FvH4_3g14890

At4g26485-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000364
Physical Location & Seq
Reverse (-)
9208115 .. 9209379
1265 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g14890.t1

Sequence Viewer

Length: 558 bp
ATGAGGAAAAAAGGCGTGGCAGAAGAGAAAACAATCGTGCATTATAGCAGCTCTCAGAAAATATTATTGGTGGGTGAGGGAGACTTTTCCTTTGCTGCTTGTTTAGCCAAAGCATTTGGCTTTGCTGCCAACATGGTAGCCACTTCCCTCAACTCAAGAGATGAATTGATGGAGAATTACTCAAATGCTATGAGCCACTTGGAGAAGTTAGAGGAAAAGGGATGCACAATCTTGCATGAAGTTGATGTGCATACTATGAGCAGACACCCCTACCTTGCTTTCAATAGGAGTGCACGCAAAATGCTGAGTAGCCGTGGGCAAATTCATGTGACACACAAGACAACATATCCTTTTTCAAAGTGGGAAAAAGTGGACATAGCGAAGGACGCTGGGTTATATCTAGTTGAAGAAGAAACGTTCTTCCCCTGGCAGTATCCAGGCTATGTTAACAAGAGAGGATCTGGGAAATGCGATGAAACTTTTAGTGCTGGATCGGCCAACGCCTTCAAATTTGTCAAGTACAAGAGGTACTCGAGAATTGGTTGTCATGAGCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2431

Protein Analysis

186

Amino Acids

21.01

Weight (kDa)

8.95

Isoelectric Point (pI)

48.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BMT5-like PF10354 22 - 90 1.1e-20 rRNA (uridine-N3-)-methyltransferase BTM5-like
BMT5-like PF10354 93 - 152 2.7e-11 rRNA (uridine-N3-)-methyltransferase BTM5-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000364)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26485
fragaria_vesca FvH4_3g14860 FvH4_3g14860 FvH4_3g14861 FvH4_3g14862 FvH4_3g14862 FvH4_3g14880 FvH4_3g14880 FvH4_3g14890 FvH4_3g14891 FvH4_3g14892 FvH4_3g14901 FvH4_3g14902
malus_domestica MD05G1233500.v1.1 MD05G1233600.v1.1 MD10G1209900.v1.1 MD10G1210000.v1.1 MD10G1210100.v1.1 MD10G1210300.v1.1 MD10G1210400.v1.1
prunus_persica Prupe.4G132900_v2.0.a1 Prupe.4G133200_v2.0.a1 Prupe.4G133200_v2.0.a1 Prupe.4G133200_v2.0.a1 Prupe.4G133300_v2.0.a1 Prupe.4G133300_v2.0.a1 Prupe.4G133400_v2.0.a1 Prupe.4G133500_v2.0.a1 Prupe.4G133500_v2.0.a1 Prupe.4G133600_v2.0.a1 Prupe.4G133600_v2.0.a1
pyrus_communis pycom05g21110 pycom05g21120 pycom10g17840
rosa_chinensis RchiOBHm_Chr5g0024361 RchiOBHm_Chr5g0024391 RchiOBHm_Chr5g0024411 RchiOBHm_Chr5g0024431 RchiOBHm_Chr5g0024451 RchiOBHm_Chr5g0024461 RchiOBHm_Chr5g0024471 RchiOBHm_Chr5g0024481 RchiOBHm_Chr5g0024501 RchiOBHm_Chr5g0024511
rosa_laevigata RLG00000032799 RLG00000032800 RLG00000032801 RLG00000032802 RLG00000032803
rosa_multiflora Rmu_sc0000761.1_g000010 Rmu_sc0000761.1_g000014 Rmu_sc0000761.1_g000018 Rmu_sc0000761.1_g000025 Rmu_sc0005861.1_g000002 Rmu_sc0005861.1_g000004 Rmu_sc0005861.1_g000007 Rmu_sc0011809.1_g000001 Rmu_sc0011809.1_g000006
rosa_roxburghii Rroxscaffold_1G00054740 Rroxscaffold_1G00054750 Rroxscaffold_1G00054760 Rroxscaffold_1G00054770 Rroxscaffold_1G00054780 Rroxscaffold_1G00054790 Rroxscaffold_1G00054840 Rroxscaffold_1G00055860 Rroxscaffold_3G00237770 Rroxscaffold_6G00389330
rosa_rugosa Rorug05G0083300 Rorug05G0083400 Rorug05G0083400
rosa_samantha Rh5AG174100 Rh5AG174300 Rh5AG174600 Rh5AG174700 Rh5AG175000 Rh5AG175300 Rh5BG171000 Rh5BG171400 Rh5BG171500 Rh5BG171600 Rh5BG171700 Rh5BG172100 Rh5BG172300 Rh5BG172500 Rh5CG187400 Rh5CG187700 Rh5CG187900 Rh5CG188000 Rh5CG188200 Rh5CG188400 Rh5CG188500 Rh5CG188600 Rh5DG173200 Rh5DG173400 Rh5DG173500 Rh5DG173700 Rh5DG173900 Rh5DG174000 Rh5DG174100
rosa_wichuraiana Rw5G015700 Rw5G015730 Rw5G015740 Rw5G015770 Rw5G015790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 416
AclWI GGATC 2 cut(s) 466, 499
AcoI YGGCCR 1 cut(s) 495
AcsI RAATTY 2 cut(s) 321, 509
AfaI GTAC 2 cut(s) 521, 530
AgsI TTSAA 4 cut(s) 283, 357, 407, 508
AjnI CCWGG 2 cut(s) 425, 436
AjuI GAANNNNNNNTTGG 2 cut(s) 50, 82
AluBI AGCT 2 cut(s) 51, 553
AluI AGCT 2 cut(s) 51, 553
Alw21I GWGCWC 2 cut(s) 295, 555
Alw26I GTCTC 1 cut(s) 75
Alw44I GTGCAC 1 cut(s) 291
AlwI GGATC 2 cut(s) 466, 499
Ama87I CYCGRG 1 cut(s) 532
AoxI GGCC 1 cut(s) 495
ApaLI GTGCAC 1 cut(s) 291
ApeKI GCWGC 3 cut(s) 48, 95, 125
ApoI RAATTY 2 cut(s) 321, 509
ArsI GACNNNNNNTTYG 2 cut(s) 74, 106
AsuHPI GGTGA 1 cut(s) 86
AvaI CYCGRG 1 cut(s) 532
BaeGI GKGCMC 1 cut(s) 295
BanII GRGCYC 1 cut(s) 555
Bbv12I GWGCWC 2 cut(s) 295, 555
BbvI GCAGC 3 cut(s) 60, 82, 112
BccI CCATC 1 cut(s) 163
BceAI ACGGC 1 cut(s) 297
BciT130I CCWGG 2 cut(s) 427, 438
BciVI GTATCC 1 cut(s) 444
BcoDI GTCTC 1 cut(s) 75
BfaI CTAG 1 cut(s) 401
BfuI GTATCC 1 cut(s) 444
BisI GCNGC 3 cut(s) 49, 96, 126
BlsI GCNGC 3 cut(s) 50, 97, 127
Bme1390I CCNGG 2 cut(s) 427, 438
BmeT110I CYCGRG 1 cut(s) 532
BmrFI CCNGG 2 cut(s) 427, 438
BmsI GCATC 1 cut(s) 212
BplI GAGNNNNNCTC 2 cut(s) 164, 196
BpuEI CTTGAG 1 cut(s) 139
BsaJI CCNNGG 2 cut(s) 313, 425
BseBI CCWGG 2 cut(s) 427, 438
BseDI CCNNGG 2 cut(s) 313, 425
BseGI GGATG 1 cut(s) 227
BseMII CTCAG 2 cut(s) 68, 296
BseSI GKGCMC 1 cut(s) 295
BseXI GCAGC 3 cut(s) 60, 82, 112
BseYI CCCAGC 1 cut(s) 389
BshFI GGCC 1 cut(s) 497
BsiHKAI GWGCWC 2 cut(s) 295, 555
BsiHKCI CYCGRG 1 cut(s) 532
BsmAI GTCTC 1 cut(s) 75
BsnI GGCC 1 cut(s) 497
BsoBI CYCGRG 1 cut(s) 532
Bsp1286I GDGCHC 2 cut(s) 295, 555
Bsp143I GATC 2 cut(s) 458, 491
BspANI GGCC 1 cut(s) 497
BspCNI CTCAG 2 cut(s) 67, 297
BspHI TCATGA 1 cut(s) 547
BspPI GGATC 2 cut(s) 466, 499
BssECI CCNNGG 2 cut(s) 313, 425
BssMI GATC 2 cut(s) 458, 491
Bst2UI CCWGG 2 cut(s) 427, 438
Bst6I CTCTTC 1 cut(s) 18
BstC8I GCNNGC 1 cut(s) 295
BstDEI CTNAG 2 cut(s) 54, 305
BstDSI CCRYGG 1 cut(s) 313
BstF5I GGATG 1 cut(s) 227
BstKTI GATC 2 cut(s) 461, 494
BstMAI GTCTC 1 cut(s) 75
BstMBI GATC 2 cut(s) 458, 491
BstMWI GCNNNNNNNGC 3 cut(s) 104, 386, 494
BstNI CCWGG 2 cut(s) 427, 438
BstSCI CCNGG 2 cut(s) 425, 436
BstSLI GKGCMC 1 cut(s) 295
BstV1I GCAGC 3 cut(s) 60, 82, 112
BstX2I RGATCY 1 cut(s) 458
BstYI RGATCY 1 cut(s) 458
BsuI GTATCC 1 cut(s) 444
BsuRI GGCC 1 cut(s) 497
BtgI CCRYGG 1 cut(s) 313
BtgZI GCGATG 1 cut(s) 486
BtsCI GGATG 1 cut(s) 227
Cac8I GCNNGC 1 cut(s) 295
CciI TCATGA 1 cut(s) 547
CseI GACGC 1 cut(s) 395
Csp6I GTAC 2 cut(s) 520, 529
CviAII CATG 4 cut(s) 133, 236, 326, 548
CviJI RGCY 9 cut(s) 51, 107, 120, 140, 195, 312, 441, 497, 553
CviKI_1 RGCY 9 cut(s) 51, 107, 120, 140, 195, 312, 441, 497, 553
CviQI GTAC 2 cut(s) 520, 529
DdeI CTNAG 2 cut(s) 54, 305
DpnI GATC 2 cut(s) 460, 493
DpnII GATC 2 cut(s) 458, 491
EaeI YGGCCR 1 cut(s) 495
Eam1104I CTCTTC 1 cut(s) 18
EarI CTCTTC 1 cut(s) 18
Ecl136II GAGCTC 1 cut(s) 553
Eco24I GRGCYC 1 cut(s) 555
Eco53kI GAGCTC 1 cut(s) 553
Eco88I CYCGRG 1 cut(s) 532
EcoICRI GAGCTC 1 cut(s) 553
EcoRII CCWGG 2 cut(s) 425, 436
EcoT38I GRGCYC 1 cut(s) 555
FaeI CATG 4 cut(s) 136, 239, 329, 551
FatI CATG 4 cut(s) 132, 235, 325, 547
Fnu4HI GCNGC 3 cut(s) 49, 96, 126
FokI GGATG 1 cut(s) 234
FriOI GRGCYC 1 cut(s) 555
Fsp4HI GCNGC 3 cut(s) 49, 96, 126
FspBI CTAG 1 cut(s) 401
GluI GCNGC 3 cut(s) 49, 96, 126
GsaI CCCAGC 1 cut(s) 393
HaeIII GGCC 1 cut(s) 497
HgaI GACGC 1 cut(s) 395
Hin1II CATG 4 cut(s) 136, 239, 329, 551
HincII GTYRAC 1 cut(s) 448
HindII GTYRAC 1 cut(s) 448
HpaI GTTAAC 1 cut(s) 448
HphI GGTGA 1 cut(s) 86
Hpy166II GTNNAC 3 cut(s) 293, 373, 448
Hpy188I TCNGA 1 cut(s) 57
Hpy188III TCNNGA 3 cut(s) 156, 534, 548
Hpy8I GTNNAC 3 cut(s) 293, 373, 448
HpyAV CCTTC 2 cut(s) 376, 514
HpyCH4IV ACGT 1 cut(s) 416
HpyCH4V TGCA 5 cut(s) 40, 225, 235, 250, 293
HpyF10VI GCNNNNNNNGC 3 cut(s) 104, 386, 494
HpyF3I CTNAG 2 cut(s) 54, 305
HpySE526I ACGT 1 cut(s) 416
Hsp92II CATG 4 cut(s) 136, 239, 329, 551
KspAI GTTAAC 1 cut(s) 448
Kzo9I GATC 2 cut(s) 458, 491
LpnPI CCDG 7 cut(s) 375, 412, 423, 439, 447, 450, 474
Lsp1109I GCAGC 3 cut(s) 60, 82, 112
LweI GCATC 1 cut(s) 212
MaeI CTAG 1 cut(s) 401
MaeII ACGT 1 cut(s) 416
MaeIII GTNAC 1 cut(s) 328
MalI GATC 2 cut(s) 460, 493
MboI GATC 2 cut(s) 458, 491
MboII GAAGA 4 cut(s) 35, 412, 419, 422
MflI RGATCY 1 cut(s) 458
MhlI GDGCHC 2 cut(s) 295, 555
MluCI AATT 5 cut(s) 164, 175, 321, 509, 537
MnlI CCTC 5 cut(s) 70, 158, 205, 449, 519
MseI TTAA 1 cut(s) 447
MspR9I CCNGG 2 cut(s) 427, 438
MvaI CCWGG 2 cut(s) 427, 438
MwoI GCNNNNNNNGC 3 cut(s) 104, 386, 494
NdeII GATC 2 cut(s) 458, 491
NlaIII CATG 4 cut(s) 136, 239, 329, 551
NmuCI GTSAC 1 cut(s) 328
PaeR7I CTCGAG 1 cut(s) 532
PagI TCATGA 1 cut(s) 547
PkrI GCNGC 3 cut(s) 50, 97, 127
Psp124BI GAGCTC 1 cut(s) 555
Psp1406I AACGTT 1 cut(s) 416
Psp6I CCWGG 2 cut(s) 425, 436
PspFI CCCAGC 1 cut(s) 389
PspGI CCWGG 2 cut(s) 425, 436
PsuI RGATCY 1 cut(s) 458
RsaI GTAC 2 cut(s) 521, 530
RsaNI GTAC 2 cut(s) 520, 529
SacI GAGCTC 1 cut(s) 555
SaqAI TTAA 1 cut(s) 447
SatI GCNGC 3 cut(s) 49, 96, 126
Sau3AI GATC 2 cut(s) 458, 491
ScrFI CCNGG 2 cut(s) 427, 438
SduI GDGCHC 2 cut(s) 295, 555
SetI ASST 5 cut(s) 53, 276, 419, 530, 555
SfaNI GCATC 1 cut(s) 212
Sfr274I CTCGAG 1 cut(s) 532
SlaI CTCGAG 1 cut(s) 532
SmlI CTYRAG 2 cut(s) 154, 532
SmoI CTYRAG 2 cut(s) 154, 532
Sse9I AATT 5 cut(s) 164, 175, 321, 509, 537
SspI AATATT 1 cut(s) 63
SspMI CTAG 1 cut(s) 401
SstI GAGCTC 1 cut(s) 555
StyD4I CCNGG 2 cut(s) 425, 436
TaiI ACGT 1 cut(s) 419
TaqI TCGA 1 cut(s) 533
TasI AATT 5 cut(s) 164, 175, 321, 509, 537
TatI WGTACW 1 cut(s) 519
Tru1I TTAA 1 cut(s) 447
Tru9I TTAA 1 cut(s) 447
TseFI GTSAC 1 cut(s) 328
TseI GCWGC 3 cut(s) 48, 95, 125
Tsp45I GTSAC 1 cut(s) 328
TspDTI ATGAA 4 cut(s) 177, 252, 314, 489
VneI GTGCAC 1 cut(s) 291
XapI RAATTY 2 cut(s) 321, 509
XhoI CTCGAG 1 cut(s) 532
XspI CTAG 1 cut(s) 401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.