Rmu_sc0011809.1_g000001

At4g26485-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011809.1
Physical Location & Seq
Reverse (-)
1 .. 807
807 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011809.1_g000001.1.cds

Sequence Viewer

Length: 365 bp
atggaagtctttggctttgagaagcgtatcaagcactacaccagctatcagacaatactcttggtcggagaaggagacttctcctttgccgtttccttagccagagctttcggctcttccaccaagatgatcgccacttctctcgacaccagagagtcattgagggagaagtattcaaaggctatgagcaatgtgatggaattggagaacaggggatgcagagtacttcatgaagtggatgtgcacagaatgagccaacacccttttctgagttgtattcggtttgatcgaataatctacaattttcctcatgccggttacttgcacgatcaatcatcatccgagcacaaccagtctcaaatttg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

121

Amino Acids

13.99

Weight (kDa)

7.06

Isoelectric Point (pI)

46.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000364)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26485
fragaria_vesca FvH4_3g14860 FvH4_3g14860 FvH4_3g14861 FvH4_3g14862 FvH4_3g14862 FvH4_3g14880 FvH4_3g14880 FvH4_3g14890 FvH4_3g14891 FvH4_3g14892 FvH4_3g14901 FvH4_3g14902
malus_domestica MD05G1233500.v1.1 MD05G1233600.v1.1 MD10G1209900.v1.1 MD10G1210000.v1.1 MD10G1210100.v1.1 MD10G1210300.v1.1 MD10G1210400.v1.1
prunus_persica Prupe.4G132900_v2.0.a1 Prupe.4G133200_v2.0.a1 Prupe.4G133200_v2.0.a1 Prupe.4G133200_v2.0.a1 Prupe.4G133300_v2.0.a1 Prupe.4G133300_v2.0.a1 Prupe.4G133400_v2.0.a1 Prupe.4G133500_v2.0.a1 Prupe.4G133500_v2.0.a1 Prupe.4G133600_v2.0.a1 Prupe.4G133600_v2.0.a1
pyrus_communis pycom05g21110 pycom05g21120 pycom10g17840
rosa_chinensis RchiOBHm_Chr5g0024361 RchiOBHm_Chr5g0024391 RchiOBHm_Chr5g0024411 RchiOBHm_Chr5g0024431 RchiOBHm_Chr5g0024451 RchiOBHm_Chr5g0024461 RchiOBHm_Chr5g0024471 RchiOBHm_Chr5g0024481 RchiOBHm_Chr5g0024501 RchiOBHm_Chr5g0024511
rosa_laevigata RLG00000032799 RLG00000032800 RLG00000032801 RLG00000032802 RLG00000032803
rosa_multiflora Rmu_sc0000761.1_g000010 Rmu_sc0000761.1_g000014 Rmu_sc0000761.1_g000018 Rmu_sc0000761.1_g000025 Rmu_sc0005861.1_g000002 Rmu_sc0005861.1_g000004 Rmu_sc0005861.1_g000007 Rmu_sc0011809.1_g000001 Rmu_sc0011809.1_g000006
rosa_roxburghii Rroxscaffold_1G00054740 Rroxscaffold_1G00054750 Rroxscaffold_1G00054760 Rroxscaffold_1G00054770 Rroxscaffold_1G00054780 Rroxscaffold_1G00054790 Rroxscaffold_1G00054840 Rroxscaffold_1G00055860 Rroxscaffold_3G00237770 Rroxscaffold_6G00389330
rosa_rugosa Rorug05G0083300 Rorug05G0083400 Rorug05G0083400
rosa_samantha Rh5AG174100 Rh5AG174300 Rh5AG174600 Rh5AG174700 Rh5AG175000 Rh5AG175300 Rh5BG171000 Rh5BG171400 Rh5BG171500 Rh5BG171600 Rh5BG171700 Rh5BG172100 Rh5BG172300 Rh5BG172500 Rh5CG187400 Rh5CG187700 Rh5CG187900 Rh5CG188000 Rh5CG188200 Rh5CG188400 Rh5CG188500 Rh5CG188600 Rh5DG173200 Rh5DG173400 Rh5DG173500 Rh5DG173700 Rh5DG173900 Rh5DG174000 Rh5DG174100
rosa_wichuraiana Rw5G015700 Rw5G015730 Rw5G015740 Rw5G015770 Rw5G015790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 360
AfaI GTAC 1 cut(s) 225
AfiI CCNNNNNNNGG 1 cut(s) 314
AgsI TTSAA 1 cut(s) 177
AjuI GAANNNNNNNTTGG 2 cut(s) 249, 281
AluBI AGCT 2 cut(s) 45, 107
AluI AGCT 2 cut(s) 45, 107
Alw21I GWGCWC 2 cut(s) 246, 348
Alw26I GTCTC 2 cut(s) 69, 360
Alw44I GTGCAC 1 cut(s) 242
ApaLI GTGCAC 1 cut(s) 242
ApoI RAATTY 1 cut(s) 360
ArsI GACNNNNNNTTYG 2 cut(s) 68, 100
BaeGI GKGCMC 1 cut(s) 246
Bbv12I GWGCWC 2 cut(s) 246, 348
BccI CCATC 1 cut(s) 190
BceAI ACGGC 1 cut(s) 74
BcoDI GTCTC 2 cut(s) 69, 360
BmcAI AGTACT 1 cut(s) 225
BmsI GCATC 1 cut(s) 206
Bpu10I CCTNAGC 1 cut(s) 97
Bsc4I CCNNNNNNNGG 1 cut(s) 314
Bse118I RCCGGY 1 cut(s) 314
Bse1I ACTGG 1 cut(s) 352
Bse3DI GCAATG 1 cut(s) 196
BseGI GGATG 3 cut(s) 221, 244, 338
BseLI CCNNNNNNNGG 1 cut(s) 314
BseMI GCAATG 1 cut(s) 196
BseMII CTCAG 1 cut(s) 260
BseNI ACTGG 1 cut(s) 352
BseSI GKGCMC 1 cut(s) 246
BsiHKAI GWGCWC 2 cut(s) 246, 348
BsiSI CCGG 1 cut(s) 315
BslI CCNNNNNNNGG 1 cut(s) 314
BsmAI GTCTC 2 cut(s) 69, 360
Bsp1286I GDGCHC 2 cut(s) 246, 348
Bsp143I GATC 3 cut(s) 129, 286, 328
BspCNI CTCAG 1 cut(s) 261
BspHI TCATGA 1 cut(s) 229
BspQI GCTCTTC 1 cut(s) 121
BsrDI GCAATG 1 cut(s) 196
BsrFI RCCGGY 1 cut(s) 314
BsrI ACTGG 1 cut(s) 352
BssAI RCCGGY 1 cut(s) 314
BssMI GATC 3 cut(s) 129, 286, 328
Bst6I CTCTTC 1 cut(s) 121
BstDEI CTNAG 2 cut(s) 97, 269
BstF5I GGATG 3 cut(s) 221, 244, 338
BstKTI GATC 3 cut(s) 132, 289, 331
BstMAI GTCTC 2 cut(s) 69, 360
BstMBI GATC 3 cut(s) 129, 286, 328
BstMWI GCNNNNNNNGC 1 cut(s) 31
BstSLI GKGCMC 1 cut(s) 246
BtsCI GGATG 3 cut(s) 221, 244, 338
CciI TCATGA 1 cut(s) 229
Cfr10I RCCGGY 1 cut(s) 314
Csp6I GTAC 1 cut(s) 224
CviAII CATG 2 cut(s) 230, 311
CviJI RGCY 7 cut(s) 15, 45, 101, 107, 114, 182, 255
CviKI_1 RGCY 7 cut(s) 15, 45, 101, 107, 114, 182, 255
CviQI GTAC 1 cut(s) 224
DdeI CTNAG 2 cut(s) 97, 269
DpnI GATC 3 cut(s) 131, 288, 330
DpnII GATC 3 cut(s) 129, 286, 328
Eam1104I CTCTTC 1 cut(s) 121
EarI CTCTTC 1 cut(s) 121
FaeI CATG 2 cut(s) 233, 314
FaiI YATR 3 cut(s) 185, 231, 312
FatI CATG 2 cut(s) 229, 310
FokI GGATG 3 cut(s) 228, 251, 325
HapII CCGG 1 cut(s) 315
Hin1II CATG 2 cut(s) 233, 314
HinfI GANTC 1 cut(s) 155
HpaII CCGG 1 cut(s) 315
Hpy166II GTNNAC 1 cut(s) 244
Hpy188I TCNGA 4 cut(s) 51, 68, 270, 343
Hpy188III TCNNGA 2 cut(s) 143, 230
Hpy8I GTNNAC 1 cut(s) 244
HpyAV CCTTC 1 cut(s) 65
HpyCH4V TGCA 3 cut(s) 219, 244, 325
HpyF10VI GCNNNNNNNGC 1 cut(s) 31
HpyF3I CTNAG 2 cut(s) 97, 269
Hsp92II CATG 2 cut(s) 233, 314
Kzo9I GATC 3 cut(s) 129, 286, 328
LguI GCTCTTC 1 cut(s) 121
LpnPI CCDG 5 cut(s) 55, 115, 163, 196, 328
LweI GCATC 1 cut(s) 206
MaeIII GTNAC 1 cut(s) 317
MalI GATC 3 cut(s) 131, 288, 330
MboI GATC 3 cut(s) 129, 286, 328
MboII GAAGA 1 cut(s) 108
MhlI GDGCHC 2 cut(s) 246, 348
MluCI AATT 3 cut(s) 200, 301, 360
MlyI GAGTC 1 cut(s) 164
MmeI TCCRAC 1 cut(s) 46
MnlI CCTC 2 cut(s) 156, 318
MslI CAYNNNNRTG 1 cut(s) 125
MspI CCGG 1 cut(s) 315
MwoI GCNNNNNNNGC 1 cut(s) 31
NdeII GATC 3 cut(s) 129, 286, 328
NlaIII CATG 2 cut(s) 233, 314
PagI TCATGA 1 cut(s) 229
PciSI GCTCTTC 1 cut(s) 121
PcsI WCGNNNNNNNCGW 1 cut(s) 286
PleI GAGTC 1 cut(s) 163
PpsI GAGTC 1 cut(s) 163
RsaI GTAC 1 cut(s) 225
RsaNI GTAC 1 cut(s) 224
RseI CAYNNNNRTG 1 cut(s) 125
SapI GCTCTTC 1 cut(s) 121
Sau3AI GATC 3 cut(s) 129, 286, 328
ScaI AGTACT 1 cut(s) 225
SchI GAGTC 1 cut(s) 164
SduI GDGCHC 2 cut(s) 246, 348
SetI ASST 2 cut(s) 47, 109
SfaNI GCATC 1 cut(s) 206
SmiMI CAYNNNNRTG 1 cut(s) 125
Sse9I AATT 3 cut(s) 200, 301, 360
TaqI TCGA 2 cut(s) 144, 289
TasI AATT 3 cut(s) 200, 301, 360
TatI WGTACW 1 cut(s) 223
TspDTI ATGAA 2 cut(s) 218, 246
VneI GTGCAC 1 cut(s) 242
XapI RAATTY 1 cut(s) 360
ZrmI AGTACT 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.