Rmu_sc0005861.1_g000007

At4g26485-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005861.1
OG0000364
Physical Location & Seq
Forward (+)
29063 .. 29416
354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005861.1_g000007.1.cds

Sequence Viewer

Length: 354 bp
atgctgactaaaaatggagaaattcatgtcacacacaagacaacatatccttttagtgagtgggaaatagtagagttagcagaggaggctgagttattcttggttaatgaagaagagttttacaaactggattatccgggatatgaaaacaagagaggagatgggatttgcgacgagtcattcccggttgggaagtctagcaccttcatctttgccaagcggttgtaccctaatacgaggttccacccaggtactttgagtatcagtacatggcctgctgatatagtagatatggcttgcacctatttagatagcttggagatgaagaaatccaacctcggccataaagcctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2431

Protein Analysis

117

Amino Acids

13.43

Weight (kDa)

5.02

Isoelectric Point (pI)

48.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000364)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26485
fragaria_vesca FvH4_3g14860 FvH4_3g14860 FvH4_3g14861 FvH4_3g14862 FvH4_3g14862 FvH4_3g14880 FvH4_3g14880 FvH4_3g14890 FvH4_3g14891 FvH4_3g14892 FvH4_3g14901 FvH4_3g14902
malus_domestica MD05G1233500.v1.1 MD05G1233600.v1.1 MD10G1209900.v1.1 MD10G1210000.v1.1 MD10G1210100.v1.1 MD10G1210300.v1.1 MD10G1210400.v1.1
prunus_persica Prupe.4G132900_v2.0.a1 Prupe.4G133200_v2.0.a1 Prupe.4G133200_v2.0.a1 Prupe.4G133200_v2.0.a1 Prupe.4G133300_v2.0.a1 Prupe.4G133300_v2.0.a1 Prupe.4G133400_v2.0.a1 Prupe.4G133500_v2.0.a1 Prupe.4G133500_v2.0.a1 Prupe.4G133600_v2.0.a1 Prupe.4G133600_v2.0.a1
pyrus_communis pycom05g21110 pycom05g21120 pycom10g17840
rosa_chinensis RchiOBHm_Chr5g0024361 RchiOBHm_Chr5g0024391 RchiOBHm_Chr5g0024411 RchiOBHm_Chr5g0024431 RchiOBHm_Chr5g0024451 RchiOBHm_Chr5g0024461 RchiOBHm_Chr5g0024471 RchiOBHm_Chr5g0024481 RchiOBHm_Chr5g0024501 RchiOBHm_Chr5g0024511
rosa_laevigata RLG00000032799 RLG00000032800 RLG00000032801 RLG00000032802 RLG00000032803
rosa_multiflora Rmu_sc0000761.1_g000010 Rmu_sc0000761.1_g000014 Rmu_sc0000761.1_g000018 Rmu_sc0000761.1_g000025 Rmu_sc0005861.1_g000002 Rmu_sc0005861.1_g000004 Rmu_sc0005861.1_g000007 Rmu_sc0011809.1_g000001 Rmu_sc0011809.1_g000006
rosa_roxburghii Rroxscaffold_1G00054740 Rroxscaffold_1G00054750 Rroxscaffold_1G00054760 Rroxscaffold_1G00054770 Rroxscaffold_1G00054780 Rroxscaffold_1G00054790 Rroxscaffold_1G00054840 Rroxscaffold_1G00055860 Rroxscaffold_3G00237770 Rroxscaffold_6G00389330
rosa_rugosa Rorug05G0083300 Rorug05G0083400 Rorug05G0083400
rosa_samantha Rh5AG174100 Rh5AG174300 Rh5AG174600 Rh5AG174700 Rh5AG175000 Rh5AG175300 Rh5BG171000 Rh5BG171400 Rh5BG171500 Rh5BG171600 Rh5BG171700 Rh5BG172100 Rh5BG172300 Rh5BG172500 Rh5CG187400 Rh5CG187700 Rh5CG187900 Rh5CG188000 Rh5CG188200 Rh5CG188400 Rh5CG188500 Rh5CG188600 Rh5DG173200 Rh5DG173400 Rh5DG173500 Rh5DG173700 Rh5DG173900 Rh5DG174000 Rh5DG174100
rosa_wichuraiana Rw5G015700 Rw5G015730 Rw5G015740 Rw5G015770 Rw5G015790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 220
AcoI YGGCCR 1 cut(s) 340
AcsI RAATTY 1 cut(s) 21
AfaI GTAC 3 cut(s) 227, 253, 268
AjnI CCWGG 1 cut(s) 247
AluBI AGCT 1 cut(s) 315
AluI AGCT 1 cut(s) 315
AoxI GGCC 2 cut(s) 272, 340
ApoI RAATTY 1 cut(s) 21
AsuC2I CCSGG 2 cut(s) 138, 185
BccI CCATC 1 cut(s) 155
BciT130I CCWGG 1 cut(s) 249
BcnI CCSGG 2 cut(s) 138, 185
BfaI CTAG 2 cut(s) 198, 352
Bme1390I CCNGG 3 cut(s) 138, 185, 249
BmiI GGNNCC 1 cut(s) 242
BmrFI CCNGG 3 cut(s) 138, 185, 249
BpuMI CCSGG 2 cut(s) 138, 185
BsaJI CCNNGG 2 cut(s) 247, 337
BsaXI ACNNNNNCTCC 2 cut(s) 77, 107
Bse1I ACTGG 1 cut(s) 132
BseBI CCWGG 1 cut(s) 249
BseDI CCNNGG 2 cut(s) 247, 337
BseMII CTCAG 1 cut(s) 81
BseNI ACTGG 1 cut(s) 132
BseRI GAGGAG 2 cut(s) 98, 171
BshFI GGCC 2 cut(s) 274, 342
BsiSI CCGG 2 cut(s) 137, 185
BsnI GGCC 2 cut(s) 274, 342
BspACI CCGC 1 cut(s) 220
BspANI GGCC 2 cut(s) 274, 342
BspCNI CTCAG 1 cut(s) 82
BspLI GGNNCC 1 cut(s) 242
BsrI ACTGG 1 cut(s) 132
BssECI CCNNGG 2 cut(s) 247, 337
Bst2UI CCWGG 1 cut(s) 249
Bst6I CTCTTC 1 cut(s) 108
BstC8I GCNNGC 2 cut(s) 276, 298
BstDEI CTNAG 1 cut(s) 90
BstMWI GCNNNNNNNGC 1 cut(s) 86
BstNI CCWGG 1 cut(s) 249
BstSCI CCNGG 3 cut(s) 136, 183, 247
BsuRI GGCC 2 cut(s) 274, 342
Cac8I GCNNGC 2 cut(s) 276, 298
Csp6I GTAC 3 cut(s) 226, 252, 267
CviAII CATG 2 cut(s) 26, 270
CviJI RGCY 6 cut(s) 89, 274, 296, 315, 342, 350
CviKI_1 RGCY 6 cut(s) 89, 274, 296, 315, 342, 350
CviQI GTAC 3 cut(s) 226, 252, 267
DdeI CTNAG 1 cut(s) 90
EaeI YGGCCR 1 cut(s) 340
Eam1104I CTCTTC 1 cut(s) 108
EarI CTCTTC 1 cut(s) 108
EcoRII CCWGG 1 cut(s) 247
FaeI CATG 2 cut(s) 29, 273
FaiI YATR 7 cut(s) 27, 46, 144, 271, 284, 293, 345
FatI CATG 2 cut(s) 25, 269
FspBI CTAG 2 cut(s) 198, 352
HaeIII GGCC 2 cut(s) 274, 342
HapII CCGG 2 cut(s) 137, 185
Hin1II CATG 2 cut(s) 29, 273
HinfI GANTC 1 cut(s) 176
HpaII CCGG 2 cut(s) 137, 185
Hpy99I CGWCG 1 cut(s) 176
HpyAV CCTTC 1 cut(s) 214
HpyCH4V TGCA 1 cut(s) 300
HpyF10VI GCNNNNNNNGC 1 cut(s) 86
HpyF3I CTNAG 1 cut(s) 90
Hsp92II CATG 2 cut(s) 29, 273
LpnPI CCDG 6 cut(s) 113, 150, 198, 234, 261, 288
MaeI CTAG 2 cut(s) 198, 352
MaeIII GTNAC 1 cut(s) 28
MboII GAAGA 3 cut(s) 122, 125, 337
MluCI AATT 1 cut(s) 21
MlyI GAGTC 1 cut(s) 185
MnlI CCTC 5 cut(s) 76, 79, 149, 231, 347
MseI TTAA 1 cut(s) 105
MspI CCGG 2 cut(s) 137, 185
MspR9I CCNGG 3 cut(s) 138, 185, 249
MvaI CCWGG 1 cut(s) 249
MwoI GCNNNNNNNGC 1 cut(s) 86
NciI CCSGG 2 cut(s) 138, 185
NlaIII CATG 2 cut(s) 29, 273
NlaIV GGNNCC 1 cut(s) 242
NmeAIII GCCGAG 1 cut(s) 318
NmuCI GTSAC 1 cut(s) 28
PfoI TCCNGGA 1 cut(s) 136
PleI GAGTC 1 cut(s) 184
PpsI GAGTC 1 cut(s) 184
Psp6I CCWGG 1 cut(s) 247
PspGI CCWGG 1 cut(s) 247
PspN4I GGNNCC 1 cut(s) 242
RsaI GTAC 3 cut(s) 227, 253, 268
RsaNI GTAC 3 cut(s) 226, 252, 267
SaqAI TTAA 1 cut(s) 105
SchI GAGTC 1 cut(s) 185
ScrFI CCNGG 3 cut(s) 138, 185, 249
SetI ASST 6 cut(s) 206, 242, 253, 305, 317, 339
Sse9I AATT 1 cut(s) 21
SsiI CCGC 1 cut(s) 220
SspMI CTAG 2 cut(s) 198, 352
StyD4I CCNGG 3 cut(s) 136, 183, 247
TasI AATT 1 cut(s) 21
TatI WGTACW 1 cut(s) 266
Tru1I TTAA 1 cut(s) 105
Tru9I TTAA 1 cut(s) 105
TseFI GTSAC 1 cut(s) 28
Tsp45I GTSAC 1 cut(s) 28
TspDTI ATGAA 5 cut(s) 14, 123, 159, 196, 338
XapI RAATTY 1 cut(s) 21
XspI CTAG 2 cut(s) 198, 352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.