FvH4_3g14861

At4g26485-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000364
Physical Location & Seq
Forward (+)
9181266 .. 9182466
1201 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g14861.t1

Sequence Viewer

Length: 738 bp
ATGGAAGAGCAAGAGGCTATATATGATAGAGAGCCAGAGGTTATATTTGCAGATACTAAACATGAGAAAAGGATTATGCATTACAGAAGCAACCAGAAGATACTGTTAGTGGGTGAGGGCAACTTCTCTTTTGCTGCTTGTTTAGCCAAGAGATTTGGATCAGCAAAGAACATGGTTGCCACTTCTCTTGACTCCAAAGAATCAGTAATTTGCAAATACTCAACTGCAGCATCAAGTAACTTGAAGGAATTAGAGGACTTGGGATGTGTACTCTTGCATGAGGTGGATGTGAACACCATGAGACAGCACCCTCTTCTAGTTAATCAACGATTTGATCGCGTCGTGTTTAATTTTCCTCATGCTGGTTTCATTTTCAGGGAACATGAGAAGAGCCAGATCAAGTTGCATCAGGATTTGGTGAGGGCATTCTTTGCCAGTGCATGTGATATGCTGAATGAAAGTGGGGAAGTTCATGTGACTCACAAGACTGCATATCCATTCAGTAAGTGGGAGATAGTGAAGTTAGCAAAAAAGGCCGAGTTATTTCTAATTGAGGAAGCATCATTTTCAAGATGGGATTACCCTGGTTATGTAAACATGAGAGGAAGTGGAATCAACTGCGACCAAACATTTCCTGTTGGGCAATGTAGCACCTACAAATTTGCCAAGATGCCGCTTCTTGAACATTATGATCTGCTAATGAGTAAATTGTCAATTGGATATGGCCCAAGGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2431

Protein Analysis

246

Amino Acids

28.09

Weight (kDa)

6.79

Isoelectric Point (pI)

44.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BMT5-like PF10354 35 - 200 5.9e-55 rRNA (uridine-N3-)-methyltransferase BTM5-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000364)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26485
fragaria_vesca FvH4_3g14860 FvH4_3g14860 FvH4_3g14861 FvH4_3g14862 FvH4_3g14862 FvH4_3g14880 FvH4_3g14880 FvH4_3g14890 FvH4_3g14891 FvH4_3g14892 FvH4_3g14901 FvH4_3g14902
malus_domestica MD05G1233500.v1.1 MD05G1233600.v1.1 MD10G1209900.v1.1 MD10G1210000.v1.1 MD10G1210100.v1.1 MD10G1210300.v1.1 MD10G1210400.v1.1
prunus_persica Prupe.4G132900_v2.0.a1 Prupe.4G133200_v2.0.a1 Prupe.4G133200_v2.0.a1 Prupe.4G133200_v2.0.a1 Prupe.4G133300_v2.0.a1 Prupe.4G133300_v2.0.a1 Prupe.4G133400_v2.0.a1 Prupe.4G133500_v2.0.a1 Prupe.4G133500_v2.0.a1 Prupe.4G133600_v2.0.a1 Prupe.4G133600_v2.0.a1
pyrus_communis pycom05g21110 pycom05g21120 pycom10g17840
rosa_chinensis RchiOBHm_Chr5g0024361 RchiOBHm_Chr5g0024391 RchiOBHm_Chr5g0024411 RchiOBHm_Chr5g0024431 RchiOBHm_Chr5g0024451 RchiOBHm_Chr5g0024461 RchiOBHm_Chr5g0024471 RchiOBHm_Chr5g0024481 RchiOBHm_Chr5g0024501 RchiOBHm_Chr5g0024511
rosa_laevigata RLG00000032799 RLG00000032800 RLG00000032801 RLG00000032802 RLG00000032803
rosa_multiflora Rmu_sc0000761.1_g000010 Rmu_sc0000761.1_g000014 Rmu_sc0000761.1_g000018 Rmu_sc0000761.1_g000025 Rmu_sc0005861.1_g000002 Rmu_sc0005861.1_g000004 Rmu_sc0005861.1_g000007 Rmu_sc0011809.1_g000001 Rmu_sc0011809.1_g000006
rosa_roxburghii Rroxscaffold_1G00054740 Rroxscaffold_1G00054750 Rroxscaffold_1G00054760 Rroxscaffold_1G00054770 Rroxscaffold_1G00054780 Rroxscaffold_1G00054790 Rroxscaffold_1G00054840 Rroxscaffold_1G00055860 Rroxscaffold_3G00237770 Rroxscaffold_6G00389330
rosa_rugosa Rorug05G0083300 Rorug05G0083400 Rorug05G0083400
rosa_samantha Rh5AG174100 Rh5AG174300 Rh5AG174600 Rh5AG174700 Rh5AG175000 Rh5AG175300 Rh5BG171000 Rh5BG171400 Rh5BG171500 Rh5BG171600 Rh5BG171700 Rh5BG172100 Rh5BG172300 Rh5BG172500 Rh5CG187400 Rh5CG187700 Rh5CG187900 Rh5CG188000 Rh5CG188200 Rh5CG188400 Rh5CG188500 Rh5CG188600 Rh5DG173200 Rh5DG173400 Rh5DG173500 Rh5DG173700 Rh5DG173900 Rh5DG174000 Rh5DG174100
rosa_wichuraiana Rw5G015700 Rw5G015730 Rw5G015740 Rw5G015770 Rw5G015790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 339
AciI CCGC 1 cut(s) 674
AclWI GGATC 1 cut(s) 166
AcsI RAATTY 1 cut(s) 659
AfaI GTAC 1 cut(s) 270
AfiI CCNNNNNNNGG 1 cut(s) 362
AgsI TTSAA 3 cut(s) 244, 570, 683
AjnI CCWGG 1 cut(s) 583
Alw26I GTCTC 1 cut(s) 295
AlwI GGATC 1 cut(s) 166
AoxI GGCC 2 cut(s) 534, 724
ApeKI GCWGC 2 cut(s) 134, 227
ApoI RAATTY 1 cut(s) 659
AspS9I GGNCC 1 cut(s) 725
AsuHPI GGTGA 2 cut(s) 125, 430
BbvI GCAGC 2 cut(s) 121, 239
BccI CCATC 1 cut(s) 567
BciT130I CCWGG 1 cut(s) 585
BcoDI GTCTC 1 cut(s) 295
BfaI CTAG 1 cut(s) 317
BfmI CTRYAG 1 cut(s) 225
BisI GCNGC 3 cut(s) 135, 228, 674
BlsI GCNGC 3 cut(s) 136, 229, 675
Bme1390I CCNGG 1 cut(s) 585
BmgT120I GGNCC 1 cut(s) 725
BmrFI CCNGG 1 cut(s) 585
BmsI GCATC 4 cut(s) 239, 415, 569, 660
BsaBI GATNNNNATC 1 cut(s) 157
BsaJI CCNNGG 2 cut(s) 583, 728
Bsc4I CCNNNNNNNGG 1 cut(s) 362
Bse1I ACTGG 1 cut(s) 435
Bse3DI GCAATG 1 cut(s) 650
Bse8I GATNNNNATC 1 cut(s) 157
BseBI CCWGG 1 cut(s) 585
BseDI CCNNGG 2 cut(s) 583, 728
BseGI GGATG 2 cut(s) 269, 292
BseJI GATNNNNATC 1 cut(s) 157
BseLI CCNNNNNNNGG 1 cut(s) 362
BseMI GCAATG 1 cut(s) 650
BseNI ACTGG 1 cut(s) 435
BseXI GCAGC 2 cut(s) 121, 239
Bsh1236I CGCG 1 cut(s) 339
BshFI GGCC 2 cut(s) 536, 726
BslI CCNNNNNNNGG 1 cut(s) 362
BsmAI GTCTC 1 cut(s) 295
BsmI GAATGC 1 cut(s) 425
BsnI GGCC 2 cut(s) 536, 726
Bsp143I GATC 4 cut(s) 158, 334, 396, 691
BspACI CCGC 1 cut(s) 674
BspANI GGCC 2 cut(s) 536, 726
BspFNI CGCG 1 cut(s) 339
BspMAI CTGCAG 1 cut(s) 229
BspPI GGATC 1 cut(s) 166
BspQI GCTCTTC 1 cut(s) 383
BsrDI GCAATG 1 cut(s) 650
BsrI ACTGG 1 cut(s) 435
BssECI CCNNGG 2 cut(s) 583, 728
BssMI GATC 4 cut(s) 158, 334, 396, 691
BssT1I CCWWGG 1 cut(s) 728
Bst2UI CCWGG 1 cut(s) 585
Bst4CI ACNGT 1 cut(s) 105
Bst6I CTCTTC 2 cut(s) 318, 383
BstAPI GCANNNNNTGC 1 cut(s) 431
BstF5I GGATG 2 cut(s) 269, 292
BstFNI CGCG 1 cut(s) 339
BstKTI GATC 4 cut(s) 161, 337, 399, 694
BstMAI GTCTC 1 cut(s) 295
BstMBI GATC 4 cut(s) 158, 334, 396, 691
BstMWI GCNNNNNNNGC 3 cut(s) 143, 431, 533
BstNI CCWGG 1 cut(s) 585
BstNSI RCATGY 1 cut(s) 444
BstSCI CCNGG 1 cut(s) 583
BstSFI CTRYAG 1 cut(s) 225
BstUI CGCG 1 cut(s) 339
BstV1I GCAGC 2 cut(s) 121, 239
BsuRI GGCC 2 cut(s) 536, 726
BtsCI GGATG 2 cut(s) 269, 292
BtsIMutI CAGTG 1 cut(s) 442
Cfr13I GGNCC 1 cut(s) 725
CseI GACGC 1 cut(s) 328
Csp6I GTAC 1 cut(s) 269
CspCI CAANNNNNGTGG 2 cut(s) 169, 204
CviAII CATG 9 cut(s) 62, 172, 278, 298, 359, 383, 441, 473, 598
CviJI RGCY 6 cut(s) 17, 34, 146, 393, 536, 726
CviKI_1 RGCY 6 cut(s) 17, 34, 146, 393, 536, 726
CviQI GTAC 1 cut(s) 269
DpnI GATC 4 cut(s) 160, 336, 398, 693
DpnII GATC 4 cut(s) 158, 334, 396, 691
Eam1104I CTCTTC 2 cut(s) 318, 383
EarI CTCTTC 2 cut(s) 318, 383
Eco130I CCWWGG 1 cut(s) 728
EcoRII CCWGG 1 cut(s) 583
EcoT14I CCWWGG 1 cut(s) 728
EcoT22I ATGCAT 1 cut(s) 81
ErhI CCWWGG 1 cut(s) 728
FaeI CATG 9 cut(s) 65, 175, 281, 301, 362, 386, 444, 476, 601
FatI CATG 9 cut(s) 61, 171, 277, 297, 358, 382, 440, 472, 597
Fnu4HI GCNGC 3 cut(s) 135, 228, 674
FokI GGATG 2 cut(s) 276, 299
Fsp4HI GCNGC 3 cut(s) 135, 228, 674
FspBI CTAG 1 cut(s) 317
GluI GCNGC 3 cut(s) 135, 228, 674
HaeIII GGCC 2 cut(s) 536, 726
HgaI GACGC 1 cut(s) 328
Hin1II CATG 9 cut(s) 65, 175, 281, 301, 362, 386, 444, 476, 601
HinfI GANTC 4 cut(s) 191, 200, 478, 612
HphI GGTGA 2 cut(s) 125, 430
Hpy166II GTNNAC 3 cut(s) 269, 292, 595
Hpy188III TCNNGA 4 cut(s) 188, 410, 570, 680
Hpy8I GTNNAC 3 cut(s) 269, 292, 595
Hpy99I CGWCG 1 cut(s) 344
HpyAV CCTTC 1 cut(s) 238
HpyCH4III ACNGT 1 cut(s) 105
HpyCH4V TGCA 8 cut(s) 50, 79, 213, 227, 277, 406, 440, 491
HpyF10VI GCNNNNNNNGC 3 cut(s) 143, 431, 533
Hsp92II CATG 9 cut(s) 65, 175, 281, 301, 362, 386, 444, 476, 601
Kzo9I GATC 4 cut(s) 158, 334, 396, 691
LguI GCTCTTC 1 cut(s) 383
Lsp1109I GCAGC 2 cut(s) 121, 239
LweI GCATC 4 cut(s) 239, 415, 569, 660
MaeI CTAG 1 cut(s) 317
MaeIII GTNAC 2 cut(s) 236, 475
MalI GATC 4 cut(s) 160, 336, 398, 693
MboI GATC 4 cut(s) 158, 334, 396, 691
MboII GAAGA 4 cut(s) 17, 109, 305, 400
MfeI CAATTG 1 cut(s) 714
MluCI AATT 7 cut(s) 207, 248, 349, 549, 659, 707, 714
MlyI GAGTC 2 cut(s) 185, 472
Mph1103I ATGCAT 1 cut(s) 81
MseI TTAA 2 cut(s) 321, 348
MspR9I CCNGG 1 cut(s) 585
MunI CAATTG 1 cut(s) 714
Mva1269I GAATGC 1 cut(s) 425
MvaI CCWGG 1 cut(s) 585
MvnI CGCG 1 cut(s) 339
MwoI GCNNNNNNNGC 3 cut(s) 143, 431, 533
NdeII GATC 4 cut(s) 158, 334, 396, 691
NlaIII CATG 9 cut(s) 65, 175, 281, 301, 362, 386, 444, 476, 601
NmeAIII GCCGAG 1 cut(s) 562
NmuCI GTSAC 1 cut(s) 475
NsiI ATGCAT 1 cut(s) 81
NspI RCATGY 1 cut(s) 444
PciSI GCTCTTC 1 cut(s) 383
PctI GAATGC 1 cut(s) 425
PfeI GAWTC 2 cut(s) 200, 612
PkrI GCNGC 3 cut(s) 136, 229, 675
PleI GAGTC 2 cut(s) 185, 472
PpsI GAGTC 2 cut(s) 185, 472
Psp6I CCWGG 1 cut(s) 583
PspGI CCWGG 1 cut(s) 583
PspPI GGNCC 1 cut(s) 725
PstI CTGCAG 1 cut(s) 229
RsaI GTAC 1 cut(s) 270
RsaNI GTAC 1 cut(s) 269
SapI GCTCTTC 1 cut(s) 383
SaqAI TTAA 2 cut(s) 321, 348
SatI GCNGC 3 cut(s) 135, 228, 674
Sau3AI GATC 4 cut(s) 158, 334, 396, 691
Sau96I GGNCC 1 cut(s) 725
SchI GAGTC 2 cut(s) 185, 472
ScrFI CCNGG 1 cut(s) 585
SetI ASST 3 cut(s) 42, 285, 656
SfaNI GCATC 4 cut(s) 239, 415, 569, 660
SfcI CTRYAG 1 cut(s) 225
Sse9I AATT 7 cut(s) 207, 248, 349, 549, 659, 707, 714
SsiI CCGC 1 cut(s) 674
SspMI CTAG 1 cut(s) 317
StyD4I CCNGG 1 cut(s) 583
StyI CCWWGG 1 cut(s) 728
TaaI ACNGT 1 cut(s) 105
TasI AATT 7 cut(s) 207, 248, 349, 549, 659, 707, 714
TatI WGTACW 1 cut(s) 268
TauI GCSGC 1 cut(s) 676
TfiI GAWTC 2 cut(s) 200, 612
Tru1I TTAA 2 cut(s) 321, 348
Tru9I TTAA 2 cut(s) 321, 348
TscAI CASTG 1 cut(s) 442
TseFI GTSAC 1 cut(s) 475
TseI GCWGC 2 cut(s) 134, 227
Tsp45I GTSAC 1 cut(s) 475
TspDTI ATGAA 3 cut(s) 358, 461, 471
TspRI CASTG 1 cut(s) 442
XapI RAATTY 1 cut(s) 659
XceI RCATGY 1 cut(s) 444
XcmI CCANNNNNNNNNTGG 1 cut(s) 504
XspI CTAG 1 cut(s) 317
Zsp2I ATGCAT 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.