Rh5BG171700

At4g26485-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000364
Physical Location & Seq
Forward (+)
17997597 .. 18014602
17006 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG171700.1

Sequence Viewer

Length: 642 bp
ATGGTTGCTACTTCTCTTGACTCTAAAGAGTCAGTAATGGTCAGATACTCAAATGCAGCACCAAGCAACTTGGAGGAATTAGAGGACATGGGATGCTTAATCTTGCATGAGGTGGATGTCCACACCATGAGACAGCACCCTCTTCTAGTTAATCAACTGTTTGATCGCGTAGTCTTTAACTTTCCTCATGCTGGCTTCATTTTCATGGAAAATCAGATGAGCCAGATCAAGTTGCATCAGGATTTGGTGGGGGGATTCTTCACCAGTGCATGTGAAATGCTGAAAGAAAGTGGAGAAGTTCATGTGACTCACAAGACCTCACATCCATTCAGTAAGTGGGAGATAGTGAAATTAGCAGAAGAAGCTGGGTTATATCTGGTTGAGGAAGCATCGTTTACAAGAGGGGAATATCCCGGTTATTTAAACAAGAGAGGAAGTGGGAAGAAATGCAACCACACATTTCCTGTTGGACAATGTAACACCTACAAATTTGCCAAGCTGCCGCTTCTTGAATTTTCATTCACACCATTATATGATCATATATGGAAGAACAATATTGAGACACATCAAAACTTGAAAGGATCAAACGTTGTTCAAATGGATCTTGAAAGGAACAAGTTGAGCTGGAAAACTCTTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2431

Protein Analysis

213

Amino Acids

24.44

Weight (kDa)

6.25

Isoelectric Point (pI)

36.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BMT5-like PF10354 1 - 144 1.6e-41 rRNA (uridine-N3-)-methyltransferase BTM5-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000364)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26485
fragaria_vesca FvH4_3g14860 FvH4_3g14860 FvH4_3g14861 FvH4_3g14862 FvH4_3g14862 FvH4_3g14880 FvH4_3g14880 FvH4_3g14890 FvH4_3g14891 FvH4_3g14892 FvH4_3g14901 FvH4_3g14902
malus_domestica MD05G1233500.v1.1 MD05G1233600.v1.1 MD10G1209900.v1.1 MD10G1210000.v1.1 MD10G1210100.v1.1 MD10G1210300.v1.1 MD10G1210400.v1.1
prunus_persica Prupe.4G132900_v2.0.a1 Prupe.4G133200_v2.0.a1 Prupe.4G133200_v2.0.a1 Prupe.4G133200_v2.0.a1 Prupe.4G133300_v2.0.a1 Prupe.4G133300_v2.0.a1 Prupe.4G133400_v2.0.a1 Prupe.4G133500_v2.0.a1 Prupe.4G133500_v2.0.a1 Prupe.4G133600_v2.0.a1 Prupe.4G133600_v2.0.a1
pyrus_communis pycom05g21110 pycom05g21120 pycom10g17840
rosa_chinensis RchiOBHm_Chr5g0024361 RchiOBHm_Chr5g0024391 RchiOBHm_Chr5g0024411 RchiOBHm_Chr5g0024431 RchiOBHm_Chr5g0024451 RchiOBHm_Chr5g0024461 RchiOBHm_Chr5g0024471 RchiOBHm_Chr5g0024481 RchiOBHm_Chr5g0024501 RchiOBHm_Chr5g0024511
rosa_laevigata RLG00000032799 RLG00000032800 RLG00000032801 RLG00000032802 RLG00000032803
rosa_multiflora Rmu_sc0000761.1_g000010 Rmu_sc0000761.1_g000014 Rmu_sc0000761.1_g000018 Rmu_sc0000761.1_g000025 Rmu_sc0005861.1_g000002 Rmu_sc0005861.1_g000004 Rmu_sc0005861.1_g000007 Rmu_sc0011809.1_g000001 Rmu_sc0011809.1_g000006
rosa_roxburghii Rroxscaffold_1G00054740 Rroxscaffold_1G00054750 Rroxscaffold_1G00054760 Rroxscaffold_1G00054770 Rroxscaffold_1G00054780 Rroxscaffold_1G00054790 Rroxscaffold_1G00054840 Rroxscaffold_1G00055860 Rroxscaffold_3G00237770 Rroxscaffold_6G00389330
rosa_rugosa Rorug05G0083300 Rorug05G0083400 Rorug05G0083400
rosa_samantha Rh5AG174100 Rh5AG174300 Rh5AG174600 Rh5AG174700 Rh5AG175000 Rh5AG175300 Rh5BG171000 Rh5BG171400 Rh5BG171500 Rh5BG171600 Rh5BG171700 Rh5BG172100 Rh5BG172300 Rh5BG172500 Rh5CG187400 Rh5CG187700 Rh5CG187900 Rh5CG188000 Rh5CG188200 Rh5CG188400 Rh5CG188500 Rh5CG188600 Rh5DG173200 Rh5DG173400 Rh5DG173500 Rh5DG173700 Rh5DG173900 Rh5DG174000 Rh5DG174100
rosa_wichuraiana Rw5G015700 Rw5G015730 Rw5G015740 Rw5G015770 Rw5G015790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 168
AciI CCGC 1 cut(s) 503
AclI AACGTT 1 cut(s) 588
AclWI GGATC 2 cut(s) 589, 609
AcsI RAATTY 2 cut(s) 488, 512
AfiI CCNNNNNNNGG 1 cut(s) 191
AgsI TTSAA 4 cut(s) 512, 577, 596, 608
AluBI AGCT 3 cut(s) 365, 499, 624
AluI AGCT 3 cut(s) 365, 499, 624
Alw26I GTCTC 2 cut(s) 124, 554
AlwI GGATC 2 cut(s) 589, 609
ApeKI GCWGC 2 cut(s) 56, 499
ApoI RAATTY 2 cut(s) 488, 512
AsuC2I CCSGG 1 cut(s) 414
AsuHPI GGTGA 1 cut(s) 253
BbvI GCAGC 2 cut(s) 68, 486
BclI TGATCA 1 cut(s) 535
BcnI CCSGG 1 cut(s) 414
BcoDI GTCTC 2 cut(s) 124, 554
BfaI CTAG 1 cut(s) 146
BisI GCNGC 3 cut(s) 57, 500, 503
BlsI GCNGC 3 cut(s) 58, 501, 504
Bme1390I CCNGG 1 cut(s) 414
BmrFI CCNGG 1 cut(s) 414
BmsI GCATC 3 cut(s) 83, 244, 398
BpuMI CCSGG 1 cut(s) 414
Bsc4I CCNNNNNNNGG 1 cut(s) 191
Bse1I ACTGG 1 cut(s) 264
BseGI GGATG 3 cut(s) 98, 121, 322
BseLI CCNNNNNNNGG 1 cut(s) 191
BseNI ACTGG 1 cut(s) 264
BseXI GCAGC 2 cut(s) 68, 486
BseYI CCCAGC 1 cut(s) 365
Bsh1236I CGCG 1 cut(s) 168
BsiSI CCGG 1 cut(s) 414
BslI CCNNNNNNNGG 1 cut(s) 191
BsmAI GTCTC 2 cut(s) 124, 554
Bsp143I GATC 5 cut(s) 163, 225, 535, 581, 601
BspACI CCGC 1 cut(s) 503
BspFNI CGCG 1 cut(s) 168
BspPI GGATC 2 cut(s) 589, 609
BsrI ACTGG 1 cut(s) 264
BssMI GATC 5 cut(s) 163, 225, 535, 581, 601
Bst4CI ACNGT 1 cut(s) 159
Bst6I CTCTTC 1 cut(s) 147
BstC8I GCNNGC 1 cut(s) 193
BstF5I GGATG 3 cut(s) 98, 121, 322
BstFNI CGCG 1 cut(s) 168
BstKTI GATC 5 cut(s) 166, 228, 538, 584, 604
BstMAI GTCTC 2 cut(s) 124, 554
BstMBI GATC 5 cut(s) 163, 225, 535, 581, 601
BstMWI GCNNNNNNNGC 1 cut(s) 362
BstNSI RCATGY 1 cut(s) 273
BstSCI CCNGG 1 cut(s) 412
BstUI CGCG 1 cut(s) 168
BstV1I GCAGC 2 cut(s) 68, 486
BstX2I RGATCY 1 cut(s) 601
BstYI RGATCY 1 cut(s) 601
BtsCI GGATG 3 cut(s) 98, 121, 322
BtsIMutI CAGTG 1 cut(s) 271
Cac8I GCNNGC 1 cut(s) 193
CviAII CATG 7 cut(s) 88, 107, 127, 188, 205, 270, 302
CviJI RGCY 5 cut(s) 195, 222, 365, 499, 624
CviKI_1 RGCY 5 cut(s) 195, 222, 365, 499, 624
DpnI GATC 5 cut(s) 165, 227, 537, 583, 603
DpnII GATC 5 cut(s) 163, 225, 535, 581, 601
DraI TTTAAA 1 cut(s) 423
Eam1104I CTCTTC 1 cut(s) 147
EarI CTCTTC 1 cut(s) 147
FaeI CATG 7 cut(s) 91, 110, 130, 191, 208, 273, 305
FatI CATG 7 cut(s) 87, 106, 126, 187, 204, 269, 301
FbaI TGATCA 1 cut(s) 535
Fnu4HI GCNGC 3 cut(s) 57, 500, 503
FokI GGATG 3 cut(s) 105, 128, 309
Fsp4HI GCNGC 3 cut(s) 57, 500, 503
FspBI CTAG 1 cut(s) 146
GluI GCNGC 3 cut(s) 57, 500, 503
GsaI CCCAGC 1 cut(s) 369
HapII CCGG 1 cut(s) 414
Hin1II CATG 7 cut(s) 91, 110, 130, 191, 208, 273, 305
HinfI GANTC 4 cut(s) 20, 29, 255, 307
HpaII CCGG 1 cut(s) 414
HphI GGTGA 1 cut(s) 253
Hpy166II GTNNAC 2 cut(s) 121, 396
Hpy188I TCNGA 2 cut(s) 44, 216
Hpy188III TCNNGA 4 cut(s) 17, 239, 509, 605
Hpy8I GTNNAC 2 cut(s) 121, 396
HpyCH4III ACNGT 1 cut(s) 159
HpyCH4IV ACGT 1 cut(s) 588
HpyCH4V TGCA 5 cut(s) 56, 106, 235, 269, 450
HpyF10VI GCNNNNNNNGC 1 cut(s) 362
HpySE526I ACGT 1 cut(s) 588
Hsp92II CATG 7 cut(s) 91, 110, 130, 191, 208, 273, 305
Ksp22I TGATCA 1 cut(s) 535
Kzo9I GATC 5 cut(s) 163, 225, 535, 581, 601
LpnPI CCDG 9 cut(s) 177, 224, 236, 277, 351, 362, 427, 477, 610
Lsp1109I GCAGC 2 cut(s) 68, 486
LweI GCATC 3 cut(s) 83, 244, 398
MaeI CTAG 1 cut(s) 146
MaeII ACGT 1 cut(s) 588
MaeIII GTNAC 2 cut(s) 304, 476
MalI GATC 5 cut(s) 165, 227, 537, 583, 603
MboI GATC 5 cut(s) 163, 225, 535, 581, 601
MboII GAAGA 5 cut(s) 134, 250, 371, 454, 559
MflI RGATCY 1 cut(s) 601
MluCI AATT 4 cut(s) 77, 350, 488, 512
MlyI GAGTC 3 cut(s) 14, 38, 301
MmeI TCCRAC 1 cut(s) 448
MnlI CCTC 9 cut(s) 67, 76, 103, 150, 195, 328, 376, 395, 425
MseI TTAA 4 cut(s) 98, 150, 177, 422
MslI CAYNNNNRTG 1 cut(s) 203
MspI CCGG 1 cut(s) 414
MspR9I CCNGG 1 cut(s) 414
MvnI CGCG 1 cut(s) 168
MwoI GCNNNNNNNGC 1 cut(s) 362
NciI CCSGG 1 cut(s) 414
NdeII GATC 5 cut(s) 163, 225, 535, 581, 601
NlaIII CATG 7 cut(s) 91, 110, 130, 191, 208, 273, 305
NmuCI GTSAC 1 cut(s) 304
NspI RCATGY 1 cut(s) 273
PfeI GAWTC 1 cut(s) 255
PkrI GCNGC 3 cut(s) 58, 501, 504
PleI GAGTC 3 cut(s) 14, 37, 301
PpsI GAGTC 3 cut(s) 14, 37, 301
Psp1406I AACGTT 1 cut(s) 588
PspFI CCCAGC 1 cut(s) 365
PsuI RGATCY 1 cut(s) 601
RseI CAYNNNNRTG 1 cut(s) 203
SaqAI TTAA 4 cut(s) 98, 150, 177, 422
SatI GCNGC 3 cut(s) 57, 500, 503
Sau3AI GATC 5 cut(s) 163, 225, 535, 581, 601
SchI GAGTC 3 cut(s) 14, 38, 301
ScrFI CCNGG 1 cut(s) 414
SetI ASST 7 cut(s) 114, 320, 367, 485, 501, 591, 626
SfaNI GCATC 3 cut(s) 83, 244, 398
SmiMI CAYNNNNRTG 1 cut(s) 203
Sse9I AATT 4 cut(s) 77, 350, 488, 512
SsiI CCGC 1 cut(s) 503
SspI AATATT 1 cut(s) 556
SspMI CTAG 1 cut(s) 146
StyD4I CCNGG 1 cut(s) 412
TaaI ACNGT 1 cut(s) 159
TaiI ACGT 1 cut(s) 591
TasI AATT 4 cut(s) 77, 350, 488, 512
TauI GCSGC 1 cut(s) 505
TfiI GAWTC 1 cut(s) 255
Tru1I TTAA 4 cut(s) 98, 150, 177, 422
Tru9I TTAA 4 cut(s) 98, 150, 177, 422
TscAI CASTG 1 cut(s) 271
TseFI GTSAC 1 cut(s) 304
TseI GCWGC 2 cut(s) 56, 499
Tsp45I GTSAC 1 cut(s) 304
TspDTI ATGAA 4 cut(s) 187, 193, 290, 507
TspRI CASTG 1 cut(s) 271
XapI RAATTY 2 cut(s) 488, 512
XceI RCATGY 1 cut(s) 273
XcmI CCANNNNNNNNNTGG 1 cut(s) 333
XspI CTAG 1 cut(s) 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.