Prupe.4G133300_v2.0.a1

At4g26485-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000364
Physical Location & Seq
Forward (+)
7383639 .. 7386118
2480 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G133300.1

Sequence Viewer

Length: 978 bp
ATGGAAGTGTTTAGCTTTGAGAAAAAGATTAAGCATTACAGCAGCTATCAGAAGATACTCTTAGCCGGAGAAGGAGACTTCTCTTTTTCTGTTTGCTTAGCTAGAGCTTTTGGCTTGGCTGTCAACATGGTTGCGACTTCTCTCGACTCCAGAGAGTCTTTGATGCTGAATTATTCAAAAGCTATGAGCAATGTGAAGGAGTTAGAGGCCAGGGGATGCAAAGTATTGCATGAGGTGGATGTCCACAGCATGAGCCAACACCCTTTCTTGATTAGGGTATGCTTTGATCGCATAATCTATAATTTTCCTCACGCCGGTTTCTTTTCTTCTGAACGCAACAGGTTACAAATTTGGTTTCATCGGGATTTGGTCAGGGGATTCCTCAAGAATGCATGCGAAATGCTGACTGCTATAGGAGAAATTCATGTGACACACAAGACAACATTTCCTTTCAGTGAATGGAAAATAGTGGAGTTAGCAAAAGAGGTTGGGTTATATCTGGTTGATGAAGAACAGTTCTCACTATTGGATTATCCAGGTTATGAAAATAAGAGAGGAGCTGGGATGTGTGATAAAACTTTTCATGTTGGAATGTGTAGCACCTTCAAATTTGCCAAGCTGTTGTACAGTTCTACCACTTCATGGTCTGGATGTTCTGGAATTAATGGTCCTCACATGCAACGGTTGCATCAGAATTTTGTGATGGGATACTTGAATAGTTCCAGTGAGATGCACAGGGCTTCATATCCTTTCAGTGACTGGGAAATGGAGAAGTTAACAAAAGAGGTTGGCTTGTTTTTGGTTAAAGAAGAAGAGTTCTCACCATGGGACTGTTCATGTGCTGCTTCCAGTTTCCACCCTGGTACTTTGACCATTAGTTTATGGTCAGTTGACATAGTAGATATGGCTTGTTCTTATTTAGAGAGCTTGGAAAGGAAGAAGCCAAAGCATGGCCACAAGAATTTGAGACCTCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2431

Protein Analysis

326

Amino Acids

37.22

Weight (kDa)

6.94

Isoelectric Point (pI)

35.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000364)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26485
fragaria_vesca FvH4_3g14860 FvH4_3g14860 FvH4_3g14861 FvH4_3g14862 FvH4_3g14862 FvH4_3g14880 FvH4_3g14880 FvH4_3g14890 FvH4_3g14891 FvH4_3g14892 FvH4_3g14901 FvH4_3g14902
malus_domestica MD05G1233500.v1.1 MD05G1233600.v1.1 MD10G1209900.v1.1 MD10G1210000.v1.1 MD10G1210100.v1.1 MD10G1210300.v1.1 MD10G1210400.v1.1
prunus_persica Prupe.4G132900_v2.0.a1 Prupe.4G133200_v2.0.a1 Prupe.4G133200_v2.0.a1 Prupe.4G133200_v2.0.a1 Prupe.4G133300_v2.0.a1 Prupe.4G133300_v2.0.a1 Prupe.4G133400_v2.0.a1 Prupe.4G133500_v2.0.a1 Prupe.4G133500_v2.0.a1 Prupe.4G133600_v2.0.a1 Prupe.4G133600_v2.0.a1
pyrus_communis pycom05g21110 pycom05g21120 pycom10g17840
rosa_chinensis RchiOBHm_Chr5g0024361 RchiOBHm_Chr5g0024391 RchiOBHm_Chr5g0024411 RchiOBHm_Chr5g0024431 RchiOBHm_Chr5g0024451 RchiOBHm_Chr5g0024461 RchiOBHm_Chr5g0024471 RchiOBHm_Chr5g0024481 RchiOBHm_Chr5g0024501 RchiOBHm_Chr5g0024511
rosa_laevigata RLG00000032799 RLG00000032800 RLG00000032801 RLG00000032802 RLG00000032803
rosa_multiflora Rmu_sc0000761.1_g000010 Rmu_sc0000761.1_g000014 Rmu_sc0000761.1_g000018 Rmu_sc0000761.1_g000025 Rmu_sc0005861.1_g000002 Rmu_sc0005861.1_g000004 Rmu_sc0005861.1_g000007 Rmu_sc0011809.1_g000001 Rmu_sc0011809.1_g000006
rosa_roxburghii Rroxscaffold_1G00054740 Rroxscaffold_1G00054750 Rroxscaffold_1G00054760 Rroxscaffold_1G00054770 Rroxscaffold_1G00054780 Rroxscaffold_1G00054790 Rroxscaffold_1G00054840 Rroxscaffold_1G00055860 Rroxscaffold_3G00237770 Rroxscaffold_6G00389330
rosa_rugosa Rorug05G0083300 Rorug05G0083400 Rorug05G0083400
rosa_samantha Rh5AG174100 Rh5AG174300 Rh5AG174600 Rh5AG174700 Rh5AG175000 Rh5AG175300 Rh5BG171000 Rh5BG171400 Rh5BG171500 Rh5BG171600 Rh5BG171700 Rh5BG172100 Rh5BG172300 Rh5BG172500 Rh5CG187400 Rh5CG187700 Rh5CG187900 Rh5CG188000 Rh5CG188200 Rh5CG188400 Rh5CG188500 Rh5CG188600 Rh5DG173200 Rh5DG173400 Rh5DG173500 Rh5DG173700 Rh5DG173900 Rh5DG174000 Rh5DG174100
rosa_wichuraiana Rw5G015700 Rw5G015730 Rw5G015740 Rw5G015770 Rw5G015790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 642, 950
AcoI YGGCCR 1 cut(s) 952
AcsI RAATTY 5 cut(s) 348, 420, 608, 694, 961
AfaI GTAC 2 cut(s) 626, 865
AfiI CCNNNNNNNGG 3 cut(s) 314, 642, 950
AgsI TTSAA 3 cut(s) 177, 607, 715
AjnI CCWGG 3 cut(s) 209, 535, 859
AluBI AGCT 8 cut(s) 15, 45, 101, 107, 182, 560, 619, 927
AluI AGCT 8 cut(s) 15, 45, 101, 107, 182, 560, 619, 927
Alw26I GTCTC 2 cut(s) 69, 961
AlwNI CAGNNNCTG 1 cut(s) 759
AoxI GGCC 2 cut(s) 207, 952
ApeKI GCWGC 2 cut(s) 42, 842
ApoI RAATTY 5 cut(s) 348, 420, 608, 694, 961
AseI ATTAAT 1 cut(s) 663
AspS9I GGNCC 1 cut(s) 668
AsuHPI GGTGA 1 cut(s) 813
AvaII GGWCC 1 cut(s) 668
BalI TGGCCA 1 cut(s) 954
BbvI GCAGC 2 cut(s) 54, 829
BccI CCATC 1 cut(s) 697
BciT130I CCWGG 3 cut(s) 211, 537, 861
BciVI GTATCC 1 cut(s) 701
BcoDI GTCTC 2 cut(s) 69, 961
BfaI CTAG 1 cut(s) 102
BfmI CTRYAG 1 cut(s) 411
BfuI GTATCC 1 cut(s) 701
BisI GCNGC 2 cut(s) 43, 843
BlpI GCTNAGC 1 cut(s) 97
BlsI GCNGC 2 cut(s) 44, 844
Bme1390I CCNGG 3 cut(s) 211, 537, 861
Bme18I GGWCC 1 cut(s) 668
BmgT120I GGNCC 1 cut(s) 668
BmrFI CCNGG 3 cut(s) 211, 537, 861
BmrI ACTGGG 1 cut(s) 769
BmsI GCATC 4 cut(s) 153, 206, 697, 720
BmuI ACTGGG 1 cut(s) 769
BpmI CTGGAG 1 cut(s) 133
Bpu1102I GCTNAGC 1 cut(s) 97
BpuEI CTTGAG 1 cut(s) 368
BsaI GGTCTC 1 cut(s) 961
BsaJI CCNNGG 3 cut(s) 210, 824, 859
Bsc4I CCNNNNNNNGG 3 cut(s) 314, 642, 950
Bse118I RCCGGY 1 cut(s) 314
Bse1I ACTGG 3 cut(s) 723, 764, 849
Bse3DI GCAATG 1 cut(s) 196
BseBI CCWGG 3 cut(s) 211, 537, 861
BseDI CCNNGG 3 cut(s) 210, 824, 859
BseGI GGATG 4 cut(s) 221, 244, 570, 656
BseLI CCNNNNNNNGG 3 cut(s) 314, 642, 950
BseMI GCAATG 1 cut(s) 196
BseNI ACTGG 3 cut(s) 723, 764, 849
BseRI GAGGAG 1 cut(s) 570
BseXI GCAGC 2 cut(s) 54, 829
BseYI CCCAGC 1 cut(s) 560
BshFI GGCC 2 cut(s) 209, 954
BsiSI CCGG 2 cut(s) 66, 315
BslFI GGGAC 1 cut(s) 842
BslI CCNNNNNNNGG 3 cut(s) 314, 642, 950
BsmAI GTCTC 2 cut(s) 69, 961
BsmFI GGGAC 1 cut(s) 842
BsmI GAATGC 1 cut(s) 394
BsnI GGCC 2 cut(s) 209, 954
Bso31I GGTCTC 1 cut(s) 961
Bsp1407I TGTACA 1 cut(s) 624
Bsp143I GATC 1 cut(s) 286
Bsp1720I GCTNAGC 1 cut(s) 97
Bsp19I CCATGG 1 cut(s) 824
BspANI GGCC 2 cut(s) 209, 954
BspTNI GGTCTC 1 cut(s) 961
BsrDI GCAATG 1 cut(s) 196
BsrFI RCCGGY 1 cut(s) 314
BsrGI TGTACA 1 cut(s) 624
BsrI ACTGG 3 cut(s) 723, 764, 849
BssAI RCCGGY 1 cut(s) 314
BssECI CCNNGG 3 cut(s) 210, 824, 859
BssMI GATC 1 cut(s) 286
BssT1I CCWWGG 1 cut(s) 824
Bst2UI CCWGG 3 cut(s) 211, 537, 861
Bst4CI ACNGT 4 cut(s) 516, 629, 684, 833
Bst6I CTCTTC 1 cut(s) 807
BstAPI GCANNNNNTGC 1 cut(s) 685
BstAUI TGTACA 1 cut(s) 624
BstC8I GCNNGC 1 cut(s) 394
BstDEI CTNAG 2 cut(s) 61, 97
BstDSI CCRYGG 1 cut(s) 824
BstF5I GGATG 4 cut(s) 221, 244, 570, 656
BstKTI GATC 1 cut(s) 289
BstMAI GTCTC 2 cut(s) 69, 961
BstMBI GATC 1 cut(s) 286
BstMWI GCNNNNNNNGC 2 cut(s) 288, 685
BstNI CCWGG 3 cut(s) 211, 537, 861
BstNSI RCATGY 2 cut(s) 396, 679
BstSCI CCNGG 3 cut(s) 209, 535, 859
BstSFI CTRYAG 1 cut(s) 411
BstV1I GCAGC 2 cut(s) 54, 829
BsuI GTATCC 1 cut(s) 701
BsuRI GGCC 2 cut(s) 209, 954
BtgI CCRYGG 1 cut(s) 824
BtsCI GGATG 4 cut(s) 221, 244, 570, 656
BtsIMutI CAGTG 3 cut(s) 460, 730, 760
Cac8I GCNNGC 1 cut(s) 394
CaiI CAGNNNCTG 1 cut(s) 759
Cfr10I RCCGGY 1 cut(s) 314
Cfr13I GGNCC 1 cut(s) 668
Csp6I GTAC 2 cut(s) 625, 864
CviQI GTAC 2 cut(s) 625, 864
DdeI CTNAG 2 cut(s) 61, 97
DpnI GATC 1 cut(s) 288
DpnII GATC 1 cut(s) 286
EaeI YGGCCR 1 cut(s) 952
Eam1104I CTCTTC 1 cut(s) 807
EarI CTCTTC 1 cut(s) 807
Eco130I CCWWGG 1 cut(s) 824
Eco31I GGTCTC 1 cut(s) 961
Eco47I GGWCC 1 cut(s) 668
EcoRII CCWGG 3 cut(s) 209, 535, 859
EcoT14I CCWWGG 1 cut(s) 824
EcoT22I ATGCAT 1 cut(s) 394
ErhI CCWWGG 1 cut(s) 824
FalI AAGNNNNNCTT 2 cut(s) 44, 76
FaqI GGGAC 1 cut(s) 842
Fnu4HI GCNGC 2 cut(s) 43, 843
FokI GGATG 4 cut(s) 228, 251, 577, 663
Fsp4HI GCNGC 2 cut(s) 43, 843
FspBI CTAG 1 cut(s) 102
GluI GCNGC 2 cut(s) 43, 843
GsaI CCCAGC 1 cut(s) 564
GsuI CTGGAG 1 cut(s) 133
HaeIII GGCC 2 cut(s) 209, 954
HapII CCGG 2 cut(s) 66, 315
HincII GTYRAC 3 cut(s) 124, 777, 892
HindII GTYRAC 3 cut(s) 124, 777, 892
HinfI GANTC 3 cut(s) 146, 155, 378
HpaI GTTAAC 1 cut(s) 777
HpaII CCGG 2 cut(s) 66, 315
HphI GGTGA 1 cut(s) 813
Hpy166II GTNNAC 4 cut(s) 124, 244, 777, 892
Hpy188I TCNGA 3 cut(s) 51, 331, 693
Hpy188III TCNNGA 7 cut(s) 143, 150, 268, 362, 385, 648, 657
Hpy8I GTNNAC 4 cut(s) 124, 244, 777, 892
HpyAV CCTTC 3 cut(s) 65, 190, 613
HpyCH4III ACNGT 4 cut(s) 516, 629, 684, 833
HpyCH4V TGCA 6 cut(s) 219, 229, 392, 679, 688, 733
HpyF10VI GCNNNNNNNGC 2 cut(s) 288, 685
HpyF3I CTNAG 2 cut(s) 61, 97
KspAI GTTAAC 1 cut(s) 777
Kzo9I GATC 1 cut(s) 286
LmnI GCTCC 1 cut(s) 557
Lsp1109I GCAGC 2 cut(s) 54, 829
LweI GCATC 4 cut(s) 153, 206, 697, 720
MaeI CTAG 1 cut(s) 102
MaeIII GTNAC 3 cut(s) 342, 427, 755
MalI GATC 1 cut(s) 288
MboI GATC 1 cut(s) 286
MboII GAAGA 6 cut(s) 64, 318, 521, 821, 824, 949
MlsI TGGCCA 1 cut(s) 954
MluCI AATT 8 cut(s) 169, 301, 348, 420, 608, 660, 694, 961
MluNI TGGCCA 1 cut(s) 954
MlyI GAGTC 2 cut(s) 140, 164
MmeI TCCRAC 1 cut(s) 568
MnlI CCTC 8 cut(s) 199, 226, 318, 392, 478, 548, 681, 778
Mox20I TGGCCA 1 cut(s) 954
Mph1103I ATGCAT 1 cut(s) 394
MscI TGGCCA 1 cut(s) 954
MseI TTAA 4 cut(s) 30, 663, 776, 804
Msp20I TGGCCA 1 cut(s) 954
MspI CCGG 2 cut(s) 66, 315
MspR9I CCNGG 3 cut(s) 211, 537, 861
Mva1269I GAATGC 1 cut(s) 394
MvaI CCWGG 3 cut(s) 211, 537, 861
MwoI GCNNNNNNNGC 2 cut(s) 288, 685
NcoI CCATGG 1 cut(s) 824
NdeII GATC 1 cut(s) 286
NmuCI GTSAC 2 cut(s) 427, 755
NsiI ATGCAT 1 cut(s) 394
NspI RCATGY 2 cut(s) 396, 679
PaeI GCATGC 1 cut(s) 396
PctI GAATGC 1 cut(s) 394
PfeI GAWTC 1 cut(s) 378
PflMI CCANNNNNTGG 2 cut(s) 642, 950
PkrI GCNGC 2 cut(s) 44, 844
PleI GAGTC 2 cut(s) 140, 163
PpsI GAGTC 2 cut(s) 140, 163
PshBI ATTAAT 1 cut(s) 663
Psp6I CCWGG 3 cut(s) 209, 535, 859
PspFI CCCAGC 1 cut(s) 560
PspGI CCWGG 3 cut(s) 209, 535, 859
PspPI GGNCC 1 cut(s) 668
PstNI CAGNNNCTG 1 cut(s) 759
RsaI GTAC 2 cut(s) 626, 865
RsaNI GTAC 2 cut(s) 625, 864
SaqAI TTAA 4 cut(s) 30, 663, 776, 804
SatI GCNGC 2 cut(s) 43, 843
Sau3AI GATC 1 cut(s) 286
Sau96I GGNCC 1 cut(s) 668
SchI GAGTC 2 cut(s) 140, 164
ScrFI CCNGG 3 cut(s) 211, 537, 861
SfaNI GCATC 4 cut(s) 153, 206, 697, 720
SfcI CTRYAG 1 cut(s) 411
SinI GGWCC 1 cut(s) 668
SmlI CTYRAG 1 cut(s) 383
SmoI CTYRAG 1 cut(s) 383
SphI GCATGC 1 cut(s) 396
Sse9I AATT 8 cut(s) 169, 301, 348, 420, 608, 660, 694, 961
SspMI CTAG 1 cut(s) 102
StyD4I CCNGG 3 cut(s) 209, 535, 859
StyI CCWWGG 1 cut(s) 824
TaaI ACNGT 4 cut(s) 516, 629, 684, 833
TaqI TCGA 1 cut(s) 144
TasI AATT 8 cut(s) 169, 301, 348, 420, 608, 660, 694, 961
TatI WGTACW 1 cut(s) 624
TfiI GAWTC 1 cut(s) 378
Tru1I TTAA 4 cut(s) 30, 663, 776, 804
Tru9I TTAA 4 cut(s) 30, 663, 776, 804
TscAI CASTG 3 cut(s) 460, 730, 760
TseFI GTSAC 2 cut(s) 427, 755
TseI GCWGC 2 cut(s) 42, 842
Tsp45I GTSAC 2 cut(s) 427, 755
TspDTI ATGAA 8 cut(s) 347, 413, 522, 558, 572, 630, 732, 825
TspRI CASTG 3 cut(s) 460, 730, 760
Van91I CCANNNNNTGG 2 cut(s) 642, 950
VpaK11BI GGWCC 1 cut(s) 668
VspI ATTAAT 1 cut(s) 663
XapI RAATTY 5 cut(s) 348, 420, 608, 694, 961
XceI RCATGY 2 cut(s) 396, 679
XspI CTAG 1 cut(s) 102
Zsp2I ATGCAT 1 cut(s) 394
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.