Rw5G015770

At4g26485-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000364
Physical Location & Seq
Reverse (-)
19616510 .. 19618004
1495 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G015770.1

Sequence Viewer

Length: 813 bp
ATGACGACTAAGAAGAACAAGAAATCTCAAGCTAAAAAGATCGATCAAGAGCAATTGCATGGCTTTGAGAAATGGATTAAGCACTACAGCAGCAACCAAACCATACTGCAAGTCGGAGAAGGAGACTTCTCGTTTGCTCTTTGCATAGCTAGACAATTTGGCTCTGATAGGAACATGATTGCAACTTCTCTCGACTCCAAAGGGGAGTTGATCAAATATTCAAAAGCTATGAGCAATTTGAGGGAGTTAGAGAGCAGAGGATGCCAAATTTTGCACGGGGTAGATGTCAACACCATGCTCCATCACCCTGAACTTATTACTAAACAGTTTGATCGAATAATTTATAACTTTCCTCATGCTGGTTACTTGAAAGGCCTCCGTCGTTCATCAGAAAAGAATAAGTCCCAAATTTTGTTGCATCAGATTTTGGTGAGGGGATACTTCATGAACTCACGGGAGATGCTGACTAAAAATGGAGAAATTCATGTCACACACAAGACAACATATCCTTTTAGTGAGTGGGAAATAGTAGAGTTAGCAGAGGAGGCTGAGTTATTCTTGGTTAATGAAGAAGAGTTTTACAAACTGGATTATCCGGGATATGAAAACAAGAGAGGAGATGGGATTTGCGACGAGTCATTCCCGGTTGGGAAGTCTAGCACCTTCATCTTTGCCAAGCGGTTGTACCCTAATACGAGGTTCCACCCAGGTACTTTGAGTATCAGTACATGGCCTGCTGATATAGTAGATATGGCTTGCACCTATTTAGATAGCTTGGAGATGAAGAAATCCAACCGCGGCCATAAAGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2431

Protein Analysis

270

Amino Acids

31.17

Weight (kDa)

8.51

Isoelectric Point (pI)

43.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BMT5-like PF10354 36 - 205 2.9e-49 rRNA (uridine-N3-)-methyltransferase BTM5-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000364)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26485
fragaria_vesca FvH4_3g14860 FvH4_3g14860 FvH4_3g14861 FvH4_3g14862 FvH4_3g14862 FvH4_3g14880 FvH4_3g14880 FvH4_3g14890 FvH4_3g14891 FvH4_3g14892 FvH4_3g14901 FvH4_3g14902
malus_domestica MD05G1233500.v1.1 MD05G1233600.v1.1 MD10G1209900.v1.1 MD10G1210000.v1.1 MD10G1210100.v1.1 MD10G1210300.v1.1 MD10G1210400.v1.1
prunus_persica Prupe.4G132900_v2.0.a1 Prupe.4G133200_v2.0.a1 Prupe.4G133200_v2.0.a1 Prupe.4G133200_v2.0.a1 Prupe.4G133300_v2.0.a1 Prupe.4G133300_v2.0.a1 Prupe.4G133400_v2.0.a1 Prupe.4G133500_v2.0.a1 Prupe.4G133500_v2.0.a1 Prupe.4G133600_v2.0.a1 Prupe.4G133600_v2.0.a1
pyrus_communis pycom05g21110 pycom05g21120 pycom10g17840
rosa_chinensis RchiOBHm_Chr5g0024361 RchiOBHm_Chr5g0024391 RchiOBHm_Chr5g0024411 RchiOBHm_Chr5g0024431 RchiOBHm_Chr5g0024451 RchiOBHm_Chr5g0024461 RchiOBHm_Chr5g0024471 RchiOBHm_Chr5g0024481 RchiOBHm_Chr5g0024501 RchiOBHm_Chr5g0024511
rosa_laevigata RLG00000032799 RLG00000032800 RLG00000032801 RLG00000032802 RLG00000032803
rosa_multiflora Rmu_sc0000761.1_g000010 Rmu_sc0000761.1_g000014 Rmu_sc0000761.1_g000018 Rmu_sc0000761.1_g000025 Rmu_sc0005861.1_g000002 Rmu_sc0005861.1_g000004 Rmu_sc0005861.1_g000007 Rmu_sc0011809.1_g000001 Rmu_sc0011809.1_g000006
rosa_roxburghii Rroxscaffold_1G00054740 Rroxscaffold_1G00054750 Rroxscaffold_1G00054760 Rroxscaffold_1G00054770 Rroxscaffold_1G00054780 Rroxscaffold_1G00054790 Rroxscaffold_1G00054840 Rroxscaffold_1G00055860 Rroxscaffold_3G00237770 Rroxscaffold_6G00389330
rosa_rugosa Rorug05G0083300 Rorug05G0083400 Rorug05G0083400
rosa_samantha Rh5AG174100 Rh5AG174300 Rh5AG174600 Rh5AG174700 Rh5AG175000 Rh5AG175300 Rh5BG171000 Rh5BG171400 Rh5BG171500 Rh5BG171600 Rh5BG171700 Rh5BG172100 Rh5BG172300 Rh5BG172500 Rh5CG187400 Rh5CG187700 Rh5CG187900 Rh5CG188000 Rh5CG188200 Rh5CG188400 Rh5CG188500 Rh5CG188600 Rh5DG173200 Rh5DG173400 Rh5DG173500 Rh5DG173700 Rh5DG173900 Rh5DG174000 Rh5DG174100
rosa_wichuraiana Rw5G015700 Rw5G015730 Rw5G015740 Rw5G015770 Rw5G015790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 345
AccII CGCG 1 cut(s) 798
AciI CCGC 3 cut(s) 679, 796, 798
AcoI YGGCCR 1 cut(s) 799
AcsI RAATTY 3 cut(s) 267, 408, 480
AfaI GTAC 3 cut(s) 686, 712, 727
AfiI CCNNNNNNNGG 1 cut(s) 359
AgsI TTSAA 2 cut(s) 222, 370
AjnI CCWGG 1 cut(s) 706
AluBI AGCT 4 cut(s) 32, 149, 227, 774
AluI AGCT 4 cut(s) 32, 149, 227, 774
Alw26I GTCTC 1 cut(s) 117
AoxI GGCC 3 cut(s) 373, 731, 799
ApeKI GCWGC 1 cut(s) 90
ApoI RAATTY 3 cut(s) 267, 408, 480
ArsI GACNNNNNNTTYG 2 cut(s) 116, 148
AsuC2I CCSGG 2 cut(s) 597, 644
AsuHPI GGTGA 2 cut(s) 296, 442
BbvI GCAGC 1 cut(s) 102
BccI CCATC 2 cut(s) 309, 614
BciT130I CCWGG 1 cut(s) 708
BciVI GTATCC 1 cut(s) 431
BclI TGATCA 1 cut(s) 210
BcnI CCSGG 2 cut(s) 597, 644
BcoDI GTCTC 1 cut(s) 117
BfaI CTAG 3 cut(s) 150, 657, 811
BfmI CTRYAG 1 cut(s) 85
BfuI GTATCC 1 cut(s) 431
BisI GCNGC 2 cut(s) 91, 799
BlsI GCNGC 2 cut(s) 92, 800
Bme1390I CCNGG 3 cut(s) 597, 644, 708
BmiI GGNNCC 1 cut(s) 701
BmrFI CCNGG 3 cut(s) 597, 644, 708
BmsI GCATC 3 cut(s) 251, 427, 450
BpuEI CTTGAG 1 cut(s) 12
BpuMI CCSGG 2 cut(s) 597, 644
Bsa29I ATCGAT 1 cut(s) 42
BsaJI CCNNGG 2 cut(s) 706, 796
BsaXI ACNNNNNCTCC 2 cut(s) 536, 566
Bsc4I CCNNNNNNNGG 1 cut(s) 359
Bse1I ACTGG 1 cut(s) 591
BseBI CCWGG 1 cut(s) 708
BseCI ATCGAT 1 cut(s) 42
BseDI CCNNGG 2 cut(s) 706, 796
BseGI GGATG 1 cut(s) 266
BseLI CCNNNNNNNGG 1 cut(s) 359
BseMII CTCAG 1 cut(s) 540
BseNI ACTGG 1 cut(s) 591
BseRI GAGGAG 2 cut(s) 557, 630
BseXI GCAGC 1 cut(s) 102
Bsh1236I CGCG 1 cut(s) 798
BshFI GGCC 3 cut(s) 375, 733, 801
BshVI ATCGAT 1 cut(s) 42
BsiSI CCGG 2 cut(s) 596, 644
BslFI GGGAC 1 cut(s) 388
BslI CCNNNNNNNGG 1 cut(s) 359
BsmAI GTCTC 1 cut(s) 117
BsmFI GGGAC 1 cut(s) 388
BsnI GGCC 3 cut(s) 375, 733, 801
Bsp143I GATC 4 cut(s) 39, 43, 210, 331
BspACI CCGC 3 cut(s) 679, 796, 798
BspANI GGCC 3 cut(s) 375, 733, 801
BspCNI CTCAG 1 cut(s) 541
BspDI ATCGAT 1 cut(s) 42
BspFNI CGCG 1 cut(s) 798
BspHI TCATGA 1 cut(s) 444
BspLI GGNNCC 1 cut(s) 701
BsrI ACTGG 1 cut(s) 591
BssECI CCNNGG 2 cut(s) 706, 796
BssMI GATC 4 cut(s) 39, 43, 210, 331
Bst2UI CCWGG 1 cut(s) 708
Bst4CI ACNGT 1 cut(s) 327
Bst6I CTCTTC 1 cut(s) 567
BstAPI GCANNNNNTGC 1 cut(s) 261
BstC8I GCNNGC 2 cut(s) 735, 757
BstDEI CTNAG 2 cut(s) 9, 549
BstDSI CCRYGG 1 cut(s) 796
BstF5I GGATG 1 cut(s) 266
BstFNI CGCG 1 cut(s) 798
BstKTI GATC 4 cut(s) 42, 46, 213, 334
BstMAI GTCTC 1 cut(s) 117
BstMBI GATC 4 cut(s) 39, 43, 210, 331
BstMWI GCNNNNNNNGC 2 cut(s) 261, 545
BstNI CCWGG 1 cut(s) 708
BstSCI CCNGG 3 cut(s) 595, 642, 706
BstSFI CTRYAG 1 cut(s) 85
BstUI CGCG 1 cut(s) 798
BstV1I GCAGC 1 cut(s) 102
Bsu15I ATCGAT 1 cut(s) 42
BsuI GTATCC 1 cut(s) 431
BsuRI GGCC 3 cut(s) 375, 733, 801
BsuTUI ATCGAT 1 cut(s) 42
BtgI CCRYGG 1 cut(s) 796
BtsCI GGATG 1 cut(s) 266
Cac8I GCNNGC 2 cut(s) 735, 757
CciI TCATGA 1 cut(s) 444
Cfr42I CCGCGG 1 cut(s) 799
ClaI ATCGAT 1 cut(s) 42
Csp6I GTAC 3 cut(s) 685, 711, 726
CviAII CATG 7 cut(s) 59, 175, 295, 356, 445, 485, 729
CviQI GTAC 3 cut(s) 685, 711, 726
DdeI CTNAG 2 cut(s) 9, 549
DpnI GATC 4 cut(s) 41, 45, 212, 333
DpnII GATC 4 cut(s) 39, 43, 210, 331
EaeI YGGCCR 1 cut(s) 799
Eam1104I CTCTTC 1 cut(s) 567
EarI CTCTTC 1 cut(s) 567
Eco147I AGGCCT 1 cut(s) 375
EcoRII CCWGG 1 cut(s) 706
FaeI CATG 7 cut(s) 62, 178, 298, 359, 448, 488, 732
FaqI GGGAC 1 cut(s) 388
FatI CATG 7 cut(s) 58, 174, 294, 355, 444, 484, 728
FbaI TGATCA 1 cut(s) 210
Fnu4HI GCNGC 2 cut(s) 91, 799
FokI GGATG 1 cut(s) 273
Fsp4HI GCNGC 2 cut(s) 91, 799
FspBI CTAG 3 cut(s) 150, 657, 811
GluI GCNGC 2 cut(s) 91, 799
HaeIII GGCC 3 cut(s) 375, 733, 801
HapII CCGG 2 cut(s) 596, 644
Hin1II CATG 7 cut(s) 62, 178, 298, 359, 448, 488, 732
HincII GTYRAC 1 cut(s) 289
HindII GTYRAC 1 cut(s) 289
HinfI GANTC 2 cut(s) 194, 635
HpaII CCGG 2 cut(s) 596, 644
HphI GGTGA 2 cut(s) 296, 442
Hpy166II GTNNAC 1 cut(s) 289
Hpy188I TCNGA 4 cut(s) 116, 166, 391, 423
Hpy188III TCNNGA 3 cut(s) 47, 191, 445
Hpy8I GTNNAC 1 cut(s) 289
Hpy99I CGWCG 2 cut(s) 384, 635
HpyAV CCTTC 2 cut(s) 113, 673
HpyCH4III ACNGT 1 cut(s) 327
HpyCH4V TGCA 7 cut(s) 58, 109, 144, 182, 274, 418, 759
HpyF10VI GCNNNNNNNGC 2 cut(s) 261, 545
HpyF3I CTNAG 2 cut(s) 9, 549
Hsp92II CATG 7 cut(s) 62, 178, 298, 359, 448, 488, 732
Ksp22I TGATCA 1 cut(s) 210
KspI CCGCGG 1 cut(s) 799
Kzo9I GATC 4 cut(s) 39, 43, 210, 331
LmnI GCTCC 1 cut(s) 303
LpnPI CCDG 8 cut(s) 321, 345, 572, 609, 657, 693, 720, 747
Lsp1109I GCAGC 1 cut(s) 102
LweI GCATC 3 cut(s) 251, 427, 450
MaeI CTAG 3 cut(s) 150, 657, 811
MaeIII GTNAC 2 cut(s) 362, 487
MalI GATC 4 cut(s) 41, 45, 212, 333
MboI GATC 4 cut(s) 39, 43, 210, 331
MboII GAAGA 4 cut(s) 25, 581, 584, 796
MfeI CAATTG 1 cut(s) 53
MluCI AATT 7 cut(s) 53, 155, 235, 267, 339, 408, 480
MlyI GAGTC 2 cut(s) 188, 644
MmeI TCCRAC 1 cut(s) 94
MnlI CCTC 9 cut(s) 234, 251, 363, 386, 426, 535, 538, 608, 690
MseI TTAA 2 cut(s) 78, 564
MspA1I CMGCKG 1 cut(s) 798
MspI CCGG 2 cut(s) 596, 644
MspR9I CCNGG 3 cut(s) 597, 644, 708
MunI CAATTG 1 cut(s) 53
MvaI CCWGG 1 cut(s) 708
MvnI CGCG 1 cut(s) 798
MwoI GCNNNNNNNGC 2 cut(s) 261, 545
NciI CCSGG 2 cut(s) 597, 644
NdeII GATC 4 cut(s) 39, 43, 210, 331
NlaIII CATG 7 cut(s) 62, 178, 298, 359, 448, 488, 732
NlaIV GGNNCC 1 cut(s) 701
NmuCI GTSAC 1 cut(s) 487
PagI TCATGA 1 cut(s) 444
PceI AGGCCT 1 cut(s) 375
PfoI TCCNGGA 1 cut(s) 595
PkrI GCNGC 2 cut(s) 92, 800
PleI GAGTC 2 cut(s) 188, 643
PpsI GAGTC 2 cut(s) 188, 643
PsiI TTATAA 1 cut(s) 345
Psp6I CCWGG 1 cut(s) 706
PspGI CCWGG 1 cut(s) 706
PspN4I GGNNCC 1 cut(s) 701
RsaI GTAC 3 cut(s) 686, 712, 727
RsaNI GTAC 3 cut(s) 685, 711, 726
SacII CCGCGG 1 cut(s) 799
SaqAI TTAA 2 cut(s) 78, 564
SatI GCNGC 2 cut(s) 91, 799
Sau3AI GATC 4 cut(s) 39, 43, 210, 331
SchI GAGTC 2 cut(s) 188, 644
ScrFI CCNGG 3 cut(s) 597, 644, 708
SetI ASST 8 cut(s) 34, 151, 229, 665, 701, 712, 764, 776
SfaNI GCATC 3 cut(s) 251, 427, 450
SfcI CTRYAG 1 cut(s) 85
Sfr303I CCGCGG 1 cut(s) 799
SgrBI CCGCGG 1 cut(s) 799
SmlI CTYRAG 1 cut(s) 27
SmoI CTYRAG 1 cut(s) 27
Sse9I AATT 7 cut(s) 53, 155, 235, 267, 339, 408, 480
SseBI AGGCCT 1 cut(s) 375
SsiI CCGC 3 cut(s) 679, 796, 798
SspI AATATT 1 cut(s) 218
SspMI CTAG 3 cut(s) 150, 657, 811
StuI AGGCCT 1 cut(s) 375
StyD4I CCNGG 3 cut(s) 595, 642, 706
TaaI ACNGT 1 cut(s) 327
TaqI TCGA 3 cut(s) 42, 192, 334
TasI AATT 7 cut(s) 53, 155, 235, 267, 339, 408, 480
TatI WGTACW 1 cut(s) 725
TauI GCSGC 1 cut(s) 801
Tru1I TTAA 2 cut(s) 78, 564
Tru9I TTAA 2 cut(s) 78, 564
TseFI GTSAC 1 cut(s) 487
TseI GCWGC 1 cut(s) 90
Tsp45I GTSAC 1 cut(s) 487
TspDTI ATGAA 8 cut(s) 375, 433, 461, 473, 582, 618, 655, 797
TspGWI ACGGA 1 cut(s) 368
XapI RAATTY 3 cut(s) 267, 408, 480
XspI CTAG 3 cut(s) 150, 657, 811
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.