongs to the 14-3-3 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000364
Physical Location & Seq
Forward (+)
18731364 .. 18739301
7938 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG187900.1

Sequence Viewer

Length: 780 bp
ATGCTGGCCGGTTACGTGAAAGGCCGCCGTCGTTCATCAGAAAAGAATAAGTCCCAAATTTTGTTGCATCAGAGTTTGGTGAGGGGATACTTCATGAACTCAAGGGAGATGCTGACTAAAAATGGAGAAATTCATGTCACACACAAGACATCATATCCTTTTAGTGAGTGGGAAATAGTGGAGTTAGCAGAGGAGGCTGAGTTATTCTTGGTTAAAGAAGAAGAGTTTTACAAACTGGATTATCCGGGATATGAAAACAAGAGAGGAGATGGGATTTGCGACGAGTCATTCCCTGTTGGGAAGTCGGGCACCTTCATCTTGCCAAGCGGTTGTACCCTAATACGAGGTTCCACCGAGAGAAGCTACCTCTCTTTTGGGTACAAGAATGTTGTTGATGCTCGGAGATCATCATGGAGGATCTTATCATCAGCAGAGCTGACGGAGGAGGCGAAAGGAAATAATATTCACCTGAAGCATCTAAAAACATATAGACAGAGAGTTGAATCAGAGATATCAATTATTTGTAGAGATATCATCTCAGTGCTTGATAGTCATCTCATCCCTTCGACTTCAGATGGTGAATCAACTGTGCATTATCATAAGATGAAAGGAGACTTTTATAGGTATCTCGCAGAAATCAAGGCCGGTGATGAGAAAGAGGAGGCTATCGAACAGTCGAAGAAAGCATATTACAAGGCCCTCACTGTTGCAGAAGTTAAGTTGCCTCCTACAAATCCCATCCGTAGCACATGGACTCGGTACGGATATATATTATACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04011 ko04110 ko04114 ko04151 ko04390 ko04391 ko04722 ko05169 ko05203 map04011 map04110 map04114 map04151 map04390 map04391 map04722 map05169 map05203
Pfam Domains
Protein Families
14-3-3

Protein Analysis

259

Amino Acids

29.85

Weight (kDa)

8.24

Isoelectric Point (pI)

61.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BMT5-like PF10354 13 - 88 5e-18 rRNA (uridine-N3-)-methyltransferase BTM5-like
14-3-3 PF00244 118 - 248 2.1e-45 14-3-3 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000364)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26485
fragaria_vesca FvH4_3g14860 FvH4_3g14860 FvH4_3g14861 FvH4_3g14862 FvH4_3g14862 FvH4_3g14880 FvH4_3g14880 FvH4_3g14890 FvH4_3g14891 FvH4_3g14892 FvH4_3g14901 FvH4_3g14902
malus_domestica MD05G1233500.v1.1 MD05G1233600.v1.1 MD10G1209900.v1.1 MD10G1210000.v1.1 MD10G1210100.v1.1 MD10G1210300.v1.1 MD10G1210400.v1.1
prunus_persica Prupe.4G132900_v2.0.a1 Prupe.4G133200_v2.0.a1 Prupe.4G133200_v2.0.a1 Prupe.4G133200_v2.0.a1 Prupe.4G133300_v2.0.a1 Prupe.4G133300_v2.0.a1 Prupe.4G133400_v2.0.a1 Prupe.4G133500_v2.0.a1 Prupe.4G133500_v2.0.a1 Prupe.4G133600_v2.0.a1 Prupe.4G133600_v2.0.a1
pyrus_communis pycom05g21110 pycom05g21120 pycom10g17840
rosa_chinensis RchiOBHm_Chr5g0024361 RchiOBHm_Chr5g0024391 RchiOBHm_Chr5g0024411 RchiOBHm_Chr5g0024431 RchiOBHm_Chr5g0024451 RchiOBHm_Chr5g0024461 RchiOBHm_Chr5g0024471 RchiOBHm_Chr5g0024481 RchiOBHm_Chr5g0024501 RchiOBHm_Chr5g0024511
rosa_laevigata RLG00000032799 RLG00000032800 RLG00000032801 RLG00000032802 RLG00000032803
rosa_multiflora Rmu_sc0000761.1_g000010 Rmu_sc0000761.1_g000014 Rmu_sc0000761.1_g000018 Rmu_sc0000761.1_g000025 Rmu_sc0005861.1_g000002 Rmu_sc0005861.1_g000004 Rmu_sc0005861.1_g000007 Rmu_sc0011809.1_g000001 Rmu_sc0011809.1_g000006
rosa_roxburghii Rroxscaffold_1G00054740 Rroxscaffold_1G00054750 Rroxscaffold_1G00054760 Rroxscaffold_1G00054770 Rroxscaffold_1G00054780 Rroxscaffold_1G00054790 Rroxscaffold_1G00054840 Rroxscaffold_1G00055860 Rroxscaffold_3G00237770 Rroxscaffold_6G00389330
rosa_rugosa Rorug05G0083300 Rorug05G0083400 Rorug05G0083400
rosa_samantha Rh5AG174100 Rh5AG174300 Rh5AG174600 Rh5AG174700 Rh5AG175000 Rh5AG175300 Rh5BG171000 Rh5BG171400 Rh5BG171500 Rh5BG171600 Rh5BG171700 Rh5BG172100 Rh5BG172300 Rh5BG172500 Rh5CG187400 Rh5CG187700 Rh5CG187900 Rh5CG188000 Rh5CG188200 Rh5CG188400 Rh5CG188500 Rh5CG188600 Rh5DG173200 Rh5DG173400 Rh5DG173500 Rh5DG173700 Rh5DG173900 Rh5DG174000 Rh5DG174100
rosa_wichuraiana Rw5G015700 Rw5G015730 Rw5G015740 Rw5G015770 Rw5G015790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 308
AciI CCGC 2 cut(s) 25, 327
AclWI GGATC 1 cut(s) 425
AcoI YGGCCR 1 cut(s) 6
AcsI RAATTY 2 cut(s) 57, 129
AcuI CTGAAG 2 cut(s) 491, 555
AfaI GTAC 3 cut(s) 334, 380, 761
AgsI TTSAA 1 cut(s) 503
AluBI AGCT 2 cut(s) 363, 436
AluI AGCT 2 cut(s) 363, 436
Alw26I GTCTC 1 cut(s) 606
AlwI GGATC 1 cut(s) 425
AoxI GGCC 4 cut(s) 6, 22, 642, 696
ApoI RAATTY 2 cut(s) 57, 129
AspS9I GGNCC 1 cut(s) 697
AsuC2I CCSGG 1 cut(s) 246
AsuHPI GGTGA 4 cut(s) 91, 458, 590, 659
BaeGI GKGCMC 1 cut(s) 311
BanI GGYRCC 1 cut(s) 308
BccI CCATC 3 cut(s) 263, 569, 746
BceAI ACGGC 1 cut(s) 12
BciVI GTATCC 1 cut(s) 80
BcnI CCSGG 1 cut(s) 246
BcoDI GTCTC 1 cut(s) 606
BfuI GTATCC 1 cut(s) 80
BisI GCNGC 1 cut(s) 25
BlsI GCNGC 1 cut(s) 26
Bme1390I CCNGG 1 cut(s) 246
BmgT120I GGNCC 1 cut(s) 697
BmiI GGNNCC 2 cut(s) 310, 349
BmrFI CCNGG 1 cut(s) 246
BmsI GCATC 4 cut(s) 76, 99, 385, 484
BpuEI CTTGAG 1 cut(s) 85
BpuMI CCSGG 1 cut(s) 246
BsaAI YACGTR 1 cut(s) 16
BsaBI GATNNNNATC 1 cut(s) 552
BsaXI ACNNNNNCTCC 2 cut(s) 185, 215
Bse118I RCCGGY 2 cut(s) 8, 644
Bse1I ACTGG 1 cut(s) 240
Bse8I GATNNNNATC 1 cut(s) 552
BseGI GGATG 2 cut(s) 558, 738
BseJI GATNNNNATC 1 cut(s) 552
BseMII CTCAG 2 cut(s) 189, 552
BseNI ACTGG 1 cut(s) 240
BseRI GAGGAG 4 cut(s) 206, 279, 458, 674
BseSI GKGCMC 1 cut(s) 311
BshFI GGCC 4 cut(s) 8, 24, 644, 698
BshNI GGYRCC 1 cut(s) 308
BsiSI CCGG 3 cut(s) 9, 245, 645
BslFI GGGAC 1 cut(s) 37
BsmAI GTCTC 1 cut(s) 606
BsmFI GGGAC 1 cut(s) 37
BsnI GGCC 4 cut(s) 8, 24, 644, 698
Bsp1286I GDGCHC 1 cut(s) 311
Bsp143I GATC 2 cut(s) 404, 417
BspACI CCGC 2 cut(s) 25, 327
BspANI GGCC 4 cut(s) 8, 24, 644, 698
BspCNI CTCAG 2 cut(s) 190, 551
BspHI TCATGA 1 cut(s) 93
BspLI GGNNCC 2 cut(s) 310, 349
BspPI GGATC 1 cut(s) 425
BspT107I GGYRCC 1 cut(s) 308
BsrFI RCCGGY 2 cut(s) 8, 644
BsrI ACTGG 1 cut(s) 240
BssAI RCCGGY 2 cut(s) 8, 644
BssMI GATC 2 cut(s) 404, 417
Bst4CI ACNGT 3 cut(s) 589, 675, 706
Bst6I CTCTTC 1 cut(s) 216
BstBAI YACGTR 1 cut(s) 16
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 2 cut(s) 198, 538
BstF5I GGATG 2 cut(s) 558, 738
BstKTI GATC 2 cut(s) 407, 420
BstMAI GTCTC 1 cut(s) 606
BstMBI GATC 2 cut(s) 404, 417
BstMWI GCNNNNNNNGC 1 cut(s) 194
BstSCI CCNGG 1 cut(s) 244
BstSLI GKGCMC 1 cut(s) 311
BstX2I RGATCY 1 cut(s) 417
BstYI RGATCY 1 cut(s) 417
BsuI GTATCC 1 cut(s) 80
BsuRI GGCC 4 cut(s) 8, 24, 644, 698
BtsCI GGATG 2 cut(s) 558, 738
BtsIMutI CAGTG 2 cut(s) 546, 702
Cac8I GCNNGC 1 cut(s) 6
CciI TCATGA 1 cut(s) 93
Cfr10I RCCGGY 2 cut(s) 8, 644
Cfr13I GGNCC 1 cut(s) 697
Csp6I GTAC 3 cut(s) 333, 379, 760
CviAII CATG 4 cut(s) 94, 134, 411, 750
CviJI RGCY 8 cut(s) 8, 24, 197, 363, 436, 644, 665, 698
CviKI_1 RGCY 8 cut(s) 8, 24, 197, 363, 436, 644, 665, 698
CviQI GTAC 3 cut(s) 333, 379, 760
DdeI CTNAG 2 cut(s) 198, 538
DpnI GATC 2 cut(s) 406, 419
DpnII GATC 2 cut(s) 404, 417
EaeI YGGCCR 1 cut(s) 6
Eam1104I CTCTTC 1 cut(s) 216
EarI CTCTTC 1 cut(s) 216
Eco32I GATATC 2 cut(s) 513, 532
Eco57I CTGAAG 2 cut(s) 491, 555
EcoO109I RGGNCCY 1 cut(s) 697
EcoRV GATATC 2 cut(s) 513, 532
FaeI CATG 4 cut(s) 97, 137, 414, 753
FaqI GGGAC 1 cut(s) 37
FatI CATG 4 cut(s) 93, 133, 410, 749
Fnu4HI GCNGC 1 cut(s) 25
FokI GGATG 2 cut(s) 545, 725
Fsp4HI GCNGC 1 cut(s) 25
GluI GCNGC 1 cut(s) 25
HaeIII GGCC 4 cut(s) 8, 24, 644, 698
HapII CCGG 3 cut(s) 9, 245, 645
Hin1II CATG 4 cut(s) 97, 137, 414, 753
HinfI GANTC 4 cut(s) 284, 503, 581, 754
HpaII CCGG 3 cut(s) 9, 245, 645
HphI GGTGA 4 cut(s) 91, 458, 590, 659
Hpy188I TCNGA 5 cut(s) 40, 72, 402, 508, 574
Hpy188III TCNNGA 1 cut(s) 94
Hpy99I CGWCG 2 cut(s) 33, 284
HpyAV CCTTC 2 cut(s) 322, 573
HpyCH4III ACNGT 3 cut(s) 589, 675, 706
HpyCH4IV ACGT 1 cut(s) 15
HpyCH4V TGCA 3 cut(s) 67, 592, 710
HpyF10VI GCNNNNNNNGC 1 cut(s) 194
HpyF3I CTNAG 2 cut(s) 198, 538
HpySE526I ACGT 1 cut(s) 15
Hsp92II CATG 4 cut(s) 97, 137, 414, 753
Kzo9I GATC 2 cut(s) 404, 417
LpnPI CCDG 6 cut(s) 22, 221, 258, 306, 482, 658
LweI GCATC 4 cut(s) 76, 99, 385, 484
MaeII ACGT 1 cut(s) 15
MaeIII GTNAC 2 cut(s) 11, 136
MalI GATC 2 cut(s) 406, 419
MboI GATC 2 cut(s) 404, 417
MboII GAAGA 3 cut(s) 230, 233, 691
MflI RGATCY 1 cut(s) 417
MhlI GDGCHC 1 cut(s) 311
MluCI AATT 3 cut(s) 57, 129, 516
MlyI GAGTC 2 cut(s) 293, 748
MseI TTAA 2 cut(s) 213, 717
MslI CAYNNNNRTG 1 cut(s) 539
MspI CCGG 3 cut(s) 9, 245, 645
MspR9I CCNGG 1 cut(s) 246
MwoI GCNNNNNNNGC 1 cut(s) 194
NciI CCSGG 1 cut(s) 246
NdeII GATC 2 cut(s) 404, 417
NlaIII CATG 4 cut(s) 97, 137, 414, 753
NlaIV GGNNCC 2 cut(s) 310, 349
NmuCI GTSAC 1 cut(s) 136
PagI TCATGA 1 cut(s) 93
PcsI WCGNNNNNNNCGW 1 cut(s) 446
PfeI GAWTC 2 cut(s) 503, 581
PfoI TCCNGGA 1 cut(s) 244
PkrI GCNGC 1 cut(s) 26
PleI GAGTC 2 cut(s) 292, 748
PpsI GAGTC 2 cut(s) 292, 748
Ppu21I YACGTR 1 cut(s) 16
PspN4I GGNNCC 2 cut(s) 310, 349
PspPI GGNCC 1 cut(s) 697
PsuI RGATCY 1 cut(s) 417
RsaI GTAC 3 cut(s) 334, 380, 761
RsaNI GTAC 3 cut(s) 333, 379, 760
RseI CAYNNNNRTG 1 cut(s) 539
SaqAI TTAA 2 cut(s) 213, 717
SatI GCNGC 1 cut(s) 25
Sau3AI GATC 2 cut(s) 404, 417
Sau96I GGNCC 1 cut(s) 697
SchI GAGTC 2 cut(s) 293, 748
ScrFI CCNGG 1 cut(s) 246
SduI GDGCHC 1 cut(s) 311
SetI ASST 8 cut(s) 18, 314, 349, 365, 369, 438, 471, 626
SfaNI GCATC 4 cut(s) 76, 99, 385, 484
SmiMI CAYNNNNRTG 1 cut(s) 539
SmlI CTYRAG 1 cut(s) 100
SmoI CTYRAG 1 cut(s) 100
Sse9I AATT 3 cut(s) 57, 129, 516
SsiI CCGC 2 cut(s) 25, 327
SspI AATATT 1 cut(s) 463
StyD4I CCNGG 1 cut(s) 244
TaaI ACNGT 3 cut(s) 589, 675, 706
TaiI ACGT 1 cut(s) 18
TaqI TCGA 3 cut(s) 566, 669, 677
TasI AATT 3 cut(s) 57, 129, 516
TauI GCSGC 1 cut(s) 27
TfiI GAWTC 2 cut(s) 503, 581
Tru1I TTAA 2 cut(s) 213, 717
Tru9I TTAA 2 cut(s) 213, 717
TscAI CASTG 2 cut(s) 546, 709
TseFI GTSAC 1 cut(s) 136
Tsp45I GTSAC 1 cut(s) 136
TspDTI ATGAA 7 cut(s) 24, 82, 110, 122, 267, 304, 620
TspGWI ACGGA 3 cut(s) 455, 731, 777
TspRI CASTG 2 cut(s) 546, 709
XapI RAATTY 2 cut(s) 57, 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.