Rroxscaffold_1G00054770

At4g26485-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000364
Physical Location & Seq
Reverse (-)
76115181 .. 76117570
2390 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00054770.1

Sequence Viewer

Length: 492 bp
ATGAGCCAACACCCTTTTCTGAGTTGTATTCGGTTTGATCGAATAATCTACAATTTTCCTCATGCCGGTTACTTGCACGGTCAATCATCATCTGAACACAACCAGTTTCAAATTTGGTTCCATCGGGATTTGGTGAGGGGATTCTTCAAGAATGCGCGTGAAATGCTTACCGAAGTAGGAGAAATTCATGTGACACATAAGACAACATATCCTTTCAGTCAATGGGAAATAGTGATGTTAGCAGGAGATGTTGGGTTGTATCTGTTTCAGGAAGAAAAGTTCTCAAAATGGGATTATCCAGGTTATGAAAATAAGAGAGGAGCTGGGTTATGTGATCAAACTTTTCCTGTTGGAGAATGTAGCACCTTCAAATTTGCGAAGCTATTGTACTATTCTACCCCTTCCAGTTACTACATTGACTTGGTTCGGGCTTACGGTCAGGATTCTCGGAATAACGGTCCTTACATGCACCACTGCCATTCTTTTATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2431

Protein Analysis

163

Amino Acids

19.2

Weight (kDa)

6.78

Isoelectric Point (pI)

53.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BMT5-like PF10354 5 - 106 1.1e-26 rRNA (uridine-N3-)-methyltransferase BTM5-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000364)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26485
fragaria_vesca FvH4_3g14860 FvH4_3g14860 FvH4_3g14861 FvH4_3g14862 FvH4_3g14862 FvH4_3g14880 FvH4_3g14880 FvH4_3g14890 FvH4_3g14891 FvH4_3g14892 FvH4_3g14901 FvH4_3g14902
malus_domestica MD05G1233500.v1.1 MD05G1233600.v1.1 MD10G1209900.v1.1 MD10G1210000.v1.1 MD10G1210100.v1.1 MD10G1210300.v1.1 MD10G1210400.v1.1
prunus_persica Prupe.4G132900_v2.0.a1 Prupe.4G133200_v2.0.a1 Prupe.4G133200_v2.0.a1 Prupe.4G133200_v2.0.a1 Prupe.4G133300_v2.0.a1 Prupe.4G133300_v2.0.a1 Prupe.4G133400_v2.0.a1 Prupe.4G133500_v2.0.a1 Prupe.4G133500_v2.0.a1 Prupe.4G133600_v2.0.a1 Prupe.4G133600_v2.0.a1
pyrus_communis pycom05g21110 pycom05g21120 pycom10g17840
rosa_chinensis RchiOBHm_Chr5g0024361 RchiOBHm_Chr5g0024391 RchiOBHm_Chr5g0024411 RchiOBHm_Chr5g0024431 RchiOBHm_Chr5g0024451 RchiOBHm_Chr5g0024461 RchiOBHm_Chr5g0024471 RchiOBHm_Chr5g0024481 RchiOBHm_Chr5g0024501 RchiOBHm_Chr5g0024511
rosa_laevigata RLG00000032799 RLG00000032800 RLG00000032801 RLG00000032802 RLG00000032803
rosa_multiflora Rmu_sc0000761.1_g000010 Rmu_sc0000761.1_g000014 Rmu_sc0000761.1_g000018 Rmu_sc0000761.1_g000025 Rmu_sc0005861.1_g000002 Rmu_sc0005861.1_g000004 Rmu_sc0005861.1_g000007 Rmu_sc0011809.1_g000001 Rmu_sc0011809.1_g000006
rosa_roxburghii Rroxscaffold_1G00054740 Rroxscaffold_1G00054750 Rroxscaffold_1G00054760 Rroxscaffold_1G00054770 Rroxscaffold_1G00054780 Rroxscaffold_1G00054790 Rroxscaffold_1G00054840 Rroxscaffold_1G00055860 Rroxscaffold_3G00237770 Rroxscaffold_6G00389330
rosa_rugosa Rorug05G0083300 Rorug05G0083400 Rorug05G0083400
rosa_samantha Rh5AG174100 Rh5AG174300 Rh5AG174600 Rh5AG174700 Rh5AG175000 Rh5AG175300 Rh5BG171000 Rh5BG171400 Rh5BG171500 Rh5BG171600 Rh5BG171700 Rh5BG172100 Rh5BG172300 Rh5BG172500 Rh5CG187400 Rh5CG187700 Rh5CG187900 Rh5CG188000 Rh5CG188200 Rh5CG188400 Rh5CG188500 Rh5CG188600 Rh5DG173200 Rh5DG173400 Rh5DG173500 Rh5DG173700 Rh5DG173900 Rh5DG174000 Rh5DG174100
rosa_wichuraiana Rw5G015700 Rw5G015730 Rw5G015740 Rw5G015770 Rw5G015790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 157
AcsI RAATTY 3 cut(s) 111, 183, 371
AfaI GTAC 1 cut(s) 389
AfiI CCNNNNNNNGG 1 cut(s) 65
AgsI TTSAA 3 cut(s) 110, 148, 370
AjnI CCWGG 1 cut(s) 298
AjuI GAANNNNNNNTTGG 1 cut(s) 32
AloI GAACNNNNNNTCC 2 cut(s) 263, 295
AluBI AGCT 2 cut(s) 323, 382
AluI AGCT 2 cut(s) 323, 382
ApoI RAATTY 3 cut(s) 111, 183, 371
AspLEI GCGC 1 cut(s) 157
AspS9I GGNCC 1 cut(s) 458
AsuHPI GGTGA 1 cut(s) 145
AvaII GGWCC 1 cut(s) 458
BarI GAAGNNNNNNTAC 2 cut(s) 371, 403
BccI CCATC 1 cut(s) 129
BciT130I CCWGG 1 cut(s) 300
BclI TGATCA 1 cut(s) 334
Bme1390I CCNGG 1 cut(s) 300
Bme18I GGWCC 1 cut(s) 458
BmgT120I GGNCC 1 cut(s) 458
BmiI GGNNCC 1 cut(s) 119
BmrFI CCNGG 1 cut(s) 300
Bsc4I CCNNNNNNNGG 1 cut(s) 65
Bse118I RCCGGY 1 cut(s) 65
Bse1I ACTGG 2 cut(s) 103, 405
BseBI CCWGG 1 cut(s) 300
BseLI CCNNNNNNNGG 1 cut(s) 65
BseMII CTCAG 1 cut(s) 11
BseNI ACTGG 2 cut(s) 103, 405
BseRI GAGGAG 1 cut(s) 333
BseYI CCCAGC 1 cut(s) 323
Bsh1236I CGCG 1 cut(s) 157
BsiSI CCGG 1 cut(s) 66
BslI CCNNNNNNNGG 1 cut(s) 65
BsmI GAATGC 1 cut(s) 157
Bsp143I GATC 2 cut(s) 37, 334
BspCNI CTCAG 1 cut(s) 12
BspFNI CGCG 1 cut(s) 157
BspLI GGNNCC 1 cut(s) 119
BsrFI RCCGGY 1 cut(s) 65
BsrI ACTGG 2 cut(s) 103, 405
BssAI RCCGGY 1 cut(s) 65
BssMI GATC 2 cut(s) 37, 334
Bst2UI CCWGG 1 cut(s) 300
Bst4CI ACNGT 3 cut(s) 80, 437, 458
BstDEI CTNAG 1 cut(s) 20
BstFNI CGCG 1 cut(s) 157
BstHHI GCGC 1 cut(s) 157
BstKTI GATC 2 cut(s) 40, 337
BstMBI GATC 2 cut(s) 37, 334
BstMWI GCNNNNNNNGC 1 cut(s) 163
BstNI CCWGG 1 cut(s) 300
BstNSI RCATGY 1 cut(s) 469
BstSCI CCNGG 1 cut(s) 298
BstUI CGCG 1 cut(s) 157
BtsI GCAGTG 1 cut(s) 472
BtsIMutI CAGTG 1 cut(s) 472
CfoI GCGC 1 cut(s) 157
Cfr10I RCCGGY 1 cut(s) 65
Cfr13I GGNCC 1 cut(s) 458
Csp6I GTAC 1 cut(s) 388
CviAII CATG 3 cut(s) 62, 188, 466
CviJI RGCY 4 cut(s) 6, 323, 382, 431
CviKI_1 RGCY 4 cut(s) 6, 323, 382, 431
CviQI GTAC 1 cut(s) 388
DdeI CTNAG 1 cut(s) 20
DpnI GATC 2 cut(s) 39, 336
DpnII GATC 2 cut(s) 37, 334
Eco47I GGWCC 1 cut(s) 458
EcoRII CCWGG 1 cut(s) 298
FaeI CATG 3 cut(s) 65, 191, 469
FaiI YATR 9 cut(s) 63, 189, 198, 208, 306, 331, 467, 488, 490
FatI CATG 3 cut(s) 61, 187, 465
FbaI TGATCA 1 cut(s) 334
GlaI GCGC 1 cut(s) 156
GsaI CCCAGC 1 cut(s) 327
HapII CCGG 1 cut(s) 66
HhaI GCGC 1 cut(s) 157
Hin1II CATG 3 cut(s) 65, 191, 469
Hin6I GCGC 1 cut(s) 155
HinP1I GCGC 1 cut(s) 155
HinfI GANTC 2 cut(s) 141, 443
HpaII CCGG 1 cut(s) 66
HphI GGTGA 1 cut(s) 145
Hpy188I TCNGA 3 cut(s) 21, 94, 450
Hpy188III TCNNGA 4 cut(s) 125, 148, 269, 440
HpyAV CCTTC 2 cut(s) 376, 411
HpyCH4III ACNGT 3 cut(s) 80, 437, 458
HpyCH4V TGCA 2 cut(s) 76, 469
HpyF10VI GCNNNNNNNGC 1 cut(s) 163
HpyF3I CTNAG 1 cut(s) 20
Hsp92II CATG 3 cut(s) 65, 191, 469
HspAI GCGC 1 cut(s) 155
Ksp22I TGATCA 1 cut(s) 334
Kzo9I GATC 2 cut(s) 37, 334
LmnI GCTCC 1 cut(s) 320
MaeIII GTNAC 3 cut(s) 68, 190, 407
MalI GATC 2 cut(s) 39, 336
MboI GATC 2 cut(s) 37, 334
MboII GAAGA 2 cut(s) 136, 284
MluCI AATT 4 cut(s) 52, 111, 183, 371
MmeI TCCRAC 1 cut(s) 331
MnlI CCTC 3 cut(s) 69, 129, 311
MspI CCGG 1 cut(s) 66
MspR9I CCNGG 1 cut(s) 300
Mva1269I GAATGC 1 cut(s) 157
MvaI CCWGG 1 cut(s) 300
MvnI CGCG 1 cut(s) 157
MwoI GCNNNNNNNGC 1 cut(s) 163
NdeII GATC 2 cut(s) 37, 334
NlaIII CATG 3 cut(s) 65, 191, 469
NlaIV GGNNCC 1 cut(s) 119
NmuCI GTSAC 1 cut(s) 190
NspI RCATGY 1 cut(s) 469
PcsI WCGNNNNNNNCGW 1 cut(s) 37
PctI GAATGC 1 cut(s) 157
PfeI GAWTC 2 cut(s) 141, 443
Psp6I CCWGG 1 cut(s) 298
PspFI CCCAGC 1 cut(s) 323
PspGI CCWGG 1 cut(s) 298
PspN4I GGNNCC 1 cut(s) 119
PspPI GGNCC 1 cut(s) 458
RsaI GTAC 1 cut(s) 389
RsaNI GTAC 1 cut(s) 388
Sau3AI GATC 2 cut(s) 37, 334
Sau96I GGNCC 1 cut(s) 458
ScrFI CCNGG 1 cut(s) 300
SetI ASST 4 cut(s) 304, 325, 368, 384
SinI GGWCC 1 cut(s) 458
Sse9I AATT 4 cut(s) 52, 111, 183, 371
StyD4I CCNGG 1 cut(s) 298
TaaI ACNGT 3 cut(s) 80, 437, 458
TaqI TCGA 1 cut(s) 40
TasI AATT 4 cut(s) 52, 111, 183, 371
TatI WGTACW 1 cut(s) 387
TfiI GAWTC 2 cut(s) 141, 443
TscAI CASTG 1 cut(s) 479
TseFI GTSAC 1 cut(s) 190
Tsp45I GTSAC 1 cut(s) 190
TspDTI ATGAA 2 cut(s) 176, 321
TspRI CASTG 1 cut(s) 479
VpaK11BI GGWCC 1 cut(s) 458
XapI RAATTY 3 cut(s) 111, 183, 371
XceI RCATGY 1 cut(s) 469
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.