Prupe.4G133600_v2.0.a1

At4g26485-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000364
Physical Location & Seq
Forward (+)
7397645 .. 7399111
1467 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G133600.1

Sequence Viewer

Length: 675 bp
ATGTTCAAGAAAAAAATTAAGAACAAGAGATCTAAAATGGGAGAGAAAACGATTATGCACTATAGCAGCTCTCAGAAGATACTCTTAGTGGGTGAGGGCAACTTCTCCTTTGCTGCTTGCTTAGCCAAAGAATTTGGCTCTGCTGTGAAGATGGTTGCAACTTCTTTCGACCCCGAAGAGTCTTTAATGCAAAAGTATTCAAATGTAACGAGCACTTTGAATGAGTTAAAGGGCAGGGGATGTACGGTGTTGCATGAGGTGGATGTTCATACCATGAGCCAACACCCCCGGCTAACGAATAGACGATTCGATCGCATTGTCTTCAATTTTCCTCATGCAGGTTTCATCTTGATGGAACATAACAAGATCCAAATTAAGTTGCATCAGGATTTGGTCAAGGCTTACTTCACCAGTGCACGTGAAATGCTCACAGAAAGTGGAGAAGTTCATGTGACTCACAAGACCACCCATCCTTTCAGTAAGTGGAACATAGTGAAGTTAGCAGAAGAGGTTGGGTTGTTTCTGGTTGAGGAAGCACAATTCACACGAGCGGATTATCCAGGTTATATAAACAAGAAAGGAAGTGGAAGGAAATGCAACCGTACTTTCCGTGTTGGACAGTGTAGCACCTACAAATTTGCCAAGCTACCACTTCAACCGTACTTTGTGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2431

Protein Analysis

225

Amino Acids

25.68

Weight (kDa)

9.68

Isoelectric Point (pI)

42.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000364)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26485
fragaria_vesca FvH4_3g14860 FvH4_3g14860 FvH4_3g14861 FvH4_3g14862 FvH4_3g14862 FvH4_3g14880 FvH4_3g14880 FvH4_3g14890 FvH4_3g14891 FvH4_3g14892 FvH4_3g14901 FvH4_3g14902
malus_domestica MD05G1233500.v1.1 MD05G1233600.v1.1 MD10G1209900.v1.1 MD10G1210000.v1.1 MD10G1210100.v1.1 MD10G1210300.v1.1 MD10G1210400.v1.1
prunus_persica Prupe.4G132900_v2.0.a1 Prupe.4G133200_v2.0.a1 Prupe.4G133200_v2.0.a1 Prupe.4G133200_v2.0.a1 Prupe.4G133300_v2.0.a1 Prupe.4G133300_v2.0.a1 Prupe.4G133400_v2.0.a1 Prupe.4G133500_v2.0.a1 Prupe.4G133500_v2.0.a1 Prupe.4G133600_v2.0.a1 Prupe.4G133600_v2.0.a1
pyrus_communis pycom05g21110 pycom05g21120 pycom10g17840
rosa_chinensis RchiOBHm_Chr5g0024361 RchiOBHm_Chr5g0024391 RchiOBHm_Chr5g0024411 RchiOBHm_Chr5g0024431 RchiOBHm_Chr5g0024451 RchiOBHm_Chr5g0024461 RchiOBHm_Chr5g0024471 RchiOBHm_Chr5g0024481 RchiOBHm_Chr5g0024501 RchiOBHm_Chr5g0024511
rosa_laevigata RLG00000032799 RLG00000032800 RLG00000032801 RLG00000032802 RLG00000032803
rosa_multiflora Rmu_sc0000761.1_g000010 Rmu_sc0000761.1_g000014 Rmu_sc0000761.1_g000018 Rmu_sc0000761.1_g000025 Rmu_sc0005861.1_g000002 Rmu_sc0005861.1_g000004 Rmu_sc0005861.1_g000007 Rmu_sc0011809.1_g000001 Rmu_sc0011809.1_g000006
rosa_roxburghii Rroxscaffold_1G00054740 Rroxscaffold_1G00054750 Rroxscaffold_1G00054760 Rroxscaffold_1G00054770 Rroxscaffold_1G00054780 Rroxscaffold_1G00054790 Rroxscaffold_1G00054840 Rroxscaffold_1G00055860 Rroxscaffold_3G00237770 Rroxscaffold_6G00389330
rosa_rugosa Rorug05G0083300 Rorug05G0083400 Rorug05G0083400
rosa_samantha Rh5AG174100 Rh5AG174300 Rh5AG174600 Rh5AG174700 Rh5AG175000 Rh5AG175300 Rh5BG171000 Rh5BG171400 Rh5BG171500 Rh5BG171600 Rh5BG171700 Rh5BG172100 Rh5BG172300 Rh5BG172500 Rh5CG187400 Rh5CG187700 Rh5CG187900 Rh5CG188000 Rh5CG188200 Rh5CG188400 Rh5CG188500 Rh5CG188600 Rh5DG173200 Rh5DG173400 Rh5DG173500 Rh5DG173700 Rh5DG173900 Rh5DG174000 Rh5DG174100
rosa_wichuraiana Rw5G015700 Rw5G015730 Rw5G015740 Rw5G015770 Rw5G015790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 329
AccBSI CCGCTC 1 cut(s) 551
AciI CCGC 1 cut(s) 551
AclWI GGATC 1 cut(s) 361
AcsI RAATTY 2 cut(s) 131, 635
AcvI CACGTG 1 cut(s) 419
AfaI GTAC 3 cut(s) 244, 604, 662
AfiI CCNNNNNNNGG 1 cut(s) 338
AgsI TTSAA 5 cut(s) 7, 201, 220, 325, 656
AjnI CCWGG 1 cut(s) 559
AluBI AGCT 2 cut(s) 69, 646
AluI AGCT 2 cut(s) 69, 646
Alw21I GWGCWC 2 cut(s) 215, 418
Alw44I GTGCAC 1 cut(s) 414
AlwI GGATC 1 cut(s) 361
ApaLI GTGCAC 1 cut(s) 414
ApeKI GCWGC 2 cut(s) 66, 113
ApoI RAATTY 2 cut(s) 131, 635
AsuC2I CCSGG 1 cut(s) 289
AsuHPI GGTGA 2 cut(s) 104, 400
BaeGI GKGCMC 1 cut(s) 418
BauI CACGAG 1 cut(s) 546
BbrPI CACGTG 1 cut(s) 419
BbsI GAAGAC 1 cut(s) 313
Bbv12I GWGCWC 2 cut(s) 215, 418
BbvI GCAGC 2 cut(s) 78, 100
BccI CCATC 3 cut(s) 145, 346, 477
BciT130I CCWGG 1 cut(s) 561
BcnI CCSGG 1 cut(s) 289
BfmI CTRYAG 1 cut(s) 61
BfuAI ACCTGC 1 cut(s) 329
BglII AGATCT 1 cut(s) 29
BisI GCNGC 2 cut(s) 67, 114
BlpI GCTNAGC 1 cut(s) 121
BlsI GCNGC 2 cut(s) 68, 115
Bme1390I CCNGG 2 cut(s) 289, 561
BmrFI CCNGG 2 cut(s) 289, 561
BmsI GCATC 1 cut(s) 391
BpiI GAAGAC 1 cut(s) 313
Bpu1102I GCTNAGC 1 cut(s) 121
BpuMI CCSGG 1 cut(s) 289
BsaAI YACGTR 1 cut(s) 419
BsaJI CCNNGG 1 cut(s) 287
Bsc4I CCNNNNNNNGG 1 cut(s) 338
Bse1I ACTGG 1 cut(s) 411
BseBI CCWGG 1 cut(s) 561
BseDI CCNNGG 1 cut(s) 287
BseGI GGATG 3 cut(s) 245, 268, 469
BseLI CCNNNNNNNGG 1 cut(s) 338
BseMII CTCAG 1 cut(s) 86
BseNI ACTGG 1 cut(s) 411
BseSI GKGCMC 1 cut(s) 418
BseXI GCAGC 2 cut(s) 78, 100
Bsh1285I CGRYCG 1 cut(s) 313
BsiEI CGRYCG 1 cut(s) 313
BsiHKAI GWGCWC 2 cut(s) 215, 418
BsiSI CCGG 1 cut(s) 289
BslI CCNNNNNNNGG 1 cut(s) 338
Bsp1286I GDGCHC 2 cut(s) 215, 418
Bsp143I GATC 3 cut(s) 29, 310, 366
Bsp1720I GCTNAGC 1 cut(s) 121
BspACI CCGC 1 cut(s) 551
BspCNI CTCAG 1 cut(s) 85
BspMI ACCTGC 1 cut(s) 329
BspPI GGATC 1 cut(s) 361
BsrBI CCGCTC 1 cut(s) 551
BsrI ACTGG 1 cut(s) 411
BssECI CCNNGG 1 cut(s) 287
BssMI GATC 3 cut(s) 29, 310, 366
BssSI CACGAG 1 cut(s) 546
Bst2BI CACGAG 1 cut(s) 546
Bst2UI CCWGG 1 cut(s) 561
Bst4CI ACNGT 4 cut(s) 247, 602, 621, 660
Bst6I CTCTTC 2 cut(s) 171, 501
BstBAI YACGTR 1 cut(s) 419
BstC8I GCNNGC 1 cut(s) 118
BstDEI CTNAG 3 cut(s) 72, 85, 121
BstENI CCTNNNNNAGG 1 cut(s) 336
BstF5I GGATG 3 cut(s) 245, 268, 469
BstKTI GATC 3 cut(s) 32, 313, 369
BstMBI GATC 3 cut(s) 29, 310, 366
BstMCI CGRYCG 1 cut(s) 313
BstMWI GCNNNNNNNGC 1 cut(s) 122
BstNI CCWGG 1 cut(s) 561
BstSCI CCNGG 2 cut(s) 287, 559
BstSFI CTRYAG 1 cut(s) 61
BstSLI GKGCMC 1 cut(s) 418
BstV1I GCAGC 2 cut(s) 78, 100
BstV2I GAAGAC 1 cut(s) 313
BstX2I RGATCY 2 cut(s) 29, 366
BstYI RGATCY 2 cut(s) 29, 366
BtsCI GGATG 3 cut(s) 245, 268, 469
BtsIMutI CAGTG 2 cut(s) 418, 626
BveI ACCTGC 1 cut(s) 329
Cac8I GCNNGC 1 cut(s) 118
Csp6I GTAC 3 cut(s) 243, 603, 661
CviAII CATG 4 cut(s) 254, 274, 335, 449
CviJI RGCY 7 cut(s) 69, 125, 138, 279, 292, 401, 646
CviKI_1 RGCY 7 cut(s) 69, 125, 138, 279, 292, 401, 646
CviQI GTAC 3 cut(s) 243, 603, 661
DdeI CTNAG 3 cut(s) 72, 85, 121
DpnI GATC 3 cut(s) 31, 312, 368
DpnII GATC 3 cut(s) 29, 310, 366
Eam1104I CTCTTC 2 cut(s) 171, 501
EarI CTCTTC 2 cut(s) 171, 501
Eco72I CACGTG 1 cut(s) 419
EcoNI CCTNNNNNAGG 1 cut(s) 336
EcoRII CCWGG 1 cut(s) 559
FaeI CATG 4 cut(s) 257, 277, 338, 452
FalI AAGNNNNNCTT 4 cut(s) 68, 100, 389, 421
FatI CATG 4 cut(s) 253, 273, 334, 448
Fnu4HI GCNGC 2 cut(s) 67, 114
FokI GGATG 3 cut(s) 252, 275, 456
Fsp4HI GCNGC 2 cut(s) 67, 114
GluI GCNGC 2 cut(s) 67, 114
HapII CCGG 1 cut(s) 289
Hin1II CATG 4 cut(s) 257, 277, 338, 452
HinfI GANTC 3 cut(s) 179, 306, 454
HpaII CCGG 1 cut(s) 289
HphI GGTGA 2 cut(s) 104, 400
Hpy166II GTNNAC 1 cut(s) 416
Hpy188I TCNGA 1 cut(s) 75
Hpy188III TCNNGA 4 cut(s) 7, 349, 386, 672
Hpy8I GTNNAC 1 cut(s) 416
HpyAV CCTTC 1 cut(s) 582
HpyCH4III ACNGT 4 cut(s) 247, 602, 621, 660
HpyCH4IV ACGT 1 cut(s) 418
HpyCH4V TGCA 8 cut(s) 58, 158, 190, 253, 338, 382, 416, 597
HpyF10VI GCNNNNNNNGC 1 cut(s) 122
HpyF3I CTNAG 3 cut(s) 72, 85, 121
HpySE526I ACGT 1 cut(s) 418
Hsp92II CATG 4 cut(s) 257, 277, 338, 452
Kzo9I GATC 3 cut(s) 29, 310, 366
LpnPI CCDG 8 cut(s) 220, 302, 324, 371, 424, 509, 546, 573
Lsp1109I GCAGC 2 cut(s) 78, 100
LweI GCATC 1 cut(s) 391
MaeII ACGT 1 cut(s) 418
MaeIII GTNAC 2 cut(s) 205, 451
MalI GATC 3 cut(s) 31, 312, 368
MbiI CCGCTC 1 cut(s) 551
MboI GATC 3 cut(s) 29, 310, 366
MboII GAAGA 5 cut(s) 88, 160, 188, 313, 518
MflI RGATCY 2 cut(s) 29, 366
MhlI GDGCHC 2 cut(s) 215, 418
MluCI AATT 6 cut(s) 15, 131, 325, 372, 539, 635
MlyI GAGTC 2 cut(s) 188, 448
MmeI TCCRAC 1 cut(s) 595
MnlI CCTC 5 cut(s) 88, 250, 342, 502, 523
MseI TTAA 4 cut(s) 18, 185, 227, 375
MslI CAYNNNNRTG 1 cut(s) 350
MspI CCGG 1 cut(s) 289
MspR9I CCNGG 2 cut(s) 289, 561
MvaI CCWGG 1 cut(s) 561
MwoI GCNNNNNNNGC 1 cut(s) 122
NciI CCSGG 1 cut(s) 289
NdeII GATC 3 cut(s) 29, 310, 366
NlaIII CATG 4 cut(s) 257, 277, 338, 452
NmuCI GTSAC 1 cut(s) 451
PfeI GAWTC 1 cut(s) 306
PkrI GCNGC 2 cut(s) 68, 115
Ple19I CGATCG 1 cut(s) 313
PleI GAGTC 2 cut(s) 187, 448
PmaCI CACGTG 1 cut(s) 419
PmlI CACGTG 1 cut(s) 419
PpsI GAGTC 2 cut(s) 187, 448
Ppu21I YACGTR 1 cut(s) 419
Psp6I CCWGG 1 cut(s) 559
PspCI CACGTG 1 cut(s) 419
PspGI CCWGG 1 cut(s) 559
PsuI RGATCY 2 cut(s) 29, 366
PvuI CGATCG 1 cut(s) 313
RsaI GTAC 3 cut(s) 244, 604, 662
RsaNI GTAC 3 cut(s) 243, 603, 661
RseI CAYNNNNRTG 1 cut(s) 350
SaqAI TTAA 4 cut(s) 18, 185, 227, 375
SatI GCNGC 2 cut(s) 67, 114
Sau3AI GATC 3 cut(s) 29, 310, 366
SchI GAGTC 2 cut(s) 188, 448
ScrFI CCNGG 2 cut(s) 289, 561
SduI GDGCHC 2 cut(s) 215, 418
SetI ASST 8 cut(s) 71, 261, 343, 421, 513, 565, 632, 648
SfaNI GCATC 1 cut(s) 391
SfcI CTRYAG 1 cut(s) 61
SmiMI CAYNNNNRTG 1 cut(s) 350
Sse9I AATT 6 cut(s) 15, 131, 325, 372, 539, 635
SsiI CCGC 1 cut(s) 551
StyD4I CCNGG 2 cut(s) 287, 559
TaaI ACNGT 4 cut(s) 247, 602, 621, 660
TaiI ACGT 1 cut(s) 421
TaqI TCGA 2 cut(s) 168, 309
TasI AATT 6 cut(s) 15, 131, 325, 372, 539, 635
TfiI GAWTC 1 cut(s) 306
Tru1I TTAA 4 cut(s) 18, 185, 227, 375
Tru9I TTAA 4 cut(s) 18, 185, 227, 375
TscAI CASTG 2 cut(s) 418, 626
TseFI GTSAC 1 cut(s) 451
TseI GCWGC 2 cut(s) 66, 113
Tsp45I GTSAC 1 cut(s) 451
TspDTI ATGAA 3 cut(s) 257, 334, 437
TspGWI ACGGA 1 cut(s) 599
TspRI CASTG 2 cut(s) 418, 626
VneI GTGCAC 1 cut(s) 414
XagI CCTNNNNNAGG 1 cut(s) 336
XapI RAATTY 2 cut(s) 131, 635
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.