RchiOBHm_Chr5g0024411

At4g26485-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000364
Physical Location & Seq
Forward (+)
18566060 .. 18566332
273 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30416

Sequence Viewer

Length: 273 bp
ATGAACTCAAGGGAGATGCTGACTAAAAATGGAGAAATTCATGTCACACACAAGACATCATATCCTTTTAGTGAGTGGGAAATAGTGGAGTTAGCAGAGGAGGCTGAGTTATTCTTGGTTAAAGAAGAAGAGTTTTACAAACTGGATTATCCGGGATATGAAAACAAGAGAGGAGATGGGATTTGCGACGAGTCATTCCCTGTTGGGAAGTCGGGCACCTTCATCTTGCCAAGCGGTTGTACCCTAATACGAGGTTCCACCGAGGTACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2431

Protein Analysis

90

Amino Acids

10.24

Weight (kDa)

4.65

Isoelectric Point (pI)

55.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BMT5-like PF10354 2 - 57 1.2e-12 rRNA (uridine-N3-)-methyltransferase BTM5-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000364)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26485
fragaria_vesca FvH4_3g14860 FvH4_3g14860 FvH4_3g14861 FvH4_3g14862 FvH4_3g14862 FvH4_3g14880 FvH4_3g14880 FvH4_3g14890 FvH4_3g14891 FvH4_3g14892 FvH4_3g14901 FvH4_3g14902
malus_domestica MD05G1233500.v1.1 MD05G1233600.v1.1 MD10G1209900.v1.1 MD10G1210000.v1.1 MD10G1210100.v1.1 MD10G1210300.v1.1 MD10G1210400.v1.1
prunus_persica Prupe.4G132900_v2.0.a1 Prupe.4G133200_v2.0.a1 Prupe.4G133200_v2.0.a1 Prupe.4G133200_v2.0.a1 Prupe.4G133300_v2.0.a1 Prupe.4G133300_v2.0.a1 Prupe.4G133400_v2.0.a1 Prupe.4G133500_v2.0.a1 Prupe.4G133500_v2.0.a1 Prupe.4G133600_v2.0.a1 Prupe.4G133600_v2.0.a1
pyrus_communis pycom05g21110 pycom05g21120 pycom10g17840
rosa_chinensis RchiOBHm_Chr5g0024361 RchiOBHm_Chr5g0024391 RchiOBHm_Chr5g0024411 RchiOBHm_Chr5g0024431 RchiOBHm_Chr5g0024451 RchiOBHm_Chr5g0024461 RchiOBHm_Chr5g0024471 RchiOBHm_Chr5g0024481 RchiOBHm_Chr5g0024501 RchiOBHm_Chr5g0024511
rosa_laevigata RLG00000032799 RLG00000032800 RLG00000032801 RLG00000032802 RLG00000032803
rosa_multiflora Rmu_sc0000761.1_g000010 Rmu_sc0000761.1_g000014 Rmu_sc0000761.1_g000018 Rmu_sc0000761.1_g000025 Rmu_sc0005861.1_g000002 Rmu_sc0005861.1_g000004 Rmu_sc0005861.1_g000007 Rmu_sc0011809.1_g000001 Rmu_sc0011809.1_g000006
rosa_roxburghii Rroxscaffold_1G00054740 Rroxscaffold_1G00054750 Rroxscaffold_1G00054760 Rroxscaffold_1G00054770 Rroxscaffold_1G00054780 Rroxscaffold_1G00054790 Rroxscaffold_1G00054840 Rroxscaffold_1G00055860 Rroxscaffold_3G00237770 Rroxscaffold_6G00389330
rosa_rugosa Rorug05G0083300 Rorug05G0083400 Rorug05G0083400
rosa_samantha Rh5AG174100 Rh5AG174300 Rh5AG174600 Rh5AG174700 Rh5AG175000 Rh5AG175300 Rh5BG171000 Rh5BG171400 Rh5BG171500 Rh5BG171600 Rh5BG171700 Rh5BG172100 Rh5BG172300 Rh5BG172500 Rh5CG187400 Rh5CG187700 Rh5CG187900 Rh5CG188000 Rh5CG188200 Rh5CG188400 Rh5CG188500 Rh5CG188600 Rh5DG173200 Rh5DG173400 Rh5DG173500 Rh5DG173700 Rh5DG173900 Rh5DG174000 Rh5DG174100
rosa_wichuraiana Rw5G015700 Rw5G015730 Rw5G015740 Rw5G015770 Rw5G015790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 215
AciI CCGC 1 cut(s) 234
AcsI RAATTY 1 cut(s) 36
AfaI GTAC 2 cut(s) 241, 267
ApoI RAATTY 1 cut(s) 36
AsuC2I CCSGG 1 cut(s) 153
BaeGI GKGCMC 1 cut(s) 218
BanI GGYRCC 1 cut(s) 215
BccI CCATC 1 cut(s) 170
BcnI CCSGG 1 cut(s) 153
Bme1390I CCNGG 1 cut(s) 153
BmiI GGNNCC 2 cut(s) 217, 256
BmrFI CCNGG 1 cut(s) 153
BmsI GCATC 1 cut(s) 6
BpuMI CCSGG 1 cut(s) 153
BsaJI CCNNGG 1 cut(s) 261
BsaXI ACNNNNNCTCC 2 cut(s) 92, 122
Bse1I ACTGG 1 cut(s) 147
BseDI CCNNGG 1 cut(s) 261
BseMII CTCAG 1 cut(s) 96
BseNI ACTGG 1 cut(s) 147
BseRI GAGGAG 2 cut(s) 113, 186
BseSI GKGCMC 1 cut(s) 218
BshNI GGYRCC 1 cut(s) 215
BsiSI CCGG 1 cut(s) 152
Bsp1286I GDGCHC 1 cut(s) 218
BspACI CCGC 1 cut(s) 234
BspCNI CTCAG 1 cut(s) 97
BspLI GGNNCC 2 cut(s) 217, 256
BspT107I GGYRCC 1 cut(s) 215
BsrI ACTGG 1 cut(s) 147
BssECI CCNNGG 1 cut(s) 261
Bst6I CTCTTC 1 cut(s) 123
BstDEI CTNAG 1 cut(s) 105
BstMWI GCNNNNNNNGC 1 cut(s) 101
BstSCI CCNGG 1 cut(s) 151
BstSLI GKGCMC 1 cut(s) 218
Csp6I GTAC 2 cut(s) 240, 266
CviAII CATG 1 cut(s) 41
CviJI RGCY 1 cut(s) 104
CviKI_1 RGCY 1 cut(s) 104
CviQI GTAC 2 cut(s) 240, 266
DdeI CTNAG 1 cut(s) 105
Eam1104I CTCTTC 1 cut(s) 123
EarI CTCTTC 1 cut(s) 123
FaeI CATG 1 cut(s) 44
FaiI YATR 3 cut(s) 42, 61, 159
FatI CATG 1 cut(s) 40
HapII CCGG 1 cut(s) 152
Hin1II CATG 1 cut(s) 44
HinfI GANTC 1 cut(s) 191
HpaII CCGG 1 cut(s) 152
Hpy99I CGWCG 1 cut(s) 191
HpyAV CCTTC 1 cut(s) 229
HpyF10VI GCNNNNNNNGC 1 cut(s) 101
HpyF3I CTNAG 1 cut(s) 105
Hsp92II CATG 1 cut(s) 44
LpnPI CCDG 3 cut(s) 128, 165, 213
LweI GCATC 1 cut(s) 6
MaeIII GTNAC 1 cut(s) 43
MboII GAAGA 2 cut(s) 137, 140
MhlI GDGCHC 1 cut(s) 218
MluCI AATT 1 cut(s) 36
MlyI GAGTC 1 cut(s) 200
MnlI CCTC 5 cut(s) 91, 94, 164, 245, 256
MseI TTAA 1 cut(s) 120
MspI CCGG 1 cut(s) 152
MspR9I CCNGG 1 cut(s) 153
MwoI GCNNNNNNNGC 1 cut(s) 101
NciI CCSGG 1 cut(s) 153
NlaIII CATG 1 cut(s) 44
NlaIV GGNNCC 2 cut(s) 217, 256
NmuCI GTSAC 1 cut(s) 43
PfoI TCCNGGA 1 cut(s) 151
PleI GAGTC 1 cut(s) 199
PpsI GAGTC 1 cut(s) 199
PspN4I GGNNCC 2 cut(s) 217, 256
RsaI GTAC 2 cut(s) 241, 267
RsaNI GTAC 2 cut(s) 240, 266
SaqAI TTAA 1 cut(s) 120
SchI GAGTC 1 cut(s) 200
ScrFI CCNGG 1 cut(s) 153
SduI GDGCHC 1 cut(s) 218
SetI ASST 3 cut(s) 221, 256, 267
SfaNI GCATC 1 cut(s) 6
SmlI CTYRAG 1 cut(s) 7
SmoI CTYRAG 1 cut(s) 7
Sse9I AATT 1 cut(s) 36
SsiI CCGC 1 cut(s) 234
StyD4I CCNGG 1 cut(s) 151
TasI AATT 1 cut(s) 36
Tru1I TTAA 1 cut(s) 120
Tru9I TTAA 1 cut(s) 120
TseFI GTSAC 1 cut(s) 43
Tsp45I GTSAC 1 cut(s) 43
TspDTI ATGAA 4 cut(s) 17, 29, 174, 211
XapI RAATTY 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.