RchiOBHm_Chr5g0024481

At4g26485-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000364
Physical Location & Seq
Reverse (-)
18636531 .. 18637020
490 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30423

Sequence Viewer

Length: 408 bp
ATGGAGTTAGATGTGCATACTATGAACCAACACCCCCAACTTATTTACAGGAGGTTTGATTGTACAATCTATAATTTTCCTCATGCAGGTTACTTGAGAGGTTCTTTTTCATCAGAAAGCGATAAATCTCAAATTCTTGCACATAAGAACTTGGTCAAGGGATACTTCATGAGTGCACATCAAATGCTGTGTAGCCGTGGACAAATTCATGTGACACACAAGACAAAATTTCCTTTTACAGAGTGGGAAATAGTGAATTTGGCAAAGGTGGCTGGGTTATATCTGGTTGAAGAAGAAACATTCTACCCATGGCAATATCCAGGTTACGTAAATAAACGAGGAGCTGGGAACTGCGATGAAAGCTTTAGACTTGGAATGTCTAGCACCTTCAAATTTGCTAAGTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2431

Protein Analysis

135

Amino Acids

15.76

Weight (kDa)

8.75

Isoelectric Point (pI)

49.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BMT5-like PF10354 2 - 113 1.7e-25 rRNA (uridine-N3-)-methyltransferase BTM5-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000364)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26485
fragaria_vesca FvH4_3g14860 FvH4_3g14860 FvH4_3g14861 FvH4_3g14862 FvH4_3g14862 FvH4_3g14880 FvH4_3g14880 FvH4_3g14890 FvH4_3g14891 FvH4_3g14892 FvH4_3g14901 FvH4_3g14902
malus_domestica MD05G1233500.v1.1 MD05G1233600.v1.1 MD10G1209900.v1.1 MD10G1210000.v1.1 MD10G1210100.v1.1 MD10G1210300.v1.1 MD10G1210400.v1.1
prunus_persica Prupe.4G132900_v2.0.a1 Prupe.4G133200_v2.0.a1 Prupe.4G133200_v2.0.a1 Prupe.4G133200_v2.0.a1 Prupe.4G133300_v2.0.a1 Prupe.4G133300_v2.0.a1 Prupe.4G133400_v2.0.a1 Prupe.4G133500_v2.0.a1 Prupe.4G133500_v2.0.a1 Prupe.4G133600_v2.0.a1 Prupe.4G133600_v2.0.a1
pyrus_communis pycom05g21110 pycom05g21120 pycom10g17840
rosa_chinensis RchiOBHm_Chr5g0024361 RchiOBHm_Chr5g0024391 RchiOBHm_Chr5g0024411 RchiOBHm_Chr5g0024431 RchiOBHm_Chr5g0024451 RchiOBHm_Chr5g0024461 RchiOBHm_Chr5g0024471 RchiOBHm_Chr5g0024481 RchiOBHm_Chr5g0024501 RchiOBHm_Chr5g0024511
rosa_laevigata RLG00000032799 RLG00000032800 RLG00000032801 RLG00000032802 RLG00000032803
rosa_multiflora Rmu_sc0000761.1_g000010 Rmu_sc0000761.1_g000014 Rmu_sc0000761.1_g000018 Rmu_sc0000761.1_g000025 Rmu_sc0005861.1_g000002 Rmu_sc0005861.1_g000004 Rmu_sc0005861.1_g000007 Rmu_sc0011809.1_g000001 Rmu_sc0011809.1_g000006
rosa_roxburghii Rroxscaffold_1G00054740 Rroxscaffold_1G00054750 Rroxscaffold_1G00054760 Rroxscaffold_1G00054770 Rroxscaffold_1G00054780 Rroxscaffold_1G00054790 Rroxscaffold_1G00054840 Rroxscaffold_1G00055860 Rroxscaffold_3G00237770 Rroxscaffold_6G00389330
rosa_rugosa Rorug05G0083300 Rorug05G0083400 Rorug05G0083400
rosa_samantha Rh5AG174100 Rh5AG174300 Rh5AG174600 Rh5AG174700 Rh5AG175000 Rh5AG175300 Rh5BG171000 Rh5BG171400 Rh5BG171500 Rh5BG171600 Rh5BG171700 Rh5BG172100 Rh5BG172300 Rh5BG172500 Rh5CG187400 Rh5CG187700 Rh5CG187900 Rh5CG188000 Rh5CG188200 Rh5CG188400 Rh5CG188500 Rh5CG188600 Rh5DG173200 Rh5DG173400 Rh5DG173500 Rh5DG173700 Rh5DG173900 Rh5DG174000 Rh5DG174100
rosa_wichuraiana Rw5G015700 Rw5G015730 Rw5G015740 Rw5G015770 Rw5G015790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 77
AcsI RAATTY 5 cut(s) 132, 204, 227, 256, 392
AfaI GTAC 2 cut(s) 64, 404
AfiI CCNNNNNNNGG 1 cut(s) 86
AgsI TTSAA 2 cut(s) 290, 391
AjnI CCWGG 1 cut(s) 319
AluBI AGCT 2 cut(s) 344, 363
AluI AGCT 2 cut(s) 344, 363
Alw21I GWGCWC 1 cut(s) 178
Alw44I GTGCAC 1 cut(s) 174
ApaLI GTGCAC 1 cut(s) 174
ApoI RAATTY 5 cut(s) 132, 204, 227, 256, 392
BaeGI GKGCMC 1 cut(s) 178
Bbv12I GWGCWC 1 cut(s) 178
BceAI ACGGC 1 cut(s) 180
BciT130I CCWGG 1 cut(s) 321
BciVI GTATCC 1 cut(s) 155
BfaI CTAG 2 cut(s) 381, 406
BfuAI ACCTGC 1 cut(s) 77
BfuI GTATCC 1 cut(s) 155
BmcAI AGTACT 1 cut(s) 404
Bme1390I CCNGG 1 cut(s) 321
BmrFI CCNGG 1 cut(s) 321
BpuEI CTTGAG 1 cut(s) 115
BsaAI YACGTR 1 cut(s) 328
BsaJI CCNNGG 2 cut(s) 196, 308
Bsc4I CCNNNNNNNGG 1 cut(s) 86
BseBI CCWGG 1 cut(s) 321
BseDI CCNNGG 2 cut(s) 196, 308
BseLI CCNNNNNNNGG 1 cut(s) 86
BseRI GAGGAG 1 cut(s) 354
BseSI GKGCMC 1 cut(s) 178
BseYI CCCAGC 2 cut(s) 272, 344
BsiHKAI GWGCWC 1 cut(s) 178
BslI CCNNNNNNNGG 1 cut(s) 86
Bsp1286I GDGCHC 1 cut(s) 178
Bsp1407I TGTACA 1 cut(s) 62
Bsp19I CCATGG 1 cut(s) 308
BspHI TCATGA 1 cut(s) 168
BspMI ACCTGC 1 cut(s) 77
BsrGI TGTACA 1 cut(s) 62
BssECI CCNNGG 2 cut(s) 196, 308
BssT1I CCWWGG 1 cut(s) 308
Bst2UI CCWGG 1 cut(s) 321
BstAUI TGTACA 1 cut(s) 62
BstBAI YACGTR 1 cut(s) 328
BstDEI CTNAG 1 cut(s) 399
BstDSI CCRYGG 2 cut(s) 196, 308
BstENI CCTNNNNNAGG 1 cut(s) 84
BstMWI GCNNNNNNNGC 2 cut(s) 269, 360
BstNI CCWGG 1 cut(s) 321
BstSCI CCNGG 1 cut(s) 319
BstSLI GKGCMC 1 cut(s) 178
BstSNI TACGTA 1 cut(s) 328
BsuI GTATCC 1 cut(s) 155
BtgI CCRYGG 2 cut(s) 196, 308
BtgZI GCGATG 1 cut(s) 369
BveI ACCTGC 1 cut(s) 77
CciI TCATGA 1 cut(s) 168
Csp6I GTAC 2 cut(s) 63, 403
CviAII CATG 4 cut(s) 83, 169, 209, 309
CviJI RGCY 4 cut(s) 195, 272, 344, 363
CviKI_1 RGCY 4 cut(s) 195, 272, 344, 363
CviQI GTAC 2 cut(s) 63, 403
DdeI CTNAG 1 cut(s) 399
Eco105I TACGTA 1 cut(s) 328
Eco130I CCWWGG 1 cut(s) 308
EcoNI CCTNNNNNAGG 1 cut(s) 84
EcoRII CCWGG 1 cut(s) 319
EcoT14I CCWWGG 1 cut(s) 308
ErhI CCWWGG 1 cut(s) 308
FaeI CATG 4 cut(s) 86, 172, 212, 312
FaiI YATR 9 cut(s) 18, 23, 72, 84, 144, 170, 210, 280, 310
FalI AAGNNNNNCTT 2 cut(s) 149, 181
FatI CATG 4 cut(s) 82, 168, 208, 308
FspBI CTAG 2 cut(s) 381, 406
GsaI CCCAGC 2 cut(s) 276, 348
Hin1II CATG 4 cut(s) 86, 172, 212, 312
HindIII AAGCTT 1 cut(s) 361
Hpy166II GTNNAC 2 cut(s) 176, 200
Hpy188I TCNGA 1 cut(s) 115
Hpy188III TCNNGA 1 cut(s) 169
Hpy8I GTNNAC 2 cut(s) 176, 200
HpyAV CCTTC 1 cut(s) 397
HpyCH4IV ACGT 1 cut(s) 327
HpyCH4V TGCA 4 cut(s) 16, 86, 140, 176
HpyF10VI GCNNNNNNNGC 2 cut(s) 269, 360
HpyF3I CTNAG 1 cut(s) 399
HpySE526I ACGT 1 cut(s) 327
Hsp92II CATG 4 cut(s) 86, 172, 212, 312
LmnI GCTCC 1 cut(s) 341
LpnPI CCDG 7 cut(s) 34, 72, 258, 269, 306, 330, 333
MaeI CTAG 2 cut(s) 381, 406
MaeII ACGT 1 cut(s) 327
MaeIII GTNAC 3 cut(s) 89, 211, 323
MboII GAAGA 2 cut(s) 302, 305
MhlI GDGCHC 1 cut(s) 178
MluCI AATT 6 cut(s) 73, 132, 204, 227, 256, 392
MnlI CCTC 4 cut(s) 45, 90, 92, 332
MspR9I CCNGG 1 cut(s) 321
MvaI CCWGG 1 cut(s) 321
MwoI GCNNNNNNNGC 2 cut(s) 269, 360
NcoI CCATGG 1 cut(s) 308
NlaIII CATG 4 cut(s) 86, 172, 212, 312
NmuCI GTSAC 1 cut(s) 211
PagI TCATGA 1 cut(s) 168
Ppu21I YACGTR 1 cut(s) 328
Psp6I CCWGG 1 cut(s) 319
PspFI CCCAGC 2 cut(s) 272, 344
PspGI CCWGG 1 cut(s) 319
RsaI GTAC 2 cut(s) 64, 404
RsaNI GTAC 2 cut(s) 63, 403
ScaI AGTACT 1 cut(s) 404
ScrFI CCNGG 1 cut(s) 321
SduI GDGCHC 1 cut(s) 178
SetI ASST 9 cut(s) 56, 91, 103, 270, 325, 330, 346, 365, 389
SmlI CTYRAG 1 cut(s) 94
SmoI CTYRAG 1 cut(s) 94
SnaBI TACGTA 1 cut(s) 328
Sse9I AATT 6 cut(s) 73, 132, 204, 227, 256, 392
SspMI CTAG 2 cut(s) 381, 406
StyD4I CCNGG 1 cut(s) 319
StyI CCWWGG 1 cut(s) 308
TaiI ACGT 1 cut(s) 330
TasI AATT 6 cut(s) 73, 132, 204, 227, 256, 392
TatI WGTACW 2 cut(s) 62, 402
TseFI GTSAC 1 cut(s) 211
Tsp45I GTSAC 1 cut(s) 211
TspDTI ATGAA 5 cut(s) 38, 99, 157, 197, 372
VneI GTGCAC 1 cut(s) 174
XagI CCTNNNNNAGG 1 cut(s) 84
XapI RAATTY 5 cut(s) 132, 204, 227, 256, 392
XspI CTAG 2 cut(s) 381, 406
ZrmI AGTACT 1 cut(s) 404
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.