Rmu_sc0000761.1_g000025

At4g26485-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000761.1
OG0000364
Physical Location & Seq
Reverse (-)
102554 .. 109707
7154 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000761.1_g000025.1.cds

Sequence Viewer

Length: 1107 bp
atgagcaatgtgatggaattggagaacaggggatgcgtagtacttcatgaagtggatgtgcacagaatgagccaacacccttttctgagttgtattcggtttgatcgaataatctacaattttcctcatgccggttacttgcacggtcaatcatcatccgagcacaaccagtttcaaatttggttccatcaggatttggtgaggggattcttcaagaatgcgcgtgaaatgcttaccgaaataggagaaattcatgtgacacacaagacaacatatcctttcaatcgatgggaaatagttaagttagcagaagaggttgggttgtatttgcttcaggaagaaaagttctcgaaatgggattatccaggttatgaaaataagagaggagctgggttatgtgatcaaacttttcctgttggagaatgtagcaccttcaaatttgggaagctattgtaccattctaccccttccagttactatattgacttggttcgggcttacggtcaggattctcgaactaacggtccttacatgcaccactttactctggagttcagtgaagtagcaaccatgttggctgcagagccaaatgttgtggctaaacaagcagcaaaggaaaagtctcccgcacccaccaagaagcccgcctgcagccaagctttccctttggacacccaagctttccttttggacacccaagctttccttttggacacccacctagaagtaacctccaaaaaagacccgacccggctacttttccgagcccagctccgactgcaaccaaattccggcacaatccggcgctcctccagctcgattcttatctgcgccgtcttcccagttgctcacctgcagcctgctcccctgtacaaagcaccgccctctcctcccagcagcccacgatcccatcacggacgcatccagcccacagtgccttcgatctgcccagcgcagcccctgccaccgcgttgctgctcacctccgcctacagcccagaccggcctccacatccagatcggtgcacgaacagcagcgctcacccaacctcgctgcagactggccttcacatccacgcccggacaccgacgctcgtccacgacctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2431

Protein Analysis

368

Amino Acids

41.44

Weight (kDa)

9.04

Isoelectric Point (pI)

62.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000364)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26485
fragaria_vesca FvH4_3g14860 FvH4_3g14860 FvH4_3g14861 FvH4_3g14862 FvH4_3g14862 FvH4_3g14880 FvH4_3g14880 FvH4_3g14890 FvH4_3g14891 FvH4_3g14892 FvH4_3g14901 FvH4_3g14902
malus_domestica MD05G1233500.v1.1 MD05G1233600.v1.1 MD10G1209900.v1.1 MD10G1210000.v1.1 MD10G1210100.v1.1 MD10G1210300.v1.1 MD10G1210400.v1.1
prunus_persica Prupe.4G132900_v2.0.a1 Prupe.4G133200_v2.0.a1 Prupe.4G133200_v2.0.a1 Prupe.4G133200_v2.0.a1 Prupe.4G133300_v2.0.a1 Prupe.4G133300_v2.0.a1 Prupe.4G133400_v2.0.a1 Prupe.4G133500_v2.0.a1 Prupe.4G133500_v2.0.a1 Prupe.4G133600_v2.0.a1 Prupe.4G133600_v2.0.a1
pyrus_communis pycom05g21110 pycom05g21120 pycom10g17840
rosa_chinensis RchiOBHm_Chr5g0024361 RchiOBHm_Chr5g0024391 RchiOBHm_Chr5g0024411 RchiOBHm_Chr5g0024431 RchiOBHm_Chr5g0024451 RchiOBHm_Chr5g0024461 RchiOBHm_Chr5g0024471 RchiOBHm_Chr5g0024481 RchiOBHm_Chr5g0024501 RchiOBHm_Chr5g0024511
rosa_laevigata RLG00000032799 RLG00000032800 RLG00000032801 RLG00000032802 RLG00000032803
rosa_multiflora Rmu_sc0000761.1_g000010 Rmu_sc0000761.1_g000014 Rmu_sc0000761.1_g000018 Rmu_sc0000761.1_g000025 Rmu_sc0005861.1_g000002 Rmu_sc0005861.1_g000004 Rmu_sc0005861.1_g000007 Rmu_sc0011809.1_g000001 Rmu_sc0011809.1_g000006
rosa_roxburghii Rroxscaffold_1G00054740 Rroxscaffold_1G00054750 Rroxscaffold_1G00054760 Rroxscaffold_1G00054770 Rroxscaffold_1G00054780 Rroxscaffold_1G00054790 Rroxscaffold_1G00054840 Rroxscaffold_1G00055860 Rroxscaffold_3G00237770 Rroxscaffold_6G00389330
rosa_rugosa Rorug05G0083300 Rorug05G0083400 Rorug05G0083400
rosa_samantha Rh5AG174100 Rh5AG174300 Rh5AG174600 Rh5AG174700 Rh5AG175000 Rh5AG175300 Rh5BG171000 Rh5BG171400 Rh5BG171500 Rh5BG171600 Rh5BG171700 Rh5BG172100 Rh5BG172300 Rh5BG172500 Rh5CG187400 Rh5CG187700 Rh5CG187900 Rh5CG188000 Rh5CG188200 Rh5CG188400 Rh5CG188500 Rh5CG188600 Rh5DG173200 Rh5DG173400 Rh5DG173500 Rh5DG173700 Rh5DG173900 Rh5DG174000 Rh5DG174100
rosa_wichuraiana Rw5G015700 Rw5G015730 Rw5G015740 Rw5G015770 Rw5G015790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 861
Acc36I ACCTGC 1 cut(s) 861
AccII CGCG 2 cut(s) 223, 970
AciI CCGC 5 cut(s) 627, 645, 881, 968, 986
AclWI GGATC 1 cut(s) 900
AcsI RAATTY 4 cut(s) 177, 249, 437, 787
AcuI CTGAAG 1 cut(s) 317
AfaI GTAC 3 cut(s) 42, 455, 872
AfeI AGCGCT 1 cut(s) 1038
AfiI CCNNNNNNNGG 2 cut(s) 131, 791
AgsI TTSAA 4 cut(s) 176, 214, 283, 436
AjnI CCWGG 1 cut(s) 364
AjuI GAANNNNNNNTTGG 2 cut(s) 66, 98
AloI GAACNNNNNNTCC 4 cut(s) 329, 361, 508, 540
AluBI AGCT 7 cut(s) 389, 448, 659, 680, 701, 772, 816
AluI AGCT 7 cut(s) 389, 448, 659, 680, 701, 772, 816
Alw21I GWGCWC 3 cut(s) 63, 165, 1027
Alw26I GTCTC 1 cut(s) 627
Alw44I GTGCAC 2 cut(s) 59, 1023
AlwI GGATC 1 cut(s) 900
AlwNI CAGNNNCTG 1 cut(s) 961
Aor51HI AGCGCT 1 cut(s) 1038
AoxI GGCC 2 cut(s) 1003, 1062
ApaLI GTGCAC 2 cut(s) 59, 1023
ApeKI GCWGC 9 cut(s) 578, 608, 651, 856, 897, 955, 975, 1034, 1053
ApoI RAATTY 4 cut(s) 177, 249, 437, 787
ArsI GACNNNNNNTTYG 4 cut(s) 508, 540, 605, 637
AspLEI GCGC 5 cut(s) 223, 807, 833, 955, 1039
AspS9I GGNCC 1 cut(s) 524
AsuC2I CCSGG 2 cut(s) 751, 1080
AsuHPI GGTGA 4 cut(s) 211, 842, 972, 1033
AvaII GGWCC 1 cut(s) 524
BaeGI GKGCMC 2 cut(s) 63, 1027
BanII GRGCYC 1 cut(s) 769
BarI GAAGNNNNNNTAC 2 cut(s) 437, 469
BbsI GAAGAC 1 cut(s) 829
Bbv12I GWGCWC 3 cut(s) 63, 165, 1027
BbvI GCAGC 9 cut(s) 565, 620, 663, 868, 909, 962, 967, 1040, 1046
BccI CCATC 4 cut(s) 7, 195, 282, 918
BceAI ACGGC 1 cut(s) 818
BciT130I CCWGG 1 cut(s) 366
BclI TGATCA 1 cut(s) 400
BcnI CCSGG 2 cut(s) 751, 1080
BcoDI GTCTC 1 cut(s) 627
BfaI CTAG 1 cut(s) 722
BfmI CTRYAG 5 cut(s) 579, 649, 854, 990, 1054
BfoI RGCGCY 2 cut(s) 808, 1040
BfuAI ACCTGC 1 cut(s) 861
BisI GCNGC 9 cut(s) 579, 609, 652, 857, 898, 956, 976, 1035, 1054
BlsI GCNGC 9 cut(s) 580, 610, 653, 858, 899, 957, 977, 1036, 1055
BmcAI AGTACT 1 cut(s) 42
Bme1390I CCNGG 3 cut(s) 366, 751, 1080
Bme18I GGWCC 1 cut(s) 524
BmgT120I GGNCC 1 cut(s) 524
BmiI GGNNCC 1 cut(s) 185
BmrFI CCNGG 3 cut(s) 366, 751, 1080
BmrI ACTGGG 1 cut(s) 836
BmsI GCATC 2 cut(s) 23, 930
BmuI ACTGGG 1 cut(s) 836
BoxI GACNNNNGTC 1 cut(s) 1093
BpiI GAAGAC 1 cut(s) 829
BplI GAGNNNNNCTC 2 cut(s) 756, 788
BpmI CTGGAG 2 cut(s) 569, 796
BpuMI CCSGG 2 cut(s) 751, 1080
Bsa29I ATCGAT 1 cut(s) 286
BsaBI GATNNNNATC 1 cut(s) 824
Bsc4I CCNNNNNNNGG 2 cut(s) 131, 791
Bse118I RCCGGY 2 cut(s) 131, 1001
Bse1I ACTGG 4 cut(s) 169, 471, 842, 1065
Bse3DI GCAATG 1 cut(s) 13
Bse8I GATNNNNATC 1 cut(s) 824
BseBI CCWGG 1 cut(s) 366
BseCI ATCGAT 1 cut(s) 286
BseGI GGATG 6 cut(s) 38, 61, 155, 921, 1011, 1070
BseJI GATNNNNATC 1 cut(s) 824
BseLI CCNNNNNNNGG 2 cut(s) 131, 791
BseMI GCAATG 1 cut(s) 13
BseMII CTCAG 1 cut(s) 77
BseNI ACTGG 4 cut(s) 169, 471, 842, 1065
BseRI GAGGAG 3 cut(s) 399, 799, 879
BseSI GKGCMC 2 cut(s) 63, 1027
BseXI GCAGC 9 cut(s) 565, 620, 663, 868, 909, 962, 967, 1040, 1046
BseYI CCCAGC 4 cut(s) 389, 768, 893, 949
Bsh1236I CGCG 2 cut(s) 223, 970
BshFI GGCC 2 cut(s) 1005, 1064
BshVI ATCGAT 1 cut(s) 286
BsiHKAI GWGCWC 3 cut(s) 63, 165, 1027
BsiSI CCGG 6 cut(s) 132, 751, 792, 802, 1002, 1080
BslI CCNNNNNNNGG 2 cut(s) 131, 791
BsmAI GTCTC 1 cut(s) 627
BsmI GAATGC 1 cut(s) 223
BsnI GGCC 2 cut(s) 1005, 1064
Bsp1286I GDGCHC 4 cut(s) 63, 165, 769, 1027
Bsp1407I TGTACA 1 cut(s) 870
Bsp143I GATC 5 cut(s) 103, 400, 905, 942, 1017
BspACI CCGC 5 cut(s) 627, 645, 881, 968, 986
BspANI GGCC 2 cut(s) 1005, 1064
BspCNI CTCAG 1 cut(s) 78
BspDI ATCGAT 1 cut(s) 286
BspFNI CGCG 2 cut(s) 223, 970
BspHI TCATGA 1 cut(s) 46
BspLI GGNNCC 1 cut(s) 185
BspMAI CTGCAG 4 cut(s) 583, 653, 858, 1058
BspMI ACCTGC 1 cut(s) 861
BspPI GGATC 1 cut(s) 900
BsrDI GCAATG 1 cut(s) 13
BsrFI RCCGGY 2 cut(s) 131, 1001
BsrGI TGTACA 1 cut(s) 870
BsrI ACTGG 4 cut(s) 169, 471, 842, 1065
BssAI RCCGGY 2 cut(s) 131, 1001
BssMI GATC 5 cut(s) 103, 400, 905, 942, 1017
Bst2UI CCWGG 1 cut(s) 366
Bst4CI ACNGT 4 cut(s) 146, 503, 524, 934
Bst6I CTCTTC 1 cut(s) 306
BstAPI GCANNNNNTGC 1 cut(s) 961
BstAUI TGTACA 1 cut(s) 870
BstC8I GCNNGC 3 cut(s) 645, 649, 861
BstDEI CTNAG 1 cut(s) 86
BstF5I GGATG 6 cut(s) 38, 61, 155, 921, 1011, 1070
BstFNI CGCG 2 cut(s) 223, 970
BstH2I RGCGCY 2 cut(s) 808, 1040
BstHHI GCGC 5 cut(s) 223, 807, 833, 955, 1039
BstKTI GATC 5 cut(s) 106, 403, 908, 945, 1020
BstMAI GTCTC 1 cut(s) 627
BstMBI GATC 5 cut(s) 103, 400, 905, 942, 1017
BstMWI GCNNNNNNNGC 7 cut(s) 229, 605, 778, 813, 934, 961, 1031
BstNI CCWGG 1 cut(s) 366
BstNSI RCATGY 1 cut(s) 535
BstPAI GACNNNNGTC 1 cut(s) 1093
BstSCI CCNGG 3 cut(s) 364, 749, 1078
BstSFI CTRYAG 5 cut(s) 579, 649, 854, 990, 1054
BstSLI GKGCMC 2 cut(s) 63, 1027
BstUI CGCG 2 cut(s) 223, 970
BstV1I GCAGC 9 cut(s) 565, 620, 663, 868, 909, 962, 967, 1040, 1046
BstV2I GAAGAC 1 cut(s) 829
Bsu15I ATCGAT 1 cut(s) 286
BsuRI GGCC 2 cut(s) 1005, 1064
BsuTUI ATCGAT 1 cut(s) 286
BtsCI GGATG 6 cut(s) 38, 61, 155, 921, 1011, 1070
BtsIMutI CAGTG 2 cut(s) 562, 939
BveI ACCTGC 1 cut(s) 861
Cac8I GCNNGC 3 cut(s) 645, 649, 861
CaiI CAGNNNCTG 1 cut(s) 961
CciI TCATGA 1 cut(s) 46
CfoI GCGC 5 cut(s) 223, 807, 833, 955, 1039
Cfr10I RCCGGY 2 cut(s) 131, 1001
Cfr13I GGNCC 1 cut(s) 524
ClaI ATCGAT 1 cut(s) 286
CseI GACGC 2 cut(s) 927, 1098
Csp6I GTAC 3 cut(s) 41, 454, 871
CspCI CAANNNNNGTGG 2 cut(s) 576, 611
CviAII CATG 5 cut(s) 47, 128, 254, 532, 571
CviQI GTAC 3 cut(s) 41, 454, 871
DdeI CTNAG 1 cut(s) 86
DpnI GATC 5 cut(s) 105, 402, 907, 944, 1019
DpnII GATC 5 cut(s) 103, 400, 905, 942, 1017
Eam1104I CTCTTC 1 cut(s) 306
EarI CTCTTC 1 cut(s) 306
EciI GGCGGA 1 cut(s) 975
Eco24I GRGCYC 1 cut(s) 769
Eco47I GGWCC 1 cut(s) 524
Eco47III AGCGCT 1 cut(s) 1038
Eco57I CTGAAG 1 cut(s) 317
EcoRII CCWGG 1 cut(s) 364
EcoT38I GRGCYC 1 cut(s) 769
FaeI CATG 5 cut(s) 50, 131, 257, 535, 574
FaiI YATR 9 cut(s) 48, 129, 255, 274, 372, 397, 480, 533, 572
FalI AAGNNNNNCTT 4 cut(s) 669, 701, 690, 722
FatI CATG 5 cut(s) 46, 127, 253, 531, 570
FauI CCCGC 2 cut(s) 634, 652
FbaI TGATCA 1 cut(s) 400
Fnu4HI GCNGC 9 cut(s) 579, 609, 652, 857, 898, 956, 976, 1035, 1054
FokI GGATG 6 cut(s) 45, 68, 142, 908, 998, 1057
FriOI GRGCYC 1 cut(s) 769
Fsp4HI GCNGC 9 cut(s) 579, 609, 652, 857, 898, 956, 976, 1035, 1054
FspBI CTAG 1 cut(s) 722
GlaI GCGC 5 cut(s) 222, 806, 832, 954, 1038
GluI GCNGC 9 cut(s) 579, 609, 652, 857, 898, 956, 976, 1035, 1054
GsaI CCCAGC 4 cut(s) 393, 772, 897, 953
GsuI CTGGAG 2 cut(s) 569, 796
HaeII RGCGCY 2 cut(s) 808, 1040
HaeIII GGCC 2 cut(s) 1005, 1064
HapII CCGG 6 cut(s) 132, 751, 792, 802, 1002, 1080
HgaI GACGC 2 cut(s) 927, 1098
HhaI GCGC 5 cut(s) 223, 807, 833, 955, 1039
Hin1II CATG 5 cut(s) 50, 131, 257, 535, 574
Hin6I GCGC 5 cut(s) 221, 805, 831, 953, 1037
HinP1I GCGC 5 cut(s) 221, 805, 831, 953, 1037
HindIII AAGCTT 3 cut(s) 657, 678, 699
HinfI GANTC 3 cut(s) 207, 509, 820
HpaII CCGG 6 cut(s) 132, 751, 792, 802, 1002, 1080
HphI GGTGA 4 cut(s) 211, 842, 972, 1033
Hpy166II GTNNAC 3 cut(s) 61, 1025, 1098
Hpy188I TCNGA 4 cut(s) 87, 160, 764, 776
Hpy188III TCNNGA 9 cut(s) 47, 191, 214, 335, 349, 506, 513, 548, 1015
Hpy8I GTNNAC 3 cut(s) 61, 1025, 1098
Hpy99I CGWCG 1 cut(s) 1092
HpyAV CCTTC 4 cut(s) 442, 477, 948, 1075
HpyCH4III ACNGT 4 cut(s) 146, 503, 524, 934
HpyCH4V TGCA 9 cut(s) 61, 142, 535, 581, 651, 781, 856, 1025, 1056
HpyF10VI GCNNNNNNNGC 7 cut(s) 229, 605, 778, 813, 934, 961, 1031
HpyF3I CTNAG 1 cut(s) 86
Hsp92II CATG 5 cut(s) 50, 131, 257, 535, 574
HspAI GCGC 5 cut(s) 221, 805, 831, 953, 1037
Ksp22I TGATCA 1 cut(s) 400
Kzo9I GATC 5 cut(s) 103, 400, 905, 942, 1017
LmnI GCTCC 4 cut(s) 386, 777, 812, 868
Lsp1109I GCAGC 9 cut(s) 565, 620, 663, 868, 909, 962, 967, 1040, 1046
LweI GCATC 2 cut(s) 23, 930
MaeI CTAG 1 cut(s) 722
MaeIII GTNAC 4 cut(s) 134, 256, 473, 727
MalI GATC 5 cut(s) 105, 402, 907, 944, 1019
MboI GATC 5 cut(s) 103, 400, 905, 942, 1017
MboII GAAGA 4 cut(s) 202, 323, 350, 829
MhlI GDGCHC 4 cut(s) 63, 165, 769, 1027
MluCI AATT 6 cut(s) 17, 118, 177, 249, 437, 787
MmeI TCCRAC 2 cut(s) 397, 799
MseI TTAA 1 cut(s) 300
MspI CCGG 6 cut(s) 132, 751, 792, 802, 1002, 1080
MspR9I CCNGG 3 cut(s) 366, 751, 1080
Mva1269I GAATGC 1 cut(s) 223
MvaI CCWGG 1 cut(s) 366
MvnI CGCG 2 cut(s) 223, 970
MwoI GCNNNNNNNGC 7 cut(s) 229, 605, 778, 813, 934, 961, 1031
NciI CCSGG 2 cut(s) 751, 1080
NdeII GATC 5 cut(s) 103, 400, 905, 942, 1017
NlaIII CATG 5 cut(s) 50, 131, 257, 535, 574
NlaIV GGNNCC 1 cut(s) 185
NmuCI GTSAC 1 cut(s) 256
NspI RCATGY 1 cut(s) 535
PagI TCATGA 1 cut(s) 46
PaqCI CACCTGC 1 cut(s) 861
PcsI WCGNNNNNNNCGW 1 cut(s) 103
PctI GAATGC 1 cut(s) 223
PfeI GAWTC 3 cut(s) 207, 509, 820
PkrI GCNGC 9 cut(s) 580, 610, 653, 858, 899, 957, 977, 1036, 1055
PshAI GACNNNNGTC 1 cut(s) 1093
Psp6I CCWGG 1 cut(s) 364
PspFI CCCAGC 4 cut(s) 389, 768, 893, 949
PspGI CCWGG 1 cut(s) 364
PspN4I GGNNCC 1 cut(s) 185
PspPI GGNCC 1 cut(s) 524
PstI CTGCAG 4 cut(s) 583, 653, 858, 1058
PstNI CAGNNNCTG 1 cut(s) 961
RsaI GTAC 3 cut(s) 42, 455, 872
RsaNI GTAC 3 cut(s) 41, 454, 871
SaqAI TTAA 1 cut(s) 300
SatI GCNGC 9 cut(s) 579, 609, 652, 857, 898, 956, 976, 1035, 1054
Sau3AI GATC 5 cut(s) 103, 400, 905, 942, 1017
Sau96I GGNCC 1 cut(s) 524
ScaI AGTACT 1 cut(s) 42
ScrFI CCNGG 3 cut(s) 366, 751, 1080
SduI GDGCHC 4 cut(s) 63, 165, 769, 1027
SfaNI GCATC 2 cut(s) 23, 930
SfcI CTRYAG 5 cut(s) 579, 649, 854, 990, 1054
SinI GGWCC 1 cut(s) 524
Sse9I AATT 6 cut(s) 17, 118, 177, 249, 437, 787
SsiI CCGC 5 cut(s) 627, 645, 881, 968, 986
SspMI CTAG 1 cut(s) 722
StyD4I CCNGG 3 cut(s) 364, 749, 1078
TaaI ACNGT 4 cut(s) 146, 503, 524, 934
TaqI TCGA 6 cut(s) 106, 286, 350, 514, 818, 941
TasI AATT 6 cut(s) 17, 118, 177, 249, 437, 787
TatI WGTACW 2 cut(s) 40, 870
TfiI GAWTC 3 cut(s) 207, 509, 820
Tru1I TTAA 1 cut(s) 300
Tru9I TTAA 1 cut(s) 300
TscAI CASTG 2 cut(s) 562, 939
TseFI GTSAC 1 cut(s) 256
TseI GCWGC 9 cut(s) 578, 608, 651, 856, 897, 955, 975, 1034, 1053
Tsp45I GTSAC 1 cut(s) 256
TspDTI ATGAA 4 cut(s) 35, 63, 242, 387
TspGWI ACGGA 1 cut(s) 930
TspRI CASTG 2 cut(s) 562, 939
VneI GTGCAC 2 cut(s) 59, 1023
VpaK11BI GGWCC 1 cut(s) 524
XapI RAATTY 4 cut(s) 177, 249, 437, 787
XceI RCATGY 1 cut(s) 535
XspI CTAG 1 cut(s) 722
ZrmI AGTACT 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.