FvH4_3g14880

At4g26485-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000364
Physical Location & Seq
Forward (+)
9205573 .. 9207879
2307 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g14880.t1

Sequence Viewer

Length: 687 bp
ATGGAAGTCTTTGGGTATGAGAAGCGTATCAAGCACTATACCAGCTCTCAGAAAATACTCTTGGTCGGAGAAGGAGACTTCTCCTTTGCCGTTTCCTTAGCCAGAGCTTTCGGGTCTTCCATTAACATGGTCGCCACTTCTCTCGACAGCAGAGAGGCATTGAGGGTGAAGTATTTAAGGGCTATAAGCAATGTAATGGAATTGGAGAAGAGAGGATGCGTAGTACTGCATGTGGATGTGCATAAAATGAGCCAACACCCTTTTCTGAGTTATATTCGGTTTGATCGAATAGTCTACAATTTCCCTCATGCCGGTTACTTGCATGGTCAATCATCATCCGAGCATAACCAGTTTCAAATTTGGTTCCATCAGGATTTGATGAAGGGATTCTTCACAAATGCGCGTGAAATGCTTACTGAAATGGGAGAAATTCATGTCACACACAAGACAGCATATCCTTTCTGTGAATGGGAAATAGTGAAGTTAGCACGACAGGTTGGGTTGTATTTGCTACAGGAAGAAAAGTTCTCAAGATGGGATTATCCGGGTTATGAAAATAAGAGAGGAGCTGGGTTATGCGATCAAACTTTTCCTGTTGGAGAATGTAGCACCTTCAAATTTTCCAAGCTGTTGTACCATTCTACCCCATACAGTTACCACATTGACTTGATAAGGGCTTACGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2431

Protein Analysis

229

Amino Acids

26.56

Weight (kDa)

8.27

Isoelectric Point (pI)

44.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BMT5-like PF10354 20 - 188 4.3e-51 rRNA (uridine-N3-)-methyltransferase BTM5-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000364)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26485
fragaria_vesca FvH4_3g14860 FvH4_3g14860 FvH4_3g14861 FvH4_3g14862 FvH4_3g14862 FvH4_3g14880 FvH4_3g14880 FvH4_3g14890 FvH4_3g14891 FvH4_3g14892 FvH4_3g14901 FvH4_3g14902
malus_domestica MD05G1233500.v1.1 MD05G1233600.v1.1 MD10G1209900.v1.1 MD10G1210000.v1.1 MD10G1210100.v1.1 MD10G1210300.v1.1 MD10G1210400.v1.1
prunus_persica Prupe.4G132900_v2.0.a1 Prupe.4G133200_v2.0.a1 Prupe.4G133200_v2.0.a1 Prupe.4G133200_v2.0.a1 Prupe.4G133300_v2.0.a1 Prupe.4G133300_v2.0.a1 Prupe.4G133400_v2.0.a1 Prupe.4G133500_v2.0.a1 Prupe.4G133500_v2.0.a1 Prupe.4G133600_v2.0.a1 Prupe.4G133600_v2.0.a1
pyrus_communis pycom05g21110 pycom05g21120 pycom10g17840
rosa_chinensis RchiOBHm_Chr5g0024361 RchiOBHm_Chr5g0024391 RchiOBHm_Chr5g0024411 RchiOBHm_Chr5g0024431 RchiOBHm_Chr5g0024451 RchiOBHm_Chr5g0024461 RchiOBHm_Chr5g0024471 RchiOBHm_Chr5g0024481 RchiOBHm_Chr5g0024501 RchiOBHm_Chr5g0024511
rosa_laevigata RLG00000032799 RLG00000032800 RLG00000032801 RLG00000032802 RLG00000032803
rosa_multiflora Rmu_sc0000761.1_g000010 Rmu_sc0000761.1_g000014 Rmu_sc0000761.1_g000018 Rmu_sc0000761.1_g000025 Rmu_sc0005861.1_g000002 Rmu_sc0005861.1_g000004 Rmu_sc0005861.1_g000007 Rmu_sc0011809.1_g000001 Rmu_sc0011809.1_g000006
rosa_roxburghii Rroxscaffold_1G00054740 Rroxscaffold_1G00054750 Rroxscaffold_1G00054760 Rroxscaffold_1G00054770 Rroxscaffold_1G00054780 Rroxscaffold_1G00054790 Rroxscaffold_1G00054840 Rroxscaffold_1G00055860 Rroxscaffold_3G00237770 Rroxscaffold_6G00389330
rosa_rugosa Rorug05G0083300 Rorug05G0083400 Rorug05G0083400
rosa_samantha Rh5AG174100 Rh5AG174300 Rh5AG174600 Rh5AG174700 Rh5AG175000 Rh5AG175300 Rh5BG171000 Rh5BG171400 Rh5BG171500 Rh5BG171600 Rh5BG171700 Rh5BG172100 Rh5BG172300 Rh5BG172500 Rh5CG187400 Rh5CG187700 Rh5CG187900 Rh5CG188000 Rh5CG188200 Rh5CG188400 Rh5CG188500 Rh5CG188600 Rh5DG173200 Rh5DG173400 Rh5DG173500 Rh5DG173700 Rh5DG173900 Rh5DG174000 Rh5DG174100
rosa_wichuraiana Rw5G015700 Rw5G015730 Rw5G015740 Rw5G015770 Rw5G015790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 294
AccII CGCG 1 cut(s) 403
AcsI RAATTY 3 cut(s) 357, 429, 617
AfaI GTAC 2 cut(s) 225, 635
AfiI CCNNNNNNNGG 1 cut(s) 311
AgsI TTSAA 2 cut(s) 356, 616
AjuI GAANNNNNNNTTGG 4 cut(s) 44, 76, 246, 278
AloI GAACNNNNNNTCC 2 cut(s) 509, 541
AluBI AGCT 4 cut(s) 45, 107, 569, 628
AluI AGCT 4 cut(s) 45, 107, 569, 628
Alw26I GTCTC 1 cut(s) 69
ApoI RAATTY 3 cut(s) 357, 429, 617
ArsI GACNNNNNNTTYG 2 cut(s) 68, 100
Asp700I GAANNNNTTC 1 cut(s) 386
AspLEI GCGC 1 cut(s) 403
AsuC2I CCSGG 1 cut(s) 546
AsuHPI GGTGA 1 cut(s) 178
BbsI GAAGAC 1 cut(s) 108
BccI CCATC 2 cut(s) 375, 528
BceAI ACGGC 1 cut(s) 74
BcnI CCSGG 1 cut(s) 546
BcoDI GTCTC 1 cut(s) 69
BfmI CTRYAG 1 cut(s) 512
BmcAI AGTACT 1 cut(s) 225
Bme1390I CCNGG 1 cut(s) 546
BmiI GGNNCC 1 cut(s) 365
BmrFI CCNGG 1 cut(s) 546
BmsI GCATC 1 cut(s) 206
BpiI GAAGAC 1 cut(s) 108
Bpu10I CCTNAGC 1 cut(s) 97
BpuEI CTTGAG 1 cut(s) 514
BpuMI CCSGG 1 cut(s) 546
Bsc4I CCNNNNNNNGG 1 cut(s) 311
Bse118I RCCGGY 1 cut(s) 311
Bse1I ACTGG 1 cut(s) 349
Bse3DI GCAATG 1 cut(s) 196
BseGI GGATG 3 cut(s) 221, 241, 335
BseLI CCNNNNNNNGG 1 cut(s) 311
BseMI GCAATG 1 cut(s) 196
BseMII CTCAG 2 cut(s) 62, 257
BseNI ACTGG 1 cut(s) 349
BseRI GAGGAG 1 cut(s) 579
BseYI CCCAGC 1 cut(s) 569
Bsh1236I CGCG 1 cut(s) 403
BsiSI CCGG 2 cut(s) 312, 545
BslI CCNNNNNNNGG 1 cut(s) 311
BsmAI GTCTC 1 cut(s) 69
Bsp143I GATC 2 cut(s) 283, 580
BspCNI CTCAG 2 cut(s) 61, 258
BspFNI CGCG 1 cut(s) 403
BspLI GGNNCC 1 cut(s) 365
BsrDI GCAATG 1 cut(s) 196
BsrFI RCCGGY 1 cut(s) 311
BsrI ACTGG 1 cut(s) 349
BssAI RCCGGY 1 cut(s) 311
BssMI GATC 2 cut(s) 283, 580
Bst4CI ACNGT 2 cut(s) 653, 683
Bst6I CTCTTC 1 cut(s) 203
BstDEI CTNAG 3 cut(s) 48, 97, 266
BstF5I GGATG 3 cut(s) 221, 241, 335
BstFNI CGCG 1 cut(s) 403
BstHHI GCGC 1 cut(s) 403
BstKTI GATC 2 cut(s) 286, 583
BstMAI GTCTC 1 cut(s) 69
BstMBI GATC 2 cut(s) 283, 580
BstMWI GCNNNNNNNGC 2 cut(s) 31, 409
BstNSI RCATGY 1 cut(s) 233
BstSCI CCNGG 1 cut(s) 544
BstSFI CTRYAG 1 cut(s) 512
BstUI CGCG 1 cut(s) 403
BstV2I GAAGAC 1 cut(s) 108
BstXI CCANNNNNNTGG 1 cut(s) 127
BtsCI GGATG 3 cut(s) 221, 241, 335
CfoI GCGC 1 cut(s) 403
Cfr10I RCCGGY 1 cut(s) 311
Csp6I GTAC 2 cut(s) 224, 634
CviAII CATG 5 cut(s) 127, 230, 308, 323, 434
CviJI RGCY 8 cut(s) 45, 101, 107, 182, 252, 569, 628, 677
CviKI_1 RGCY 8 cut(s) 45, 101, 107, 182, 252, 569, 628, 677
CviQI GTAC 2 cut(s) 224, 634
DdeI CTNAG 3 cut(s) 48, 97, 266
DpnI GATC 2 cut(s) 285, 582
DpnII GATC 2 cut(s) 283, 580
Eam1104I CTCTTC 1 cut(s) 203
EarI CTCTTC 1 cut(s) 203
FaeI CATG 5 cut(s) 130, 233, 311, 326, 437
FalI AAGNNNNNCTT 2 cut(s) 374, 406
FatI CATG 5 cut(s) 126, 229, 307, 322, 433
FblI GTMKAC 1 cut(s) 294
FokI GGATG 3 cut(s) 228, 248, 322
GlaI GCGC 1 cut(s) 402
GsaI CCCAGC 1 cut(s) 573
HapII CCGG 2 cut(s) 312, 545
HhaI GCGC 1 cut(s) 403
Hin1II CATG 5 cut(s) 130, 233, 311, 326, 437
Hin6I GCGC 1 cut(s) 401
HinP1I GCGC 1 cut(s) 401
HinfI GANTC 1 cut(s) 387
HpaII CCGG 2 cut(s) 312, 545
HphI GGTGA 1 cut(s) 178
Hpy166II GTNNAC 1 cut(s) 295
Hpy188I TCNGA 4 cut(s) 51, 68, 267, 340
Hpy188III TCNNGA 3 cut(s) 143, 371, 531
Hpy8I GTNNAC 1 cut(s) 295
HpyAV CCTTC 3 cut(s) 65, 376, 622
HpyCH4III ACNGT 2 cut(s) 653, 683
HpyCH4V TGCA 3 cut(s) 229, 241, 322
HpyF10VI GCNNNNNNNGC 2 cut(s) 31, 409
HpyF3I CTNAG 3 cut(s) 48, 97, 266
Hsp92II CATG 5 cut(s) 130, 233, 311, 326, 437
HspAI GCGC 1 cut(s) 401
Kzo9I GATC 2 cut(s) 283, 580
LmnI GCTCC 1 cut(s) 566
LweI GCATC 1 cut(s) 206
MaeIII GTNAC 3 cut(s) 314, 436, 653
MalI GATC 2 cut(s) 285, 582
MboI GATC 2 cut(s) 283, 580
MboII GAAGA 4 cut(s) 108, 220, 382, 530
MluCI AATT 5 cut(s) 200, 298, 357, 429, 617
MmeI TCCRAC 2 cut(s) 46, 577
MnlI CCTC 5 cut(s) 148, 156, 206, 315, 557
MroXI GAANNNNTTC 1 cut(s) 386
MseI TTAA 2 cut(s) 123, 176
MslI CAYNNNNRTG 2 cut(s) 125, 234
MspI CCGG 2 cut(s) 312, 545
MspR9I CCNGG 1 cut(s) 546
MvnI CGCG 1 cut(s) 403
MwoI GCNNNNNNNGC 2 cut(s) 31, 409
NciI CCSGG 1 cut(s) 546
NdeII GATC 2 cut(s) 283, 580
NlaIII CATG 5 cut(s) 130, 233, 311, 326, 437
NlaIV GGNNCC 1 cut(s) 365
NmuCI GTSAC 1 cut(s) 436
NspI RCATGY 1 cut(s) 233
PcsI WCGNNNNNNNCGW 1 cut(s) 283
PdmI GAANNNNTTC 1 cut(s) 386
PfeI GAWTC 1 cut(s) 387
PspFI CCCAGC 1 cut(s) 569
PspN4I GGNNCC 1 cut(s) 365
RsaI GTAC 2 cut(s) 225, 635
RsaNI GTAC 2 cut(s) 224, 634
RseI CAYNNNNRTG 2 cut(s) 125, 234
SaqAI TTAA 2 cut(s) 123, 176
Sau3AI GATC 2 cut(s) 283, 580
ScaI AGTACT 1 cut(s) 225
ScrFI CCNGG 1 cut(s) 546
SetI ASST 6 cut(s) 47, 109, 498, 571, 614, 630
SfaNI GCATC 1 cut(s) 206
SfcI CTRYAG 1 cut(s) 512
SmiMI CAYNNNNRTG 2 cut(s) 125, 234
SmlI CTYRAG 1 cut(s) 529
SmoI CTYRAG 1 cut(s) 529
Sse9I AATT 5 cut(s) 200, 298, 357, 429, 617
StyD4I CCNGG 1 cut(s) 544
TaaI ACNGT 2 cut(s) 653, 683
TaqI TCGA 2 cut(s) 144, 286
TasI AATT 5 cut(s) 200, 298, 357, 429, 617
TatI WGTACW 1 cut(s) 223
TfiI GAWTC 1 cut(s) 387
Tru1I TTAA 2 cut(s) 123, 176
Tru9I TTAA 2 cut(s) 123, 176
TseFI GTSAC 1 cut(s) 436
Tsp45I GTSAC 1 cut(s) 436
TspDTI ATGAA 3 cut(s) 395, 422, 567
XapI RAATTY 3 cut(s) 357, 429, 617
XceI RCATGY 1 cut(s) 233
XmiI GTMKAC 1 cut(s) 294
XmnI GAANNNNTTC 1 cut(s) 386
ZrmI AGTACT 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.