pycom05g21110

At4g26485-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0000364
Physical Location & Seq
Forward (+)
23808724 .. 23810080
1357 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g21110.2

Sequence Viewer

Length: 726 bp
ATGGAAGTGTTTAGCTTTGAGAGAAGGATTAAGAATTACAGCAACTATCAGAATATACTGTTGGTCGGAGAAGGCGACTTCTCTTTTGCCGTTTGCTTAGCCAGAGCCTTTGACTTCGCTGCCAACATGGTTGCCACTTCTCGTGACACCAGAGAGTCGTTAATGGTGGAGTATTCAAAAGCTATGAGTAATGTGGAGGAATTAAAGTCCAGGGAATGCACTGTATTGCATGAGGTGGATGTCCACTATATGAGCAAGCACCCTTGCTTGATCAACGTGCGCTTTGATCGCATAATATATAATTTTCCTCATGCCGGTTACTTGAAGGGTTCCCGTTCCTGTGAACGCGAAATGTACCAGATTTGGTATCATCAGGATTTGGTTAGGGGATTCTTCGAGAATGCAAGGGAAATGCTGACGAGAGTAGGAGAAATTCATGTGACACACAAGACAACATATCCTTTCAGTGAATGGAATATAGTGGATTTAGCTTATCAGGCTGGATTGATTTTGGTTCATAAAGAACCATTCTCGAAATGGGATTATCCAGGCTACGAAAATAAGAGAGGGGCTGGGATGTTTGACCAAACTTTTCCGGTTGGAATGTGTAGCACCTACAAATTTGCCAAGATGTTGGACCATTCTACCACTTCCGGTTTCCACCTTGGAACTACTTCTTCGGGTCCATGGCCTAGATATTGTGGAATTTGGGGTCCTCACATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2431

Protein Analysis

242

Amino Acids

28.05

Weight (kDa)

6.83

Isoelectric Point (pI)

44.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000364)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26485
fragaria_vesca FvH4_3g14860 FvH4_3g14860 FvH4_3g14861 FvH4_3g14862 FvH4_3g14862 FvH4_3g14880 FvH4_3g14880 FvH4_3g14890 FvH4_3g14891 FvH4_3g14892 FvH4_3g14901 FvH4_3g14902
malus_domestica MD05G1233500.v1.1 MD05G1233600.v1.1 MD10G1209900.v1.1 MD10G1210000.v1.1 MD10G1210100.v1.1 MD10G1210300.v1.1 MD10G1210400.v1.1
prunus_persica Prupe.4G132900_v2.0.a1 Prupe.4G133200_v2.0.a1 Prupe.4G133200_v2.0.a1 Prupe.4G133200_v2.0.a1 Prupe.4G133300_v2.0.a1 Prupe.4G133300_v2.0.a1 Prupe.4G133400_v2.0.a1 Prupe.4G133500_v2.0.a1 Prupe.4G133500_v2.0.a1 Prupe.4G133600_v2.0.a1 Prupe.4G133600_v2.0.a1
pyrus_communis pycom05g21110 pycom05g21120 pycom10g17840
rosa_chinensis RchiOBHm_Chr5g0024361 RchiOBHm_Chr5g0024391 RchiOBHm_Chr5g0024411 RchiOBHm_Chr5g0024431 RchiOBHm_Chr5g0024451 RchiOBHm_Chr5g0024461 RchiOBHm_Chr5g0024471 RchiOBHm_Chr5g0024481 RchiOBHm_Chr5g0024501 RchiOBHm_Chr5g0024511
rosa_laevigata RLG00000032799 RLG00000032800 RLG00000032801 RLG00000032802 RLG00000032803
rosa_multiflora Rmu_sc0000761.1_g000010 Rmu_sc0000761.1_g000014 Rmu_sc0000761.1_g000018 Rmu_sc0000761.1_g000025 Rmu_sc0005861.1_g000002 Rmu_sc0005861.1_g000004 Rmu_sc0005861.1_g000007 Rmu_sc0011809.1_g000001 Rmu_sc0011809.1_g000006
rosa_roxburghii Rroxscaffold_1G00054740 Rroxscaffold_1G00054750 Rroxscaffold_1G00054760 Rroxscaffold_1G00054770 Rroxscaffold_1G00054780 Rroxscaffold_1G00054790 Rroxscaffold_1G00054840 Rroxscaffold_1G00055860 Rroxscaffold_3G00237770 Rroxscaffold_6G00389330
rosa_rugosa Rorug05G0083300 Rorug05G0083400 Rorug05G0083400
rosa_samantha Rh5AG174100 Rh5AG174300 Rh5AG174600 Rh5AG174700 Rh5AG175000 Rh5AG175300 Rh5BG171000 Rh5BG171400 Rh5BG171500 Rh5BG171600 Rh5BG171700 Rh5BG172100 Rh5BG172300 Rh5BG172500 Rh5CG187400 Rh5CG187700 Rh5CG187900 Rh5CG188000 Rh5CG188200 Rh5CG188400 Rh5CG188500 Rh5CG188600 Rh5DG173200 Rh5DG173400 Rh5DG173500 Rh5DG173700 Rh5DG173900 Rh5DG174000 Rh5DG174100
rosa_wichuraiana Rw5G015700 Rw5G015730 Rw5G015740 Rw5G015770 Rw5G015790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 348
AcsI RAATTY 3 cut(s) 432, 620, 705
AfaI GTAC 1 cut(s) 356
AfiI CCNNNNNNNGG 1 cut(s) 314
AflIII ACRYGT 1 cut(s) 720
AgsI TTSAA 2 cut(s) 177, 325
AjnI CCWGG 2 cut(s) 209, 547
AjuI GAANNNNNNNTTGG 2 cut(s) 44, 76
AluBI AGCT 3 cut(s) 15, 182, 491
AluI AGCT 3 cut(s) 15, 182, 491
AoxI GGCC 1 cut(s) 689
ApeKI GCWGC 1 cut(s) 119
ApoI RAATTY 3 cut(s) 432, 620, 705
ArsI GACNNNNNNTTYG 2 cut(s) 68, 100
Asp700I GAANNNNTTC 1 cut(s) 673
AspLEI GCGC 1 cut(s) 282
AspS9I GGNCC 3 cut(s) 637, 683, 713
AvaII GGWCC 3 cut(s) 637, 683, 713
BauI CACGAG 1 cut(s) 141
BbvI GCAGC 1 cut(s) 106
BceAI ACGGC 1 cut(s) 74
BciT130I CCWGG 2 cut(s) 211, 549
BclI TGATCA 1 cut(s) 270
BfaI CTAG 1 cut(s) 693
BisI GCNGC 1 cut(s) 120
BlpI GCTNAGC 1 cut(s) 97
BlsI GCNGC 1 cut(s) 121
Bme1390I CCNGG 2 cut(s) 211, 549
Bme18I GGWCC 3 cut(s) 637, 683, 713
BmgT120I GGNCC 3 cut(s) 637, 683, 713
BmiI GGNNCC 3 cut(s) 331, 684, 714
BmrFI CCNGG 2 cut(s) 211, 549
Bpu1102I GCTNAGC 1 cut(s) 97
BsaJI CCNNGG 3 cut(s) 210, 664, 686
BsaWI WCCGGW 2 cut(s) 595, 653
Bsc4I CCNNNNNNNGG 1 cut(s) 314
Bse118I RCCGGY 1 cut(s) 314
BseBI CCWGG 2 cut(s) 211, 549
BseDI CCNNGG 3 cut(s) 210, 664, 686
BseGI GGATG 2 cut(s) 244, 582
BseLI CCNNNNNNNGG 1 cut(s) 314
BseXI GCAGC 1 cut(s) 106
BseYI CCCAGC 1 cut(s) 572
Bsh1236I CGCG 1 cut(s) 348
BshFI GGCC 1 cut(s) 691
BsiSI CCGG 3 cut(s) 315, 596, 654
BslI CCNNNNNNNGG 1 cut(s) 314
BsmI GAATGC 2 cut(s) 221, 406
BsnI GGCC 1 cut(s) 691
Bsp143I GATC 2 cut(s) 270, 286
Bsp1720I GCTNAGC 1 cut(s) 97
Bsp19I CCATGG 1 cut(s) 686
BspANI GGCC 1 cut(s) 691
BspFNI CGCG 1 cut(s) 348
BspLI GGNNCC 3 cut(s) 331, 684, 714
BsrFI RCCGGY 1 cut(s) 314
BssAI RCCGGY 1 cut(s) 314
BssECI CCNNGG 3 cut(s) 210, 664, 686
BssMI GATC 2 cut(s) 270, 286
BssSI CACGAG 1 cut(s) 141
BssT1I CCWWGG 2 cut(s) 664, 686
Bst2BI CACGAG 1 cut(s) 141
Bst2UI CCWGG 2 cut(s) 211, 549
Bst4CI ACNGT 2 cut(s) 60, 223
BstC8I GCNNGC 1 cut(s) 257
BstDEI CTNAG 1 cut(s) 97
BstDSI CCRYGG 1 cut(s) 686
BstF5I GGATG 2 cut(s) 244, 582
BstFNI CGCG 1 cut(s) 348
BstHHI GCGC 1 cut(s) 282
BstKTI GATC 2 cut(s) 273, 289
BstMBI GATC 2 cut(s) 270, 286
BstMWI GCNNNNNNNGC 2 cut(s) 288, 497
BstNI CCWGG 2 cut(s) 211, 549
BstNSI RCATGY 1 cut(s) 724
BstSCI CCNGG 2 cut(s) 209, 547
BstUI CGCG 1 cut(s) 348
BstV1I GCAGC 1 cut(s) 106
BstXI CCANNNNNNTGG 1 cut(s) 634
BsuRI GGCC 1 cut(s) 691
BtgI CCRYGG 1 cut(s) 686
BtsCI GGATG 2 cut(s) 244, 582
BtsIMutI CAGTG 2 cut(s) 219, 472
Cac8I GCNNGC 1 cut(s) 257
CfoI GCGC 1 cut(s) 282
Cfr10I RCCGGY 1 cut(s) 314
Cfr13I GGNCC 3 cut(s) 637, 683, 713
Csp6I GTAC 1 cut(s) 355
CviAII CATG 6 cut(s) 127, 230, 311, 437, 687, 721
CviJI RGCY 9 cut(s) 15, 101, 107, 182, 491, 500, 552, 572, 691
CviKI_1 RGCY 9 cut(s) 15, 101, 107, 182, 491, 500, 552, 572, 691
CviQI GTAC 1 cut(s) 355
DdeI CTNAG 1 cut(s) 97
DpnI GATC 2 cut(s) 272, 288
DpnII GATC 2 cut(s) 270, 286
Eco130I CCWWGG 2 cut(s) 664, 686
Eco47I GGWCC 3 cut(s) 637, 683, 713
EcoO109I RGGNCCY 1 cut(s) 713
EcoRII CCWGG 2 cut(s) 209, 547
EcoT14I CCWWGG 2 cut(s) 664, 686
ErhI CCWWGG 2 cut(s) 664, 686
FaeI CATG 6 cut(s) 130, 233, 314, 440, 690, 724
FatI CATG 6 cut(s) 126, 229, 310, 436, 686, 720
FbaI TGATCA 1 cut(s) 270
Fnu4HI GCNGC 1 cut(s) 120
FokI GGATG 2 cut(s) 251, 589
Fsp4HI GCNGC 1 cut(s) 120
FspBI CTAG 1 cut(s) 693
GlaI GCGC 1 cut(s) 281
GluI GCNGC 1 cut(s) 120
GsaI CCCAGC 1 cut(s) 576
HaeIII GGCC 1 cut(s) 691
HapII CCGG 3 cut(s) 315, 596, 654
HhaI GCGC 1 cut(s) 282
Hin1II CATG 6 cut(s) 130, 233, 314, 440, 690, 724
Hin6I GCGC 1 cut(s) 280
HinP1I GCGC 1 cut(s) 280
HinfI GANTC 2 cut(s) 155, 390
HpaII CCGG 3 cut(s) 315, 596, 654
Hpy166II GTNNAC 2 cut(s) 244, 344
Hpy188I TCNGA 2 cut(s) 51, 68
Hpy188III TCNNGA 4 cut(s) 143, 374, 397, 532
Hpy8I GTNNAC 2 cut(s) 244, 344
HpyAV CCTTC 3 cut(s) 18, 65, 319
HpyCH4III ACNGT 2 cut(s) 60, 223
HpyCH4IV ACGT 1 cut(s) 276
HpyCH4V TGCA 3 cut(s) 219, 229, 404
HpyF10VI GCNNNNNNNGC 2 cut(s) 288, 497
HpyF3I CTNAG 1 cut(s) 97
HpySE526I ACGT 1 cut(s) 276
Hsp92II CATG 6 cut(s) 130, 233, 314, 440, 690, 724
HspAI GCGC 1 cut(s) 280
Ksp22I TGATCA 1 cut(s) 270
Kzo9I GATC 2 cut(s) 270, 286
Lsp1109I GCAGC 1 cut(s) 106
MaeI CTAG 1 cut(s) 693
MaeII ACGT 1 cut(s) 276
MaeIII GTNAC 3 cut(s) 143, 317, 439
MalI GATC 2 cut(s) 272, 288
MboI GATC 2 cut(s) 270, 286
MboII GAAGA 2 cut(s) 385, 669
MluCI AATT 6 cut(s) 34, 200, 301, 432, 620, 705
MlyI GAGTC 1 cut(s) 164
MmeI TCCRAC 3 cut(s) 46, 580, 615
MnlI CCTC 5 cut(s) 190, 226, 318, 560, 726
MroXI GAANNNNTTC 1 cut(s) 673
MseI TTAA 3 cut(s) 30, 161, 203
MspI CCGG 3 cut(s) 315, 596, 654
MspR9I CCNGG 2 cut(s) 211, 549
Mva1269I GAATGC 2 cut(s) 221, 406
MvaI CCWGG 2 cut(s) 211, 549
MvnI CGCG 1 cut(s) 348
MwoI GCNNNNNNNGC 2 cut(s) 288, 497
NcoI CCATGG 1 cut(s) 686
NdeII GATC 2 cut(s) 270, 286
NlaIII CATG 6 cut(s) 130, 233, 314, 440, 690, 724
NlaIV GGNNCC 3 cut(s) 331, 684, 714
NmuCI GTSAC 2 cut(s) 143, 439
NspI RCATGY 1 cut(s) 724
PciI ACATGT 1 cut(s) 720
PcsI WCGNNNNNNNCGW 1 cut(s) 72
PctI GAATGC 2 cut(s) 221, 406
PdmI GAANNNNTTC 1 cut(s) 673
PfeI GAWTC 1 cut(s) 390
PkrI GCNGC 1 cut(s) 121
PleI GAGTC 1 cut(s) 163
PpsI GAGTC 1 cut(s) 163
PpuMI RGGWCCY 1 cut(s) 713
PscI ACATGT 1 cut(s) 720
Psp5II RGGWCCY 1 cut(s) 713
Psp6I CCWGG 2 cut(s) 209, 547
PspFI CCCAGC 1 cut(s) 572
PspGI CCWGG 2 cut(s) 209, 547
PspN4I GGNNCC 3 cut(s) 331, 684, 714
PspPI GGNCC 3 cut(s) 637, 683, 713
PspPPI RGGWCCY 1 cut(s) 713
RsaI GTAC 1 cut(s) 356
RsaNI GTAC 1 cut(s) 355
SaqAI TTAA 3 cut(s) 30, 161, 203
SatI GCNGC 1 cut(s) 120
Sau3AI GATC 2 cut(s) 270, 286
Sau96I GGNCC 3 cut(s) 637, 683, 713
SchI GAGTC 1 cut(s) 164
ScrFI CCNGG 2 cut(s) 211, 549
SetI ASST 7 cut(s) 17, 184, 237, 279, 493, 617, 666
SinI GGWCC 3 cut(s) 637, 683, 713
Sse9I AATT 6 cut(s) 34, 200, 301, 432, 620, 705
SspMI CTAG 1 cut(s) 693
StyD4I CCNGG 2 cut(s) 209, 547
StyI CCWWGG 2 cut(s) 664, 686
TaaI ACNGT 2 cut(s) 60, 223
TaiI ACGT 1 cut(s) 279
TaqI TCGA 2 cut(s) 396, 533
TasI AATT 6 cut(s) 34, 200, 301, 432, 620, 705
TfiI GAWTC 1 cut(s) 390
Tru1I TTAA 3 cut(s) 30, 161, 203
Tru9I TTAA 3 cut(s) 30, 161, 203
TscAI CASTG 2 cut(s) 226, 472
TseFI GTSAC 2 cut(s) 143, 439
TseI GCWGC 1 cut(s) 119
Tsp45I GTSAC 2 cut(s) 143, 439
TspDTI ATGAA 2 cut(s) 425, 506
TspRI CASTG 2 cut(s) 226, 472
VpaK11BI GGWCC 3 cut(s) 637, 683, 713
XapI RAATTY 3 cut(s) 432, 620, 705
XceI RCATGY 1 cut(s) 724
XcmI CCANNNNNNNNNTGG 1 cut(s) 534
XmnI GAANNNNTTC 1 cut(s) 673
XspI CTAG 1 cut(s) 693
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.