RchiOBHm_Chr5g0024501

At4g26485-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000364
Physical Location & Seq
Forward (+)
18638565 .. 18639733
1169 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30425

Sequence Viewer

Length: 705 bp
ATGGAAGAGGCTATAGCAGATACTAAACGAGAGAAAAGGATTATGCATTACAGCAGCAATCAGAAGATACTGTTAGTGGGTGAGGGCAACTTCTCTTTTGCTGCTTGTTTAGCCAAAGAGTTTGGTTCAGCGAAGAACATGGTTGCTTCTTCTCTTGACTCCAAAGGTAATAAGAATGTGTCAGTAATGATTAGATACTCAAATGCAGCACCAAGCAACTTGAAGGAATTAGAGGACATGGGATGTGTAATCTTGCATGAGGTGGATGTCCACACCATGAGACAGCACCCTCTTCTAGTTAATCAACTGTTTGATCGCGTAGTCTTTAACTTTCCTCATGCTGGCTTTATTTTCATGGAAAATCAGATGAGCCAGATCAAGTTGCATCAGGATTTAATGAGAGGATTCTTCACCAGTGCATGTGAAATGCTGAAAGAAAGTGGAGAAGTTCATGTGACTCACAAGACATCACATCCATTCAGTAAGTGGGAGATAGTGAAATTAGCAGAAGAGACCGGGTTATATCTGGTTGAGGAAGCATCGTTTACAAGAGGGGATTATCCTGGTTATTTAAACAAGAGAGGGAGTGGGAAGAAATGCAACCGTACATTTCCTGTTGGACAATGTAGCACCTACAAATTTGCCAAGCTGCCGCTTCTTGAATTTTCATTCACAACATTATATGATCATGTAAATAGAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2431

Protein Analysis

234

Amino Acids

26.63

Weight (kDa)

8.52

Isoelectric Point (pI)

35.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BMT5-like PF10354 24 - 194 5.5e-50 rRNA (uridine-N3-)-methyltransferase BTM5-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000364)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26485
fragaria_vesca FvH4_3g14860 FvH4_3g14860 FvH4_3g14861 FvH4_3g14862 FvH4_3g14862 FvH4_3g14880 FvH4_3g14880 FvH4_3g14890 FvH4_3g14891 FvH4_3g14892 FvH4_3g14901 FvH4_3g14902
malus_domestica MD05G1233500.v1.1 MD05G1233600.v1.1 MD10G1209900.v1.1 MD10G1210000.v1.1 MD10G1210100.v1.1 MD10G1210300.v1.1 MD10G1210400.v1.1
prunus_persica Prupe.4G132900_v2.0.a1 Prupe.4G133200_v2.0.a1 Prupe.4G133200_v2.0.a1 Prupe.4G133200_v2.0.a1 Prupe.4G133300_v2.0.a1 Prupe.4G133300_v2.0.a1 Prupe.4G133400_v2.0.a1 Prupe.4G133500_v2.0.a1 Prupe.4G133500_v2.0.a1 Prupe.4G133600_v2.0.a1 Prupe.4G133600_v2.0.a1
pyrus_communis pycom05g21110 pycom05g21120 pycom10g17840
rosa_chinensis RchiOBHm_Chr5g0024361 RchiOBHm_Chr5g0024391 RchiOBHm_Chr5g0024411 RchiOBHm_Chr5g0024431 RchiOBHm_Chr5g0024451 RchiOBHm_Chr5g0024461 RchiOBHm_Chr5g0024471 RchiOBHm_Chr5g0024481 RchiOBHm_Chr5g0024501 RchiOBHm_Chr5g0024511
rosa_laevigata RLG00000032799 RLG00000032800 RLG00000032801 RLG00000032802 RLG00000032803
rosa_multiflora Rmu_sc0000761.1_g000010 Rmu_sc0000761.1_g000014 Rmu_sc0000761.1_g000018 Rmu_sc0000761.1_g000025 Rmu_sc0005861.1_g000002 Rmu_sc0005861.1_g000004 Rmu_sc0005861.1_g000007 Rmu_sc0011809.1_g000001 Rmu_sc0011809.1_g000006
rosa_roxburghii Rroxscaffold_1G00054740 Rroxscaffold_1G00054750 Rroxscaffold_1G00054760 Rroxscaffold_1G00054770 Rroxscaffold_1G00054780 Rroxscaffold_1G00054790 Rroxscaffold_1G00054840 Rroxscaffold_1G00055860 Rroxscaffold_3G00237770 Rroxscaffold_6G00389330
rosa_rugosa Rorug05G0083300 Rorug05G0083400 Rorug05G0083400
rosa_samantha Rh5AG174100 Rh5AG174300 Rh5AG174600 Rh5AG174700 Rh5AG175000 Rh5AG175300 Rh5BG171000 Rh5BG171400 Rh5BG171500 Rh5BG171600 Rh5BG171700 Rh5BG172100 Rh5BG172300 Rh5BG172500 Rh5CG187400 Rh5CG187700 Rh5CG187900 Rh5CG188000 Rh5CG188200 Rh5CG188400 Rh5CG188500 Rh5CG188600 Rh5DG173200 Rh5DG173400 Rh5DG173500 Rh5DG173700 Rh5DG173900 Rh5DG174000 Rh5DG174100
rosa_wichuraiana Rw5G015700 Rw5G015730 Rw5G015740 Rw5G015770 Rw5G015790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 318
AciI CCGC 1 cut(s) 653
AcsI RAATTY 2 cut(s) 638, 662
AfaI GTAC 1 cut(s) 607
AfiI CCNNNNNNNGG 1 cut(s) 341
AgsI TTSAA 2 cut(s) 223, 662
AjnI CCWGG 1 cut(s) 562
AluBI AGCT 1 cut(s) 649
AluI AGCT 1 cut(s) 649
Alw26I GTCTC 2 cut(s) 274, 506
ApeKI GCWGC 4 cut(s) 54, 101, 206, 649
ApoI RAATTY 2 cut(s) 638, 662
AsuC2I CCSGG 1 cut(s) 517
AsuHPI GGTGA 2 cut(s) 92, 403
BbvI GCAGC 4 cut(s) 66, 88, 218, 636
BciT130I CCWGG 1 cut(s) 564
BclI TGATCA 1 cut(s) 685
BcnI CCSGG 1 cut(s) 517
BcoDI GTCTC 2 cut(s) 274, 506
BfaI CTAG 1 cut(s) 296
BfmI CTRYAG 1 cut(s) 12
BisI GCNGC 5 cut(s) 55, 102, 207, 650, 653
BlsI GCNGC 5 cut(s) 56, 103, 208, 651, 654
Bme1390I CCNGG 2 cut(s) 517, 564
BmrFI CCNGG 2 cut(s) 517, 564
BmsI GCATC 2 cut(s) 394, 548
BpuMI CCSGG 1 cut(s) 517
BsaI GGTCTC 1 cut(s) 506
Bsc4I CCNNNNNNNGG 1 cut(s) 341
Bse1I ACTGG 1 cut(s) 414
BseBI CCWGG 1 cut(s) 564
BseGI GGATG 3 cut(s) 248, 271, 472
BseLI CCNNNNNNNGG 1 cut(s) 341
BseNI ACTGG 1 cut(s) 414
BseXI GCAGC 4 cut(s) 66, 88, 218, 636
Bsh1236I CGCG 1 cut(s) 318
BsiSI CCGG 1 cut(s) 516
BslI CCNNNNNNNGG 1 cut(s) 341
BsmAI GTCTC 2 cut(s) 274, 506
Bso31I GGTCTC 1 cut(s) 506
Bsp143I GATC 3 cut(s) 313, 375, 685
BspACI CCGC 1 cut(s) 653
BspFNI CGCG 1 cut(s) 318
BspTNI GGTCTC 1 cut(s) 506
BsrI ACTGG 1 cut(s) 414
BssMI GATC 3 cut(s) 313, 375, 685
Bst2UI CCWGG 1 cut(s) 564
Bst4CI ACNGT 3 cut(s) 72, 309, 605
Bst6I CTCTTC 2 cut(s) 297, 504
BstC8I GCNNGC 1 cut(s) 343
BstF5I GGATG 3 cut(s) 248, 271, 472
BstFNI CGCG 1 cut(s) 318
BstKTI GATC 3 cut(s) 316, 378, 688
BstMAI GTCTC 2 cut(s) 274, 506
BstMBI GATC 3 cut(s) 313, 375, 685
BstMWI GCNNNNNNNGC 1 cut(s) 110
BstNI CCWGG 1 cut(s) 564
BstNSI RCATGY 1 cut(s) 423
BstSCI CCNGG 2 cut(s) 515, 562
BstSFI CTRYAG 1 cut(s) 12
BstUI CGCG 1 cut(s) 318
BstV1I GCAGC 4 cut(s) 66, 88, 218, 636
BtsCI GGATG 3 cut(s) 248, 271, 472
BtsIMutI CAGTG 1 cut(s) 421
Cac8I GCNNGC 1 cut(s) 343
Csp6I GTAC 1 cut(s) 606
CviAII CATG 9 cut(s) 139, 238, 257, 277, 338, 355, 420, 452, 689
CviJI RGCY 5 cut(s) 11, 113, 345, 372, 649
CviKI_1 RGCY 5 cut(s) 11, 113, 345, 372, 649
CviQI GTAC 1 cut(s) 606
DpnI GATC 3 cut(s) 315, 377, 687
DpnII GATC 3 cut(s) 313, 375, 685
DraI TTTAAA 1 cut(s) 573
Eam1104I CTCTTC 2 cut(s) 297, 504
EarI CTCTTC 2 cut(s) 297, 504
Eco31I GGTCTC 1 cut(s) 506
EcoRII CCWGG 1 cut(s) 562
EcoT22I ATGCAT 1 cut(s) 48
FaeI CATG 9 cut(s) 142, 241, 260, 280, 341, 358, 423, 455, 692
FatI CATG 9 cut(s) 138, 237, 256, 276, 337, 354, 419, 451, 688
FbaI TGATCA 1 cut(s) 685
Fnu4HI GCNGC 5 cut(s) 55, 102, 207, 650, 653
FokI GGATG 3 cut(s) 255, 278, 459
Fsp4HI GCNGC 5 cut(s) 55, 102, 207, 650, 653
FspBI CTAG 1 cut(s) 296
GluI GCNGC 5 cut(s) 55, 102, 207, 650, 653
HapII CCGG 1 cut(s) 516
Hin1II CATG 9 cut(s) 142, 241, 260, 280, 341, 358, 423, 455, 692
HinfI GANTC 3 cut(s) 158, 405, 457
HpaII CCGG 1 cut(s) 516
HphI GGTGA 2 cut(s) 92, 403
Hpy166II GTNNAC 2 cut(s) 271, 546
Hpy188I TCNGA 2 cut(s) 63, 366
Hpy188III TCNNGA 3 cut(s) 155, 389, 659
Hpy8I GTNNAC 2 cut(s) 271, 546
HpyAV CCTTC 1 cut(s) 217
HpyCH4III ACNGT 3 cut(s) 72, 309, 605
HpyCH4V TGCA 6 cut(s) 46, 206, 256, 385, 419, 600
HpyF10VI GCNNNNNNNGC 1 cut(s) 110
Hsp92II CATG 9 cut(s) 142, 241, 260, 280, 341, 358, 423, 455, 692
Ksp22I TGATCA 1 cut(s) 685
Kzo9I GATC 3 cut(s) 313, 375, 685
LpnPI CCDG 9 cut(s) 327, 374, 386, 427, 512, 529, 549, 576, 627
Lsp1109I GCAGC 4 cut(s) 66, 88, 218, 636
LweI GCATC 2 cut(s) 394, 548
MaeI CTAG 1 cut(s) 296
MaeIII GTNAC 1 cut(s) 454
MalI GATC 3 cut(s) 315, 377, 687
MboI GATC 3 cut(s) 313, 375, 685
MboII GAAGA 8 cut(s) 17, 76, 141, 145, 284, 400, 521, 604
MluCI AATT 4 cut(s) 227, 500, 638, 662
MlyI GAGTC 2 cut(s) 152, 451
MmeI TCCRAC 1 cut(s) 598
MnlI CCTC 9 cut(s) 76, 226, 253, 300, 345, 395, 526, 545, 575
Mph1103I ATGCAT 1 cut(s) 48
MseI TTAA 4 cut(s) 300, 327, 395, 572
MspI CCGG 1 cut(s) 516
MspR9I CCNGG 2 cut(s) 517, 564
MvaI CCWGG 1 cut(s) 564
MvnI CGCG 1 cut(s) 318
MwoI GCNNNNNNNGC 1 cut(s) 110
NciI CCSGG 1 cut(s) 517
NdeII GATC 3 cut(s) 313, 375, 685
NlaIII CATG 9 cut(s) 142, 241, 260, 280, 341, 358, 423, 455, 692
NmuCI GTSAC 1 cut(s) 454
NsiI ATGCAT 1 cut(s) 48
NspI RCATGY 1 cut(s) 423
PfeI GAWTC 1 cut(s) 405
PkrI GCNGC 5 cut(s) 56, 103, 208, 651, 654
PleI GAGTC 2 cut(s) 152, 451
PpsI GAGTC 2 cut(s) 152, 451
Psp6I CCWGG 1 cut(s) 562
PspGI CCWGG 1 cut(s) 562
RsaI GTAC 1 cut(s) 607
RsaNI GTAC 1 cut(s) 606
SaqAI TTAA 4 cut(s) 300, 327, 395, 572
SatI GCNGC 5 cut(s) 55, 102, 207, 650, 653
Sau3AI GATC 3 cut(s) 313, 375, 685
SchI GAGTC 2 cut(s) 152, 451
ScrFI CCNGG 2 cut(s) 517, 564
SetI ASST 4 cut(s) 169, 264, 635, 651
SfaNI GCATC 2 cut(s) 394, 548
SfcI CTRYAG 1 cut(s) 12
Sse9I AATT 4 cut(s) 227, 500, 638, 662
SsiI CCGC 1 cut(s) 653
SspMI CTAG 1 cut(s) 296
StyD4I CCNGG 2 cut(s) 515, 562
TaaI ACNGT 3 cut(s) 72, 309, 605
TasI AATT 4 cut(s) 227, 500, 638, 662
TauI GCSGC 1 cut(s) 655
TfiI GAWTC 1 cut(s) 405
Tru1I TTAA 4 cut(s) 300, 327, 395, 572
Tru9I TTAA 4 cut(s) 300, 327, 395, 572
TscAI CASTG 1 cut(s) 421
TseFI GTSAC 1 cut(s) 454
TseI GCWGC 4 cut(s) 54, 101, 206, 649
Tsp45I GTSAC 1 cut(s) 454
TspDTI ATGAA 3 cut(s) 343, 440, 657
TspRI CASTG 1 cut(s) 421
XapI RAATTY 2 cut(s) 638, 662
XceI RCATGY 1 cut(s) 423
XcmI CCANNNNNNNNNTGG 1 cut(s) 483
XspI CTAG 1 cut(s) 296
Zsp2I ATGCAT 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.